| TF name | Position | PWM scan score |
| ArcA | 66-126 | 37.533 |
| OxyR | 61-105 | 26.633 |
| CysB | 72-113 | 25.593 |
| GadE | 92-111 | 23.678 |
| AgaR | 12-35 | 21.902 |
| CytR | 11-50 | 19.903 |
| GcvA | 109-137 | 19.503 |
| H-NS | 361-375 | 18.569 |
| UlaR | 14-33 | 17.692 |
| NorR | 65-81 | 17.447 |
| NagC | 92-114 | 17.126 |
| OmpR | 87-106 | 16.883 |
| PhoP | 295-311 | 15.884 |
| DeoR | 320-335 | 15.378 |
| Fis | 239-259 | 15.134 |
| ArgR | 149-164 | 14.823 |
| TyrR | 82-103 | 14.791 |
| FNR | 147-168 | 14.249 |
| ArgP | 300-312 | 14.245 |
| DcuR | 109-163 | 14.153 |
| CRP | 139-160 | 14.073 |
| RcsB | 67-80 | 13.729 |
| IHF | 14-26 | 13.638 |
| SoxS | 234-251 | 13.296 |
| MarA | 362-382 | 13.188 |
| Fur | 113-127 | 12.969 |
| ModE | 75-101 | 12.887 |
| PhoB | 253-272 | 12.862 |
| CpxR | 20-34 | 12.233 |
| GlpR | 139-158 | 12.229 |
| Mlc | 25-47 | 11.917 |
| Ada | 10-37 | 11.905 |
| UxuR | 15-32 | 11.895 |
| LacI | 140-160 | 11.841 |
| Lrp | 150-161 | 11.591 |
| Nac | 90-104 | 11.026 |
| TorR | 91-100 | 10.329 |
| DnaA | 303-311 | 10.244 |
| IdnR | 97-112 | 10.026 |
| NarL | 175-181 | 9.580 |
| LexA | 86-105 | 9.535 |
| GntR | 267-286 | 9.495 |
| PspF | 170-186 | 9.453 |
| Rob | 253-273 | 9.406 |
| AraC | 279-296 | 9.351 |
| XylR | 62-79 | 9.136 |
| FruR | 101-118 | 7.810 |
| MetR | 93-116 | 7.653 |
| NarP | 10-16 | 7.423 |
| GalR | 271-286 | 7.348 |
| GalS | 271-286 | 7.348 |
| MelR | 4-21 | 7.326 |
| MetJ | 267-274 | 7.009 |
| NtrC | 218-234 | 6.553 |
| FadR | 135-151 | 5.058 |