Origin IGS: atttcacaaaggatgcacaaaaagcactgaacggagtgttgtcttttgccgcattcgcgtcgatacttgtgaatcttcggtgcgtcgttaggcaacgattccgtgctccgatgctctgccacacgaaaaggcagctacgcctatagatgtttttgttaaataatattaacgggggggggggtagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcatttcatatatttgatgacaaagatataaaaaaaatcatatacaaactttttttggggataaaagtcattttttttgtattgtccggttgataattgttaaatattcattatcccggattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcggtgaattgttaaattgttgaattgttaaattgttgagttgttgattcgttgacatgttgatttgttggctgaccgctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgttatacggtatccgaacgcgaatttcgcaaacgggtgcaaatca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgatttgcacccgtttgcgaaattcgcgttcggataccgtataacacgcataaccattacccgaaagggctgaaagcctgatataatcgttagcggtcagtattcagcggtcagccaacaaatcaacatgtcaacgaatcaacaactcaacaatttaacaattcaacaatttaacaattcaccgcctctgcggggtttataagagctgaaggcctgaattaaattcattcttattggttctattgccgaatccgggataatgaatatttaacaattatcaaccggacaatacaaaaaaaatgacttttatccccaaaaaaagtttgtatatgattttttttatatctttgtcatcaaatatatgaaatgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatctacccccccccccgttaatattatttaacaaaaacatctataggcgtagctgccttttcgtgtggcagagcatcggagcacggaatcgttgcctaacgacgcaccgaagattcacaagtatcgacgcgaatgcggcaaaagacaacactccgttcagtgctttttgtgcatcctttgtgaaat Mask Tandem Repeat Region ================================================ atttcacaaaggatgcacaaaaagcactgaacggagtgttgtcttttgccgcattcgcgtcgatacttgtgaatcttcggtgcgtcgttaggcaacgattccgtgctccgatgctctgccacacgaaaaggcagctacgcctatagatgtttttgttaaataatattaacgggggggggggtagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcatttcatatatttgatgacaaagatataaaaaaaatcatatacaaactttttttggggataaaagtcattttttttgtattgtccggttgataattgttaaatattcattatcccggattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctgaccgctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgttatacggtatccgaacgcgaatttcgcaaacgggtgcaaatca Find is-nt database================================================ Query_seq: TF3104:TF3105|TF3104:TF3105:outer membrane protein, TonB dependent receptor:hypothetical protein:->->:3337511..3338207 697 atttcacaaaggatgcacaaaaagcactgaacggagtgttgtcttttgccgcattcgcgtcgatacttgtgaatcttcggtgcgtcgttaggcaacgattccgtgctccgatgctctgccacacgaaaaggcagctacgcctatagatgtttttgttaaataatattaacgggggggggggtagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcatttcatatatttgatgacaaagatataaaaaaaatcatatacaaactttttttggggataaaagtcattttttttgtattgtccggttgataattgttaaatattcattatcccggattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcggtgaattgttaaattgttgaattgttaaattgttgagttgttgattcgttgacatgttgatttgttggctgaccgctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgttatacggtatccgaacgcgaatttcgcaaacgggtgcaaatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF3104:TF3105|TF3104:TF3105:outer membrane protein, TonB dependent receptor:hypothetical protein:->->:3337511..3338207 697 atttcacaaaggatgcacaaaaagcactgaacggagtgttgtcttttgccgcattcgcgtcgatacttgtgaatcttcggtgcgtcgttaggcaacgattccgtgctccgatgctctgccacacgaaaaggcagctacgcctatagatgtttttgttaaataatattaacgggggggggggtagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcatttcatatatttgatgacaaagatataaaaaaaatcatatacaaactttttttggggataaaagtcattttttttgtattgtccggttgataattgttaaatattcattatcccggattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcggtgaattgttaaattgttgaattgttaaattgttgagttgttgattcgttgacatgttgatttgttggctgaccgctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgttatacggtatccgaacgcgaatttcgcaaacgggtgcaaatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF3104:TF3105|TF3104:TF3105:outer membrane protein, TonB dependent receptor:hypothetical protein:->->:3337511..3338207 697 atttcacaaaggatgcacaaaaagcactgaacggagtgttgtcttttgccgcattcgcgtcgatacttgtgaatcttcggtgcgtcgttaggcaacgattccgtgctccgatgctctgccacacgaaaaggcagctacgcctatagatgtttttgttaaataatattaacgggggggggggtagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcatttcatatatttgatgacaaagatataaaaaaaatcatatacaaactttttttggggataaaagtcattttttttgtattgtccggttgataattgttaaatattcattatcccggattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcggtgaattgttaaattgttgaattgttaaattgttgagttgttgattcgttgacatgttgatttgttggctgaccgctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgttatacggtatccgaacgcgaatttcgcaaacgggtgcaaatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atttcacaaaggatgcacaaaaagcactgaacggagtgttgtcttttgccgcattcgcgtcgatacttgtgaatcttcggtgcgtcgttaggcaacgattccgtgctccgatgctctgccacacgaaaaggcagctacgcctatagatgtttttgttaaataatattaacgggggggggggtagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcatttcatatatttgatgacaaagatataaaaaaaatcatatacaaactttttttggggataaaagtcattttttttgtattgtccggttgataattgttaaatattcattatcccggattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcggtgaattgttaaattgttgaattgttaaattgttgagttgttgattcgttgacatgttgatttgttggctgaccgctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgttatacggtatccgaacgcgaatttcgcaaacgggtgcaaatca Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 27 End: 143 .......................... M N G V L S F A A F A S I L V N L R C V V R Q R F R A P M L C H T K R Q L R L .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 220 End: 309 ........................................................................................................................................................................................................................... M V H T K R M N T F Y N I V H Q D I K V C L L L F H V S F L .................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 251 End: 355 .......................................................................................................................................................................................................................................................... M I L F I K I L K F V F F S F M S R F Y E I D A L G H F I Y L M T K I ...................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 431 End: 532 .............................................................................................................................................................................................................................................................................................................................................................................................................................................. M F I I P D S A I E P I R M N L I Q A F S S Y K P R R G G E L L N C ..................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 595 End: 696 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M L T A N D Y I R L S A L S G N G Y A C Y T V S E R E F R K R V Q I . Protein_Len: 39 Strand: - Start: 499 End: 615 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L G R L P P S N N F Q Q I T L N N L Q Q N T S M N I Q Q S V A S Y Q G S V I M .................................................................................. Protein_Len: 33 Strand: - Start: 336 End: 434 ............................................................................................................................................................................................................................................................................................................................................... I N S S L S I F F I M Y L S K K P I F T M K K T N D P Q Y N N F M ....................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: - Start: 169 End: 297 ........................................................................................................................................................................ R P P P Y I I S P L S E K K G E S Y H V R L S H V S K I I N N M L I N F N T K K E K M ................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 44 Strand: - Start: 3 End: 134 .. E C L I C L F C Q V S H Q R K G C E R R Y K H I K P A D N P L S E T S R H E A V R F P M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 2 End: 193 . A C F A S F P T N D K A A N A D I S T F R R H T T L C R N R A G I S Q W V F L C S R R Y I N K N F L I L P P P P L Y N M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ atttcacaaaggatgcacaaaaagcactgaacggagtgttgtcttttgccgcattcgcgtcgatacttgtgaatcttcggtgcgtcgttaggcaacgattccgtgctccgatgctctgccacacgaaaaggcagctacgcctatagatgtttttgttaaataatattaacgggggggggggtagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcatttcatatatttgatgacaaagatataaaaaaaatcatatacaaactttttttggggataaaagtcattttttttgtattgtccggttgataattgttaaatattcattatcccggattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcggtgaattgttaaattgttgaattgttaaattgttgagttgttgattcgttgacatgttgatttgttggctgaccgctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgttatacggtatccgaacgcgaatttcgcaaacgggtgcaaatca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atttcacaaaggatgcacaaaaagcactgaacggagtgttgtcttttgccgcattcgcgtcgatacttgtgaatcttcggtgcgtcgttaggcaacgattccgtgctccgatgctctgccacacgaaaaggcagctacgcctatagatgtttttgttaaataatattaacgggggggggggtagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcatttcatatatttgatgacaaagatataaaaaaaatcatatacaaactttttttggggataaaagtcattttttttgtattgtccggttgataattgttaaatattcattatcccggattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcggtgaattgttaaattgttgaattgttaaattgttgagttgttgattcgttgacatgttgatttgttggctgaccgctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgttatacggtatccgaacgcgaatttcgcaaacgggtgcaaatca Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TF3104:TF3105|TF3104:TF3105:outer membrane protein, TonB dependent receptor:hypothetical protein:->->:3337511..3338207 697 atttcacaaaggatgcacaaaaagcactgaacggagtgttgtcttttgccgcattcgcgtcgatacttgtgaatcttcggtgcgtcgttaggcaacgattccgtgctccgatgctctgccacacgaaaaggcagctacgcctatagatgtttttgttaaataatattaacgggggggggggtagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcatttcatatatttgatgacaaagatataaaaaaaatcatatacaaactttttttggggataaaagtcattttttttgtattgtccggttgataattgttaaatattcattatcccggattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcggtgaattgttaaattgttgaattgttaaattgttgagttgttgattcgttgacatgttgatttgttggctgaccgctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgttatacggtatccgaacgcgaatttcgcaaacgggtgcaaatca Intra-Species Hit: Count: 8 Min: 1 Max: 697 Len: 697 Subject: tfor_TF3104_TF3105|outer membrane protein, TonB dependent receptor:hypothetical protein|POSITIVE:POSITIVE|[3337511,3338207]|697 HSP 1 e-value: 0.0 bit: 821.0 Len: 516 Query Start:1 Query End:516 Subject Strand: POSITIVE Subject Start: 1 Subject End: 516 atttcacaaaggatgcacaaaaagcactgaacggagtgttgtcttttgccgcattcgcgtcgatacttgtgaatcttcggtgcgtcgttaggcaacgattccgtgctccgatgctctgccacacgaaaaggcagctacgcctatagatgtttttgttaaataatattaacnnnnnnnnnnntagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcatttcatatatttgatgacaaagatatnnnnnnnntcatatacaaacnnnnnnnggggataaaagtcannnnnnnngtattgtccggttgataattgttaaatattcattatcccggattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcgg..................................................................................................................................................................................... atttcacaaaggatgcacaaaaagcactgaacggagtgttgtcttttgccgcattcgcgtcgatacttgtgaatcttcggtgcgtcgttaggcaacgattccgtgctccgatgctctgccacacgaaaaggcagctacgcctatagatgtttttgttaaataatattaacgggggggggggtagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcatttcatatatttgatgacaaagatataaaaaaaatcatatacaaactttttttggggataaaagtcattttttttgtattgtccggttgataattgttaaatattcattatcccggattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcgg..................................................................................................................................................................................... HSP 2 e-value: 2.0E-58 bit: 228.0 Len: 115 Query Start:583 Query End:697 Subject Strand: POSITIVE Subject Start: 583 Subject End: 697 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctgaccgctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgttatacggtatccgaacgcgaatttcgcaaacgggtgcaaatca ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctgaccgctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgttatacggtatccgaacgcgaatttcgcaaacgggtgcaaatca Subject: tfor_TF0638_TF0639|GTP-binding protein LepA:hypothetical protein|POSITIVE:POSITIVE|[677344,678016]|673 HSP 1 e-value: 8.0E-92 bit: 339.0 Len: 175 Query Start:182 Query End:356 Subject Strand: NEGATIVE Subject Start: 80 Subject End: 254 .....................................................................................................................................................................................tagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcatttcatatatttgatgacaaagatat..................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................tagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcgtttcatatatttgatgacaaagatat..................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-25 bit: 119.0 Len: 72 Query Start:99 Query End:170 Subject Strand: NEGATIVE Subject Start: 264 Subject End: 335 ..................................................................................................ttccgtgctccgatgctctgccacacgaaaaggcagctacgcctatagatgtttttgttaaataatattaac............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................ttccctgctccaatgctctgccacacgaaaaggcagctatgcctatagatgtttttgttaaataatattaac............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1654_TF1655|hypothetical protein:long-chain-fatty-acid-CoA ligase|POSITIVE:POSITIVE|[1768766,1769418]|653 HSP 1 e-value: 5.0E-25 bit: 117.0 Len: 71 Query Start:446 Query End:516 Subject Strand: POSITIVE Subject Start: 396 Subject End: 466 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................gattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcgg..................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................gattccgcaatagaaccaataagaatgaatttaattcaggccttcagcccttataaacctcgcagaggcgg..................................................................................................................................................................................... HSP 2 e-value: 2.0E-24 bit: 115.0 Len: 66 Query Start:591 Query End:656 Subject Strand: POSITIVE Subject Start: 509 Subject End: 574 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgtta......................................... ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctgaatactgaccgctaacgattatatcgggcttgcagccctttcgggtaatggttatgcgtgtta......................................... Subject: tfor_TF0029_TF0030|hypothetical protein:N-acetylneuraminate lyase|POSITIVE:POSITIVE|[25123,25909]|787 HSP 1 e-value: 5.0E-25 bit: 117.0 Len: 71 Query Start:446 Query End:516 Subject Strand: POSITIVE Subject Start: 18 Subject End: 88 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................gattcggcaatagaaccaataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcgg..................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................gattccgcaatagaaccaataagaatgaatttaattcaggccttcagcccttataaacctcgcagaggcgg..................................................................................................................................................................................... HSP 2 e-value: 3.0E-17 bit: 91.7 Len: 50 Query Start:583 Query End:632 Subject Strand: POSITIVE Subject Start: 139 Subject End: 188 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctgaccgctgaatactgaccgctaacgattatatcaggctttcagccct................................................................. ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctgaccgctgaatactgaccgctaacgattatatcaggcttacagccct................................................................. Subject: tfor_TF0179_TF0180|pyrophosphate-energized proton pump:carboxynorspermidine decarboxylase|POSITIVE:POSITIVE|[190752,191406]|655 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 67 Query Start:590 Query End:656 Subject Strand: NEGATIVE Subject Start: 339 Subject End: 405 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctgaatactgaccgctaacgattatatcaggctttcagccctttcgggtaatggttatgcgtgtta......................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctgaacactgaccgctaacgattatatcgggcttgcagccctttcgggtaatggttatgcgtgtta......................................... HSP 2 e-value: 8.0E-15 bit: 83.8 Len: 54 Query Start:463 Query End:516 Subject Strand: NEGATIVE Subject Start: 463 Subject End: 516 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................aataagaatgaatttaattcaggccttcagctcttataaaccccgcagaggcgg..................................................................................................................................................................................... ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................aataaggatgaatttaattcagaccttcagcccttataaaccccgcagaggcgg..................................................................................................................................................................................... Subject: tfor_TF0585_TF0586|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[616824,617452]|629 HSP 1 e-value: 5.0E-16 bit: 87.7 Len: 48 Query Start:446 Query End:493 Subject Strand: POSITIVE Subject Start: 184 Subject End: 231 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................gattcggcaatagaaccaataagaatgaatttaattcaggccttcagc............................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................................................gattccgcaatagaaccaataagaatgaatttaattcaggccttcagc............................................................................................................................................................................................................ HSP 2 e-value: 3.0E-11 bit: 71.9 Len: 44 Query Start:613 Query End:656 Subject Strand: POSITIVE Subject Start: 286 Subject End: 329 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatcaggctttcagccctttcgggtaatggttatgcgtgtta......................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatctggctttcagccctttcgggtaatggttatgtgtgtta......................................... Subject: tfor_TF1483_TF1484|glycosyltransferase family protein:penicillin binding protein|POSITIVE:POSITIVE|[1578886,1579698]|813 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 40 Query Start:617 Query End:656 Subject Strand: NEGATIVE Subject Start: 553 Subject End: 592 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaggctttcagccctttcgggtaatggttatgcgtgtta......................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaggctttcagccctttcgggtaatggttatgcgtgtta......................................... HSP 2 e-value: 3.0E-11 bit: 71.9 Len: 52 Query Start:442 Query End:493 Subject Strand: NEGATIVE Subject Start: 580 Subject End: 631 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................cccggattcggcaatagaaccaataagaatgaatttaattcaggccttcagc............................................................................................................................................................................................................ .........................................................................................................................................................................................................................................................................................................................................................................................................................................................cccggattccgcaatagaagaaataagaatgaatttaattcaggctttcagc............................................................................................................................................................................................................ Subject: tfor_TF1473_TF1474|hypothetical protein:6- phosphogluconolactonase|POSITIVE:POSITIVE|[1567027, 1567481]|455 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 48 Query Start:446 Query End:493 Subject Strand: NEGATIVE Subject Start: 331 Subject End: 378 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................gattcggcaatagaaccaataagaatgaatttaattcaggccttcagc............................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................................................gattcggcaatagaacaaataaggatgaatttaattcaggccttcagc............................................................................................................................................................................................................ HSP 2 e-value: 7.0E-12 bit: 73.8 Len: 37 Query Start:620 Query End:656 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 269 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggctttcagccctttcgggtaatggttatgcgtgtta......................................... ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggctttcagccctttcgggtaatggttatgcgtgtta......................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUUCACAAAGGAUGCACAAAAAGCACUGAACGGAGUGUUGUCUUUUGCCGCAUUCGCGUCGAUACUUGUGAAUCUUCGGUGCGUCGUUAGGCAACGAUUCCGUGCUCCGAUGCUCUGCCACACGAAAAGGCAGCUACGCCUAUAGAUGUUUUUGUUAAAUAAUAUUAACGGGGGGGGGGGUAGAUAAUUGAUGGCAAGCUCUCUUUCUUUCCUUCAGAAUAGUGCACACGAAGAGAAUGAACACUUUUUAUAAUAUUGUUCAUCAAGAUAUUAAAGUUUGUCUUCUUCUCUUUCAUGUCUCGUUUUUAUGAGAUUGACGCCCUUGGUCAUUUCAUAUAUUUGAUGACAAAGAUAUAAAAAAAAUCAUAUACAAACUUUUUUUGGGGAUAAAAGUCAUUUUUUUUGUAUUGUCCGGUUGAUAAUUGUUAAAUAUUCAUUAUCCCGGAUUCGGCAAUAGAACCAAUAAGAAUGAAUUUAAUUCAGGCCUUCAGCUCUUAUAAACCCCGCAGAGGCGGUGAAUUGUUAAAUUGUUGAAUUGUUAAAUUGUUGAGUUGUUGAUUCGUUGACAUGUUGAUUUGUUGGCUGACCGCUGAAUACUGACCGCUAACGAUUAUAUCAGGCUUUCAGCCCUUUCGGGUAAUGGUUAUGCGUGUUAUACGGUAUCCGAACGCGAAUUUCGCAAACGGGUGCAAAUCA .............(((((....((((((......))))))..(.(((((...(((((((((((((((.(((..((((((..((((((...((((.((....)))))).)))))).(((((.........)))))....((((((....(((..((((....))))..))).((..((..((.(((...(((....)))..)))))..))..))......)))).))...))))))((((.(((((((...(((((.((((((.((((((....(((((((((..............(((((((..(.((((((((.(((.......))))))))))).)..))).))))..(((.........)))....)))))))))))))))))))))..(((..((((.((((...((((((..((((((.(........).))))))))))))...)))).)))).......((((.......)))).))).((((((....((((..(((((....)))).)..))))......)))))).......))))).))).)))).))))..((((((((....(..(((.((((..((((((..((((...(....)......))))...))))))....)))).)))..)....)))))))))))))))).)).))))))))...))))).).)))))..... (-182.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUUUGCACCCGUUUGCGAAAUUCGCGUUCGGAUACCGUAUAACACGCAUAACCAUUACCCGAAAGGGCUGAAAGCCUGAUAUAAUCGUUAGCGGUCAGUAUUCAGCGGUCAGCCAACAAAUCAACAUGUCAACGAAUCAACAACUCAACAAUUUAACAAUUCAACAAUUUAACAAUUCACCGCCUCUGCGGGGUUUAUAAGAGCUGAAGGCCUGAAUUAAAUUCAUUCUUAUUGGUUCUAUUGCCGAAUCCGGGAUAAUGAAUAUUUAACAAUUAUCAACCGGACAAUACAAAAAAAAUGACUUUUAUCCCCAAAAAAAGUUUGUAUAUGAUUUUUUUUAUAUCUUUGUCAUCAAAUAUAUGAAAUGACCAAGGGCGUCAAUCUCAUAAAAACGAGACAUGAAAGAGAAGAAGACAAACUUUAAUAUCUUGAUGAACAAUAUUAUAAAAAGUGUUCAUUCUCUUCGUGUGCACUAUUCUGAAGGAAAGAAAGAGAGCUUGCCAUCAAUUAUCUACCCCCCCCCCCGUUAAUAUUAUUUAACAAAAACAUCUAUAGGCGUAGCUGCCUUUUCGUGUGGCAGAGCAUCGGAGCACGGAAUCGUUGCCUAACGACGCACCGAAGAUUCACAAGUAUCGACGCGAAUGCGGCAAAAGACAACACUCCGUUCAGUGCUUUUUGUGCAUCCUUUGUGAAAU .....(((((...(((((...(((((((((..(((((..........((((..........(....)((((((..((..(((((.((((....))))..)))))..))..))))))...........))))....(((((.........................................(((.(((((((((((..((((....(((.(((.(((((...)))))......(((((......))))).(((((((((((............))))))..)))))..............((((..........((((((((((.......))))))))))...((((.(((((((......)))..)))).))))..)))).((((...........(((((((.((((((((.((......((((((..((.....))))))))......)).))).))))))))))))......((((.......)))).))))....))).))).))))..))))).......(((((......)))))....((((....(((((....)))))....)))).))))))...)))....(((...(((((.....)))))..)))..)))))....))))))))))))))...)))))......((((......))))......)))))............. (-158.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 804 669 621 144 100 tfor:TF1516|5end_transposase_fragment_1626407..1626637_POSITIVE 746 630 581 219 169 tfor:TF0341|5end_conserved_hypothetical_protein_364348..364578_POSITIVE 702 490 442 213 165 tfor:TF1474|5end_6-phosphogluconolactonase_1567342..1567572_POSITIVE 642 669 621 151 100 tfor:TF2202|5end_hypothetical_protein_2378682..2378912_POSITIVE 614 490 442 155 107 tfor:TF3082|5end_conserved_hypothetical_protein_3316431..3316661_POSITIVE 591 630 581 210 160 tfor:TF0367|5end_eukaryotic-like__metalloproteinase_384007..384237_POSITIVE 591 630 581 210 160 tfor:TF0364|5end_ysyl_endopeptidase_380395..380625_POSITIVE 567 606 563 177 134 tfor:TF2439|5end_conserved_hypothetical_protein_2616380..2616610_POSITIVE 561 490 442 173 125 tfor:TF2048|5end_conserved_hypothetical_protein_2210643..2210873_POSITIVE 561 490 442 148 100 tfor:TF1275|5end_transcription-repair_coupling_factor_1357866..1358096_POSITIVE 516 639 591 132 84 tfor:TF2824|5end_nucleoside-transporting_protein_nupG_3014701..3014931_POSITIVE 512 630 581 205 155 tfor:TF0359|5end_conserved_hypothetical_protein_376943..377173_POSITIVE 494 496 464 224 192 tfor:TF2204|5end_conserved_hypothetical_protein_2378866..2379096_POSITIVE 489 600 551 224 175 tfor:TF0725|5end_O-acetylhomoserine_(thiol)-lyase_776556..776786_POSITIVE 488 621 581 231 193 tfor:TF2162|5end_thermolysin_precursor_2338669..2338899_POSITIVE 485 623 581 231 188 tfor:TF2167|5end_hypothetical_protein_2342586..2342816_POSITIVE 481 600 551 57 3 tfor:TF1274|5end_hypothetical_protein_1357621..1357851_POSITIVE 460 125 83 171 127 tfor:TF3022|5end_chorismate_synthase_3246136..3246366_POSITIVE 460 615 571 228 189 tfor:TF2174|5end_possible_endopeptidase_precursor_2346292..2346522_POSITIVE 453 150 101 203 152 tfor:TF1224|5end_hypothetical_protein_1311203..1311433_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 690 640 592 57 10 tfor:TF0340|3end_hypothetical_protein_364257..364407_POSITIVE 671 690 641 83 35 tfor:TF1761|3end_hypothetical_protein_1899579..1899729_POSITIVE 661 680 631 125 74 tfor:TF2172|3end_hypothetical_protein_2346135..2346285_POSITIVE 661 680 631 53 2 tfor:TF2173|3end_hypothetical_protein_2346063..2346213_POSITIVE 660 680 631 53 2 tfor:TF2166|3end_hypothetical_protein_2342362..2342512_POSITIVE 660 680 631 53 2 tfor:TF0366|3end_hypothetical_protein_383811..383961_POSITIVE 642 669 621 87 36 tfor:TF3003|3end_hypothetical_protein_3220629..3220779_POSITIVE 642 687 641 150 104 tfor:TF1762|3end_hypothetical_protein_1899648..1899798_POSITIVE 633 680 631 53 2 tfor:TF0362|3end_hypothetical_protein_380199..380349_POSITIVE 584 680 631 53 2 tfor:TF0346|3end_hypothetical_protein_367316..367466_POSITIVE 561 490 442 97 49 tfor:TF1274|3end_hypothetical_protein_1357895..1358045_POSITIVE 540 690 641 132 77 tfor:TF0018|3end_hypothetical_protein_12091..12241_POSITIVE 460 125 83 149 105 tfor:TF3021|3end_FKBP-type_peptidyl-prolyl_cis-trans_isomerase_3246194..3246344_POSITIVE 438 690 651 58 11 tfor:TF2996|3end_hypothetical_protein_3211121..3211271_POSITIVE 418 80 31 99 32 tfor:TF3064|3end_oxidoreductase,_aldo/keto_reductase_family_3290984..3291134_POSITIVE 406 638 599 110 57 tfor:TF2816|3end_hypothetical_protein_3007184..3007334_POSITIVE 406 108 61 109 54 tfor:TF0444|3end_Na+-translocating_NADH-quinone_oxidoreductase,_subunit_5_466518..466668_POSITIVE 399 118 77 150 103 tfor:TF1824|3end_ABC_transporter,_ATP-binding_protein_1973510..1973660_POSITIVE 392 673 636 126 86 tfor:TF1585|3end_hypothetical_protein_1690610..1690760_POSITIVE 392 673 636 119 79 tfor:TF1584|3end_hypothetical_protein_1690603..1690753_POSITIVE