| TF name | Position | PWM scan score |
| ArcA | 199-259 | 34.549 |
| CysB | 128-169 | 26.000 |
| FNR | 142-163 | 23.790 |
| OxyR | 45-89 | 19.476 |
| DcuR | 298-352 | 19.394 |
| Mlc | 196-218 | 19.152 |
| PhoP | 298-314 | 18.824 |
| GcvA | 338-366 | 18.414 |
| AgaR | 149-172 | 18.203 |
| ModE | 131-157 | 17.855 |
| OmpR | 68-87 | 17.058 |
| CytR | 133-172 | 17.034 |
| XylR | 337-354 | 16.826 |
| H-NS | 382-396 | 16.160 |
| MarA | 218-238 | 15.906 |
| NorR | 141-157 | 15.661 |
| ArgR | 340-355 | 15.535 |
| Fur | 302-316 | 15.515 |
| GadE | 206-225 | 15.155 |
| CRP | 139-160 | 15.051 |
| SoxS | 332-349 | 15.021 |
| Ada | 129-156 | 14.957 |
| PspF | 352-368 | 14.835 |
| RcsB | 160-173 | 14.557 |
| Fis | 71-91 | 14.472 |
| Nac | 155-169 | 14.414 |
| IHF | 159-171 | 14.164 |
| MetR | 354-377 | 14.116 |
| Rob | 50-70 | 13.859 |
| UlaR | 155-174 | 13.665 |
| Lrp | 145-156 | 13.423 |
| PhoB | 303-322 | 13.146 |
| NagC | 203-225 | 12.292 |
| TyrR | 194-215 | 12.208 |
| AraC | 29-46 | 12.144 |
| MelR | 302-319 | 11.629 |
| ArgP | 363-375 | 11.574 |
| GntR | 87-106 | 11.191 |
| TorR | 193-202 | 10.649 |
| DeoR | 149-164 | 10.023 |
| GlpR | 217-236 | 9.708 |
| NarL | 343-349 | 9.580 |
| MetJ | 353-360 | 9.447 |
| CpxR | 299-313 | 9.411 |
| GalS | 360-375 | 9.352 |
| GalR | 360-375 | 9.352 |
| IdnR | 197-212 | 9.143 |
| PurR | 360-375 | 8.663 |
| FadR | 240-256 | 8.485 |
| TrpR | 150-167 | 8.255 |
| DnaA | 346-354 | 7.974 |
| UxuR | 152-169 | 7.782 |
| FruR | 248-265 | 7.351 |
| NarP | 182-188 | 7.325 |
| NtrC | 323-339 | 6.861 |
| LexA | 257-276 | 5.141 |