| TF name | Position | PWM scan score |
| ArcA | 49-109 | 34.549 |
| CytR | 231-270 | 21.446 |
| CysB | 79-120 | 20.602 |
| NagC | 289-311 | 20.237 |
| OxyR | 263-307 | 19.688 |
| DcuR | 148-202 | 19.394 |
| Mlc | 46-68 | 19.152 |
| PhoP | 148-164 | 18.824 |
| GcvA | 188-216 | 18.414 |
| Fis | 238-258 | 17.314 |
| XylR | 187-204 | 16.826 |
| Fur | 302-316 | 16.598 |
| H-NS | 232-246 | 16.160 |
| GadE | 245-264 | 16.024 |
| FNR | 62-83 | 16.013 |
| TyrR | 252-273 | 15.958 |
| MarA | 68-88 | 15.906 |
| ArgR | 190-205 | 15.535 |
| OmpR | 232-251 | 15.366 |
| IHF | 249-261 | 15.335 |
| Nac | 288-302 | 15.175 |
| SoxS | 182-199 | 15.021 |
| CRP | 234-255 | 14.837 |
| PspF | 202-218 | 14.835 |
| RcsB | 10-23 | 14.557 |
| MetR | 204-227 | 14.116 |
| UlaR | 5-24 | 13.665 |
| PhoB | 153-172 | 13.146 |
| Rob | 189-209 | 12.848 |
| Lrp | 191-202 | 12.705 |
| ModE | 203-229 | 12.660 |
| AgaR | 232-255 | 12.165 |
| GlpR | 349-368 | 12.048 |
| GalS | 263-278 | 11.964 |
| GalR | 263-278 | 11.964 |
| MelR | 152-169 | 11.629 |
| ArgP | 213-225 | 11.574 |
| UxuR | 267-284 | 11.512 |
| TorR | 43-52 | 10.649 |
| IdnR | 260-275 | 10.214 |
| AraC | 250-267 | 10.145 |
| DeoR | 295-310 | 9.765 |
| NarL | 193-199 | 9.580 |
| MetJ | 203-210 | 9.447 |
| CpxR | 273-287 | 9.443 |
| PurR | 210-225 | 8.663 |
| Ada | 16-43 | 8.601 |
| FadR | 90-106 | 8.485 |
| DnaA | 196-204 | 7.974 |
| FruR | 258-275 | 7.965 |
| GntR | 327-346 | 7.690 |
| NtrC | 240-256 | 7.605 |
| NorR | 160-176 | 7.462 |
| NarP | 32-38 | 7.325 |
| LacI | 309-329 | 6.039 |
| FhlA | 221-260 | 5.879 |
| LexA | 107-126 | 5.141 |