| TF name | Position | PWM scan score |
| OxyR | 155-199 | 30.361 |
| ArcA | 269-329 | 26.423 |
| CytR | 309-348 | 19.772 |
| OmpR | 308-327 | 19.649 |
| CysB | 259-300 | 17.904 |
| FNR | 301-322 | 16.829 |
| Fis | 41-61 | 15.785 |
| Nac | 299-313 | 15.673 |
| NagC | 298-320 | 15.566 |
| CpxR | 157-171 | 14.848 |
| H-NS | 46-60 | 14.828 |
| XylR | 304-321 | 14.615 |
| PhoB | 311-330 | 14.570 |
| DcuR | 278-332 | 14.204 |
| Rob | 306-326 | 13.910 |
| ArgR | 307-322 | 13.794 |
| GlpR | 132-151 | 13.784 |
| SoxS | 43-60 | 13.778 |
| DeoR | 35-50 | 13.515 |
| ArgP | 384-396 | 13.322 |
| GadE | 301-320 | 13.302 |
| AgaR | 170-193 | 13.081 |
| Ada | 160-187 | 12.929 |
| IHF | 314-326 | 12.904 |
| GcvA | 293-321 | 12.811 |
| AraC | 315-332 | 11.735 |
| UlaR | 47-66 | 11.711 |
| RcsB | 8-21 | 11.532 |
| CRP | 259-280 | 11.504 |
| MarA | 132-152 | 11.435 |
| IdnR | 189-204 | 10.936 |
| UxuR | 81-98 | 10.276 |
| Mlc | 49-71 | 10.261 |
| PspF | 199-215 | 10.245 |
| Lrp | 261-272 | 10.079 |
| NarL | 351-357 | 9.994 |
| PhoP | 301-317 | 9.713 |
| ModE | 173-199 | 9.528 |
| NarP | 169-175 | 9.477 |
| TorR | 175-184 | 9.465 |
| NorR | 78-94 | 9.137 |
| TyrR | 75-96 | 8.963 |
| MetR | 205-228 | 8.959 |
| Fur | 49-63 | 8.499 |
| GntR | 79-98 | 8.347 |
| MelR | 39-56 | 8.078 |
| FadR | 69-85 | 7.637 |
| DnaA | 99-107 | 7.425 |
| LexA | 297-316 | 6.533 |
| MetJ | 372-379 | 6.460 |
| RhaS | 98-114 | 6.430 |
| FruR | 283-300 | 5.851 |
| MalT | 92-101 | 5.283 |
| NtrC | 295-311 | 5.028 |