| TF name | Position | PWM scan score |
| ArcA | 266-326 | 28.789 |
| OxyR | 284-328 | 18.749 |
| OmpR | 290-309 | 17.928 |
| AgaR | 41-64 | 17.726 |
| FNR | 158-179 | 17.364 |
| PhoP | 366-382 | 16.688 |
| GntR | 371-390 | 16.306 |
| LacI | 26-46 | 16.306 |
| GcvA | 370-398 | 16.278 |
| CysB | 178-219 | 15.997 |
| ArgP | 176-188 | 15.875 |
| DcuR | 266-320 | 15.496 |
| CytR | 217-256 | 14.971 |
| Mlc | 201-223 | 14.694 |
| Fis | 293-313 | 14.475 |
| CpxR | 14-28 | 14.244 |
| NagC | 262-284 | 13.867 |
| ArgR | 198-213 | 13.745 |
| XylR | 271-288 | 13.509 |
| Nac | 198-212 | 13.457 |
| H-NS | 317-331 | 13.304 |
| MetR | 362-385 | 13.120 |
| PhoB | 17-36 | 12.994 |
| Fur | 304-318 | 12.958 |
| MarA | 328-348 | 12.283 |
| PspF | 239-255 | 12.139 |
| GadE | 237-256 | 12.081 |
| RcsB | 373-386 | 12.034 |
| SoxS | 374-391 | 11.885 |
| IHF | 246-258 | 11.792 |
| Rob | 97-117 | 11.389 |
| CRP | 198-219 | 11.360 |
| AraC | 191-208 | 11.354 |
| DnaA | 254-262 | 10.907 |
| Lrp | 196-207 | 10.891 |
| DeoR | 126-141 | 10.779 |
| GalS | 106-121 | 10.651 |
| GalR | 106-121 | 10.651 |
| FadR | 14-30 | 10.437 |
| IdnR | 285-300 | 10.187 |
| FruR | 347-364 | 9.964 |
| ModE | 304-330 | 9.682 |
| GlpR | 378-397 | 9.223 |
| NarL | 306-312 | 9.197 |
| UlaR | 300-319 | 9.115 |
| TyrR | 279-300 | 8.951 |
| UxuR | 49-66 | 8.940 |
| Ada | 259-286 | 8.376 |
| MelR | 229-246 | 8.246 |
| FhlA | 153-192 | 7.908 |
| TorR | 375-384 | 7.462 |
| NorR | 282-298 | 7.455 |
| LexA | 347-366 | 7.011 |
| MalT | 68-77 | 6.846 |
| PurR | 369-384 | 5.885 |
| MetJ | 319-326 | 5.674 |
| NarP | 118-124 | 5.408 |
| TrpR | 193-210 | 5.269 |
| NtrC | 133-149 | 5.153 |