| TF name | Position | PWM scan score |
| ArcA | 235-295 | 39.258 |
| CysB | 210-251 | 27.603 |
| OxyR | 320-364 | 26.633 |
| GadE | 351-370 | 23.678 |
| CytR | 251-290 | 22.188 |
| AgaR | 271-294 | 21.902 |
| MetR | 62-85 | 19.992 |
| GcvA | 368-396 | 19.503 |
| PhoB | 73-92 | 19.329 |
| Mlc | 174-196 | 19.128 |
| OmpR | 72-91 | 18.378 |
| UlaR | 163-182 | 18.059 |
| NorR | 324-340 | 17.447 |
| H-NS | 153-167 | 17.359 |
| CRP | 237-258 | 17.317 |
| PhoP | 121-137 | 17.183 |
| NagC | 351-373 | 17.126 |
| IdnR | 78-93 | 16.637 |
| FNR | 34-55 | 16.183 |
| SoxS | 213-230 | 15.783 |
| PspF | 141-157 | 15.718 |
| TyrR | 65-86 | 15.499 |
| Fis | 219-239 | 15.439 |
| ModE | 77-103 | 14.962 |
| ArgR | 79-94 | 14.505 |
| Ada | 70-97 | 14.249 |
| MetJ | 10-17 | 13.753 |
| RcsB | 326-339 | 13.729 |
| IHF | 273-285 | 13.638 |
| MelR | 199-216 | 13.491 |
| DcuR | 83-137 | 13.438 |
| Fur | 77-91 | 13.373 |
| DeoR | 241-256 | 12.850 |
| CpxR | 279-293 | 12.233 |
| GlpR | 363-382 | 12.103 |
| MarA | 362-382 | 11.896 |
| UxuR | 274-291 | 11.895 |
| Nac | 226-240 | 11.635 |
| FadR | 134-150 | 11.563 |
| Rob | 193-213 | 11.135 |
| Lrp | 328-339 | 10.981 |
| GntR | 83-102 | 10.868 |
| XylR | 191-208 | 10.626 |
| ArgP | 370-382 | 10.526 |
| TorR | 350-359 | 10.329 |
| LexA | 345-364 | 9.535 |
| GalS | 167-182 | 9.458 |
| GalR | 167-182 | 9.458 |
| FhlA | 110-149 | 9.401 |
| AraC | 273-290 | 9.298 |
| NarL | 55-61 | 9.087 |
| MalT | 34-43 | 8.988 |
| PurR | 167-182 | 8.524 |
| DnaA | 275-283 | 8.160 |
| FruR | 360-377 | 7.810 |
| NarP | 269-275 | 7.423 |
| LacI | 256-276 | 6.912 |