Origin IGS: aatttaaatacctaatgtttttaattaatttttattttacgggtgcaaaagtagaggtgttcgccaaagggggcaatcccgaattgtcggtattttatgccaatttctccccaataatagggatacgtcgtaaagtcgttgataggggtcgattatttttttagggctgtcgggcagaaaaatagacgttctacttctttttatctattgttgatagaggcgtttttgcgttacgggggcttgttctccggtttcatcggacagcgatcgttttttacttgaaggaatattttcttaagatgaaggatcatttccctatgatagacgaccaaaagaaggcttttcttttaccgaataacaatcatctgatttttctcctgttgtaaaaaaagaaaccgacggtaatcacttacggccggctcctgaaaagaaatttatttgacttacgtggtttactgtttataatagatctcgattataaaaacattttttctatcgcgatcttttaaaaattcacagtgcaaagatacggcggcttattgcgctccgcaatccccattttaggggaaattttgcgcttatgtcgccaataatggctagtttatgattcaaaaagtcggggaagtgtgccgaatatataatatttttgccttgtgagacattttttcgagtccttacaagtgttgttcggctagtcttacaaaccgggataggcaaagatagcggaaagtgtcggttacccaatggatgctttgaaaaaagtgtcggacaatgtttattatgtgttttaaatgctttgtttattgaattttatcttttatcggttgtaaaaaagcatttatccggagagaagacgaggggtttgtttttctctcccgattgatgtacttttgcggcctcaagaaacacagcataacacaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tttgtgttatgctgtgtttcttgaggccgcaaaagtacatcaatcgggagagaaaaacaaacccctcgtcttctctccggataaatgcttttttacaaccgataaaagataaaattcaataaacaaagcatttaaaacacataataaacattgtccgacacttttttcaaagcatccattgggtaaccgacactttccgctatctttgcctatcccggtttgtaagactagccgaacaacacttgtaaggactcgaaaaaatgtctcacaaggcaaaaatattatatattcggcacacttccccgactttttgaatcataaactagccattattggcgacataagcgcaaaatttcccctaaaatggggattgcggagcgcaataagccgccgtatctttgcactgtgaatttttaaaagatcgcgatagaaaaaatgtttttataatcgagatctattataaacagtaaaccacgtaagtcaaataaatttcttttcaggagccggccgtaagtgattaccgtcggtttctttttttacaacaggagaaaaatcagatgattgttattcggtaaaagaaaagccttcttttggtcgtctatcatagggaaatgatccttcatcttaagaaaatattccttcaagtaaaaaacgatcgctgtccgatgaaaccggagaacaagcccccgtaacgcaaaaacgcctctatcaacaatagataaaaagaagtagaacgtctatttttctgcccgacagccctaaaaaaataatcgacccctatcaacgactttacgacgtatccctattattggggagaaattggcataaaataccgacaattcgggattgccccctttggcgaacacctctacttttgcacccgtaaaataaaaattaattaaaaacattaggtatttaaatt Mask Tandem Repeat Region ================================================ aatttaaatacctaatgtttttaattaatttttattttacgggtgcaaaagtagaggtgttcgccaaagggggcaatcccgaattgtcggtattttatgccaatttctccccaataatagggatacgtcgtaaagtcgttgataggggtcgattatttttttagggctgtcgggcagaaaaatagacgttctacttctttttatctattgttgatagaggcgtttttgcgttacgggggcttgttctccggtttcatcggacagcgatcgttttttacttgaaggaatattttcttaagatgaaggatcatttccctatgatagacgaccaaaagaaggcttttcttttaccgaataacaatcatctgatttttctcctgttgtaaaaaaagaaaccgacggtaatcacttacggccggctcctgaaaagaaatttatttgacttacgtggtttactgtttataatagatctcgattataaaaacattttttctatcgcgatcttttaaaaattcacagtgcaaagatacggcggcttattgcgctccgcaatccccattttaggggaaattttgcgcttatgtcgccaataatggctagtttatgattcaaaaagtcggggaagtgtgccgaatatataatatttttgccttgtgagacattttttcgagtccttacaagtgttgttcggctagtcttacaaaccgggataggcaaagatagcggaaagtgtcggttacccaatggatgctttgaaaaaagtgtcggacaatgtttattatgtgttttaaatgctttgtttattgaattttatcttttatcggttgtaaaaaagcatttatccggagagaagacgaggggtttgtttttctctcccgattgatgtacttttgcggcctcaagaaacacagcataacacaaa Find is-nt database================================================ Query_seq: TF3077:TF3078|TF3077:TF3078:tonB-dependent receptor HmuY:ribonucleoside diphosphate reductase, alpha subunit:->->:3305827..3306748 922 aatttaaatacctaatgtttttaattaatttttattttacgggtgcaaaagtagaggtgttcgccaaagggggcaatcccgaattgtcggtattttatgccaatttctccccaataatagggatacgtcgtaaagtcgttgataggggtcgattatttttttagggctgtcgggcagaaaaatagacgttctacttctttttatctattgttgatagaggcgtttttgcgttacgggggcttgttctccggtttcatcggacagcgatcgttttttacttgaaggaatattttcttaagatgaaggatcatttccctatgatagacgaccaaaagaaggcttttcttttaccgaataacaatcatctgatttttctcctgttgtaaaaaaagaaaccgacggtaatcacttacggccggctcctgaaaagaaatttatttgacttacgtggtttactgtttataatagatctcgattataaaaacattttttctatcgcgatcttttaaaaattcacagtgcaaagatacggcggcttattgcgctccgcaatccccattttaggggaaattttgcgcttatgtcgccaataatggctagtttatgattcaaaaagtcggggaagtgtgccgaatatataatatttttgccttgtgagacattttttcgagtccttacaagtgttgttcggctagtcttacaaaccgggataggcaaagatagcggaaagtgtcggttacccaatggatgctttgaaaaaagtgtcggacaatgtttattatgtgttttaaatgctttgtttattgaattttatcttttatcggttgtaaaaaagcatttatccggagagaagacgaggggtttgtttttctctcccgattgatgtacttttgcggcctcaagaaacacagcataacacaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF3077:TF3078|TF3077:TF3078:tonB-dependent receptor HmuY:ribonucleoside diphosphate reductase, alpha subunit:->->:3305827..3306748 922 aatttaaatacctaatgtttttaattaatttttattttacgggtgcaaaagtagaggtgttcgccaaagggggcaatcccgaattgtcggtattttatgccaatttctccccaataatagggatacgtcgtaaagtcgttgataggggtcgattatttttttagggctgtcgggcagaaaaatagacgttctacttctttttatctattgttgatagaggcgtttttgcgttacgggggcttgttctccggtttcatcggacagcgatcgttttttacttgaaggaatattttcttaagatgaaggatcatttccctatgatagacgaccaaaagaaggcttttcttttaccgaataacaatcatctgatttttctcctgttgtaaaaaaagaaaccgacggtaatcacttacggccggctcctgaaaagaaatttatttgacttacgtggtttactgtttataatagatctcgattataaaaacattttttctatcgcgatcttttaaaaattcacagtgcaaagatacggcggcttattgcgctccgcaatccccattttaggggaaattttgcgcttatgtcgccaataatggctagtttatgattcaaaaagtcggggaagtgtgccgaatatataatatttttgccttgtgagacattttttcgagtccttacaagtgttgttcggctagtcttacaaaccgggataggcaaagatagcggaaagtgtcggttacccaatggatgctttgaaaaaagtgtcggacaatgtttattatgtgttttaaatgctttgtttattgaattttatcttttatcggttgtaaaaaagcatttatccggagagaagacgaggggtttgtttttctctcccgattgatgtacttttgcggcctcaagaaacacagcataacacaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF3077:TF3078|TF3077:TF3078:tonB-dependent receptor HmuY:ribonucleoside diphosphate reductase, alpha subunit:->->:3305827..3306748 922 aatttaaatacctaatgtttttaattaatttttattttacgggtgcaaaagtagaggtgttcgccaaagggggcaatcccgaattgtcggtattttatgccaatttctccccaataatagggatacgtcgtaaagtcgttgataggggtcgattatttttttagggctgtcgggcagaaaaatagacgttctacttctttttatctattgttgatagaggcgtttttgcgttacgggggcttgttctccggtttcatcggacagcgatcgttttttacttgaaggaatattttcttaagatgaaggatcatttccctatgatagacgaccaaaagaaggcttttcttttaccgaataacaatcatctgatttttctcctgttgtaaaaaaagaaaccgacggtaatcacttacggccggctcctgaaaagaaatttatttgacttacgtggtttactgtttataatagatctcgattataaaaacattttttctatcgcgatcttttaaaaattcacagtgcaaagatacggcggcttattgcgctccgcaatccccattttaggggaaattttgcgcttatgtcgccaataatggctagtttatgattcaaaaagtcggggaagtgtgccgaatatataatatttttgccttgtgagacattttttcgagtccttacaagtgttgttcggctagtcttacaaaccgggataggcaaagatagcggaaagtgtcggttacccaatggatgctttgaaaaaagtgtcggacaatgtttattatgtgttttaaatgctttgtttattgaattttatcttttatcggttgtaaaaaagcatttatccggagagaagacgaggggtttgtttttctctcccgattgatgtacttttgcggcctcaagaaacacagcataacacaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aatttaaatacctaatgtttttaattaatttttattttacgggtgcaaaagtagaggtgttcgccaaagggggcaatcccgaattgtcggtattttatgccaatttctccccaataatagggatacgtcgtaaagtcgttgataggggtcgattatttttttagggctgtcgggcagaaaaatagacgttctacttctttttatctattgttgatagaggcgtttttgcgttacgggggcttgttctccggtttcatcggacagcgatcgttttttacttgaaggaatattttcttaagatgaaggatcatttccctatgatagacgaccaaaagaaggcttttcttttaccgaataacaatcatctgatttttctcctgttgtaaaaaaagaaaccgacggtaatcacttacggccggctcctgaaaagaaatttatttgacttacgtggtttactgtttataatagatctcgattataaaaacattttttctatcgcgatcttttaaaaattcacagtgcaaagatacggcggcttattgcgctccgcaatccccattttaggggaaattttgcgcttatgtcgccaataatggctagtttatgattcaaaaagtcggggaagtgtgccgaatatataatatttttgccttgtgagacattttttcgagtccttacaagtgttgttcggctagtcttacaaaccgggataggcaaagatagcggaaagtgtcggttacccaatggatgctttgaaaaaagtgtcggacaatgtttattatgtgttttaaatgctttgtttattgaattttatcttttatcggttgtaaaaaagcatttatccggagagaagacgaggggtttgtttttctctcccgattgatgtacttttgcggcctcaagaaacacagcataacacaaa Predict ORF larger than 30AA ================================================ Protein_Len: 49 Strand: + Start: 15 End: 161 .............. M F L I N F Y F T G A K V E V F A K G G N P E L S V F Y A N F S P I I G I R R K V V D R G R L F F ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 139 End: 279 .......................................................................................................................................... M I G V D Y F F R A V G Q K N R R S T S F Y L L L I E A F L R Y G G L F S G F I G Q R S F F T ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 59 Strand: + Start: 207 End: 383 .............................................................................................................................................................................................................. M V D R G V F A L R G L V L R F H R T A I V F Y L K E Y F L K M K D H F P M I D D Q K K A F L L P N N N H L I F L L L ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 405 End: 506 .................................................................................................................................................................................................................................................................................................................................................................................................................... M T Y G R L L K R N L F D L R G L L F I I D L D Y K N I F S I A I F ................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 31 Strand: + Start: 469 End: 561 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S I I K T F F L S R S F K N S Q C K D T A A Y C A P Q S P F ......................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 512 End: 604 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M H S A K I R R L I A L R N P H F R G N F A L M S P I M A S L .............................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 638 End: 880 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M I F L P C E T F F R V L T S V V R L V L Q T G I G K D S G K C R L P N G C F E K S V G Q C L L C V L N A L F I E F Y L .......................................... Protein_Len: 38 Strand: + Start: 808 End: 921 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L S F I G C K K A F I R R E D E G F V F L S R L M Y F C G L K K H S I T Q . Protein_Len: 36 Strand: - Start: 814 End: 921 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. R K D T T F F C K D P S F V L P K N K E G S Q H V K A A E L F V A Y C M . Protein_Len: 37 Strand: - Start: 804 End: 914 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q I K D K I P Q L F A N I R L S S S P N T K R E R N I Y K Q P R L F C L M ........ Protein_Len: 35 Strand: - Start: 678 End: 782 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L H Q E A L R V F R S L C L Y R F T D T V W H I S Q F F H R V I N I M ............................................................................................................................................ Protein_Len: 60 Strand: - Start: 517 End: 804 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... H A S Y I I N K G Q S V N K R T R V L T T R S T K C V P I P L S L P F H R N G L P H K S F L T P C H K N H T K F A K N M ...................................................................................................................... Protein_Len: 33 Strand: - Start: 234 End: 332 ......................................................................................................................................................................................................................................... P P K N E P K M P C R D N K V Q L F I K K L H L I M E R H Y V V M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 55 Strand: - Start: 40 End: 204 ....................................... P H L L L P T R W L P C D R I T P I K H W N R G L L L S V D Y L R Q Y P D I I K K P S D P L F I S T R S R K M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 40 Strand: - Start: 24 End: 143 ....................... N I K I K R T C F Y L H E G F P A I G F Q R Y K I G I E G W Y Y P Y T T F D N M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aatttaaatacctaatgtttttaattaatttttattttacgggtgcaaaagtagaggtgttcgccaaagggggcaatcccgaattgtcggtattttatgccaatttctccccaataatagggatacgtcgtaaagtcgttgataggggtcgattatttttttagggctgtcgggcagaaaaatagacgttctacttctttttatctattgttgatagaggcgtttttgcgttacgggggcttgttctccggtttcatcggacagcgatcgttttttacttgaaggaatattttcttaagatgaaggatcatttccctatgatagacgaccaaaagaaggcttttcttttaccgaataacaatcatctgatttttctcctgttgtaaaaaaagaaaccgacggtaatcacttacggccggctcctgaaaagaaatttatttgacttacgtggtttactgtttataatagatctcgattataaaaacattttttctatcgcgatcttttaaaaattcacagtgcaaagatacggcggcttattgcgctccgcaatccccattttaggggaaattttgcgcttatgtcgccaataatggctagtttatgattcaaaaagtcggggaagtgtgccgaatatataatatttttgccttgtgagacattttttcgagtccttacaagtgttgttcggctagtcttacaaaccgggataggcaaagatagcggaaagtgtcggttacccaatggatgctttgaaaaaagtgtcggacaatgtttattatgtgttttaaatgctttgtttattgaattttatcttttatcggttgtaaaaaagcatttatccggagagaagacgaggggtttgtttttctctcccgattgatgtacttttgcggcctcaagaaacacagcataacacaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aatttaaatacctaatgtttttaattaatttttattttacgggtgcaaaagtagaggtgttcgccaaagggggcaatcccgaattgtcggtattttatgccaatttctccccaataatagggatacgtcgtaaagtcgttgataggggtcgattatttttttagggctgtcgggcagaaaaatagacgttctacttctttttatctattgttgatagaggcgtttttgcgttacgggggcttgttctccggtttcatcggacagcgatcgttttttacttgaaggaatattttcttaagatgaaggatcatttccctatgatagacgaccaaaagaaggcttttcttttaccgaataacaatcatctgatttttctcctgttgtaaaaaaagaaaccgacggtaatcacttacggccggctcctgaaaagaaatttatttgacttacgtggtttactgtttataatagatctcgattataaaaacattttttctatcgcgatcttttaaaaattcacagtgcaaagatacggcggcttattgcgctccgcaatccccattttaggggaaattttgcgcttatgtcgccaataatggctagtttatgattcaaaaagtcggggaagtgtgccgaatatataatatttttgccttgtgagacattttttcgagtccttacaagtgttgttcggctagtcttacaaaccgggataggcaaagatagcggaaagtgtcggttacccaatggatgctttgaaaaaagtgtcggacaatgtttattatgtgttttaaatgctttgtttattgaattttatcttttatcggttgtaaaaaagcatttatccggagagaagacgaggggtttgtttttctctcccgattgatgtacttttgcggcctcaagaaacacagcataacacaaa Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 45 HP_score: -3.6 Tail_Score: -2.83403 Start: 234 End: 250 Full_Region: GGCGTTTTTGCGTTA CGGGGG CTTGT TCTCCG GTTTCATCGGACAGC .........................................................................................................................................................................................................................................CGGGGGCTTGTTCTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -8.0 Tail_Score: -5.40072 Start: 392 End: 423 Full_Region: ataaatttcttttca ggagccggccgtaa gtga ttaccgtcggtttc tttttttacaacagg .......................................................................................................................................................................................................................................................................................................................................................................................................ggagccggccgtaagtgattaccgtcggtttc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TF3077:TF3078|TF3077:TF3078:tonB-dependent receptor HmuY:ribonucleoside diphosphate reductase, alpha subunit:->->:3305827..3306748 922 aatttaaatacctaatgtttttaattaatttttattttacgggtgcaaaagtagaggtgttcgccaaagggggcaatcccgaattgtcggtattttatgccaatttctccccaataatagggatacgtcgtaaagtcgttgataggggtcgattatttttttagggctgtcgggcagaaaaatagacgttctacttctttttatctattgttgatagaggcgtttttgcgttacgggggcttgttctccggtttcatcggacagcgatcgttttttacttgaaggaatattttcttaagatgaaggatcatttccctatgatagacgaccaaaagaaggcttttcttttaccgaataacaatcatctgatttttctcctgttgtaaaaaaagaaaccgacggtaatcacttacggccggctcctgaaaagaaatttatttgacttacgtggtttactgtttataatagatctcgattataaaaacattttttctatcgcgatcttttaaaaattcacagtgcaaagatacggcggcttattgcgctccgcaatccccattttaggggaaattttgcgcttatgtcgccaataatggctagtttatgattcaaaaagtcggggaagtgtgccgaatatataatatttttgccttgtgagacattttttcgagtccttacaagtgttgttcggctagtcttacaaaccgggataggcaaagatagcggaaagtgtcggttacccaatggatgctttgaaaaaagtgtcggacaatgtttattatgtgttttaaatgctttgtttattgaattttatcttttatcggttgtaaaaaagcatttatccggagagaagacgaggggtttgtttttctctcccgattgatgtacttttgcggcctcaagaaacacagcataacacaaa Intra-Species Hit: Count: 1 Min: 40 Max: 922 Len: 883 Subject: tfor_TF3077_TF3078|tonB-dependent receptor HmuY:ribonucleoside diphosphate reductase, alpha subunit|POSITIVE:POSITIVE|[3305827,3306748]|922 HSP 1 e-value: 0.0 bit: 1667.0 Len: 883 Query Start:40 Query End:922 Subject Strand: POSITIVE Subject Start: 40 Subject End: 922 .......................................cgggtgcaaaagtagaggtgttcgccaaagggggcaatcccgaattgtcggtattttatgccaatttctccccaataatagggatacgtcgtaaagtcgttgataggggtcgattannnnnnnagggctgtcgggcagaaaaatagacgttctacttctttttatctattgttgatagaggcgtttttgcgttacgggggcttgttctccggtttcatcggacagcgatcgttttttacttgaaggaatattttcttaagatgaaggatcatttccctatgatagacgaccaaaagaaggcttttcttttaccgaataacaatcatctgatttttctcctgttgtnnnnnnngaaaccgacggtaatcacttacggccggctcctgaaaagaaatttatttgacttacgtggtttactgtttataatagatctcgattataaaaacattttttctatcgcgatcttttaaaaattcacagtgcaaagatacggcggcttattgcgctccgcaatccccattttaggggaaattttgcgcttatgtcgccaataatggctagtttatgattcaaaaagtcggggaagtgtgccgaatatataatatttttgccttgtgagacattttttcgagtccttacaagtgttgttcggctagtcttacaaaccgggataggcaaagatagcggaaagtgtcggttacccaatggatgctttgaaaaaagtgtcggacaatgtttattatgtgttttaaatgctttgtttattgaattttatcttttatcggttgtaaaaaagcatttatccggagagaagacgaggggtttgtttttctctcccgattgatgtacttttgcggcctcaagaaacacagcataacacaaa .......................................cgggtgcaaaagtagaggtgttcgccaaagggggcaatcccgaattgtcggtattttatgccaatttctccccaataatagggatacgtcgtaaagtcgttgataggggtcgattatttttttagggctgtcgggcagaaaaatagacgttctacttctttttatctattgttgatagaggcgtttttgcgttacgggggcttgttctccggtttcatcggacagcgatcgttttttacttgaaggaatattttcttaagatgaaggatcatttccctatgatagacgaccaaaagaaggcttttcttttaccgaataacaatcatctgatttttctcctgttgtaaaaaaagaaaccgacggtaatcacttacggccggctcctgaaaagaaatttatttgacttacgtggtttactgtttataatagatctcgattataaaaacattttttctatcgcgatcttttaaaaattcacagtgcaaagatacggcggcttattgcgctccgcaatccccattttaggggaaattttgcgcttatgtcgccaataatggctagtttatgattcaaaaagtcggggaagtgtgccgaatatataatatttttgccttgtgagacattttttcgagtccttacaagtgttgttcggctagtcttacaaaccgggataggcaaagatagcggaaagtgtcggttacccaatggatgctttgaaaaaagtgtcggacaatgtttattatgtgttttaaatgctttgtttattgaattttatcttttatcggttgtaaaaaagcatttatccggagagaagacgaggggtttgtttttctctcccgattgatgtacttttgcggcctcaagaaacacagcataacacaaa Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGGGUGCAAAAGUAGAGGUGUUCGCCAAAGGGGGCAAUCCCGAAUUGUCGGUAUUUUAUGCCAAUUUCUCCCCAAUAAUAGGGAUACGUCGUAAAGUCGUUGAUAGGGGUCGAUUAUUUUUUUAGGGCUGUCGGGCAGAAAAAUAGACGUUCUACUUCUUUUUAUCUAUUGUUGAUAGAGGCGUUUUUGCGUUACGGGGGCUUGUUCUCCGGUUUCAUCGGACAGCGAUCGUUUUUUACUUGAAGGAAUAUUUUCUUAAGAUGAAGGAUCAUUUCCCUAUGAUAGACGACCAAAAGAAGGCUUUUCUUUUACCGAAUAACAAUCAUCUGAUUUUUCUCCUGUUGUAAAAAAAGAAACCGACGGUAAUCACUUACGGCCGGCUCCUGAAAAGAAAUUUAUUUGACUUACGUGGUUUACUGUUUAUAAUAGAUCUCGAUUAUAAAAACAUUUUUUCUAUCGCGAUCUUUUAAAAAUUCACAGUGCAAAGAUACGGCGGCUUAUUGCGCUCCGCAAUCCCCAUUUUAGGGGAAAUUUUGCGCUUAUGUCGCCAAUAAUGGCUAGUUUAUGAUUCAAAAAGUCGGGGAAGUGUGCCGAAUAUAUAAUAUUUUUGCCUUGUGAGACAUUUUUUCGAGUCCUUACAAGUGUUGUUCGGCUAGUCUUACAAACCGGGAUAGGCAAAGAUAGCGGAAAGUGUCGGUUACCCAAUGGAUGCUUUGAAAAAAGUGUCGGACAAUGUUUAUUAUGUGUUUUAAAUGCUUUGUUUAUUGAAUUUUAUCUUUUAUCGGUUGUAAAAAAGCAUUUAUCCGGAGAGAAGACGAGGGGUUUGUUUUUCUCUCCCGAUUGAUGUACUUUUGCGGCCUCAAGAAACACAGCAUAACACAAA .(((((.................(((......)))....((((.((..((.((((((.((((.((..(..(((.......))).......((((.((((((.(((((((..((((....(((((((((((((.((..((((....(((((...((.((((..((((.......)))))))).))....))))).((((((.....)))))).)))).)).))))))..((.(((.......))).)).......))))))).....))))...)))))))....)))))).((((((((...)))))))).((((((((((.......(((((......(((((((((...(((((((..((((...........))))....((....))...................))))).)).)))))))))((((.((((...((((....))))...)))).)))).........(((((((.(((((((((.((((((.....((((.......(((((......)))))......))))....)))))).....((((((.(((.(((((.....)))))..))).)).)))).........))))))))).)))))))..........)))))........))))))))))......)))).....)..)).)))))))))).))..))...)))).)))))....((((((((....))))))))...............((((((....(((((.(((((.((((...............((((((((((..(((((.(((.((((((((((((((...)))).)))))))))).))).)))))..)))))))))))))).))))).))))))))))).. (-247.24) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUGUGUUAUGCUGUGUUUCUUGAGGCCGCAAAAGUACAUCAAUCGGGAGAGAAAAACAAACCCCUCGUCUUCUCUCCGGAUAAAUGCUUUUUUACAACCGAUAAAAGAUAAAAUUCAAUAAACAAAGCAUUUAAAACACAUAAUAAACAUUGUCCGACACUUUUUUCAAAGCAUCCAUUGGGUAACCGACACUUUCCGCUAUCUUUGCCUAUCCCGGUUUGUAAGACUAGCCGAACAACACUUGUAAGGACUCGAAAAAAUGUCUCACAAGGCAAAAAUAUUAUAUAUUCGGCACACUUCCCCGACUUUUUGAAUCAUAAACUAGCCAUUAUUGGCGACAUAAGCGCAAAAUUUCCCCUAAAAUGGGGAUUGCGGAGCGCAAUAAGCCGCCGUAUCUUUGCACUGUGAAUUUUUAAAAGAUCGCGAUAGAAAAAAUGUUUUUAUAAUCGAGAUCUAUUAUAAACAGUAAACCACGUAAGUCAAAUAAAUUUCUUUUCAGGAGCCGGCCGUAAGUGAUUACCGUCGGUUUCUUUUUUUACAACAGGAGAAAAAUCAGAUGAUUGUUAUUCGGUAAAAGAAAAGCCUUCUUUUGGUCGUCUAUCAUAGGGAAAUGAUCCUUCAUCUUAAGAAAAUAUUCCUUCAAGUAAAAAACGAUCGCUGUCCGAUGAAACCGGAGAACAAGCCCCCGUAACGCAAAAACGCCUCUAUCAACAAUAGAUAAAAAGAAGUAGAACGUCUAUUUUUCUGCCCGACAGCCCUAAAAAAAUAAUCGACCCCUAUCAACGACUUUACGACGUAUCCCUAUUAUUGGGGAGAAAUUGGCAUAAAAUACCGACAAUUCGGGAUUGCCCCCUUUGGCGAACACCUCUACUUUUGCACCCG ..(((((((((((.(((((.(((((............(((..(((.((((((((..((.........)).)))))))).)))..))).((((((((....).))))))).....))))).))))).)))))....)))))).........((((..((((.(((((((..((..(((.((((....))))....(((.((((((((.(((......)))....)))).)))).)))............))))).)))))))))))..)))).((((((.......................(((((.((.(((............((((....)))).......((.(((..(((((((...((((((((((((((.(.((.....))).))))).......(((((.......(((.(((((.((((..((((.....))))...)))).))))).)))...)))))......((((((((..........((((((.(((((((((.((((....)))).)))))))))...((((((....(((....((((....))))....))).)))))))))))).........(((((..(((..(((((....((((......((((((.........))).)))........)))).(((((.........(((.(........))))....(((........(((((.....))))).....((((((((.....)))))))).)))..)))))))))).....)))..))))).........))).)))))....)))))))))...)))))))..))))).........))).)).))))).(((((......)))))..........))))))..... (-209.14) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 489 230 182 214 169 tfor:TF2682|5end_N_utilization_substance_protein_A_2856308..2856538_POSITIVE 432 867 824 95 39 tfor:TF1934|5end_hypothetical_protein_2083787..2084017_POSITIVE 418 688 642 150 103 tfor:TF2272|5end_conserved_hypothetical_protein_2436156..2436386_POSITIVE 399 230 183 46 1 tfor:TF1174|5end_ABC_transporter,_permease_component_1256584..1256814_POSITIVE 398 217 180 150 116 tfor:TF2886|5end_RNA_methylase_SpoU_family_3075651..3075881_POSITIVE 382 229 182 223 167 tfor:TF2455|5end_conserved_hypothetical_protein;_possible_membrane_protein_2631959..2632189_POSITIVE 379 236 196 174 114 tfor:TF3081|5end_ISPg7,_transposase_3314517..3314747_POSITIVE 378 230 182 159 108 tfor:TF2229.1|5end_rteR_regulatory_ortholog_(with_internal_stop)_2399454..2399684_POSITIVE 377 227 182 64 20 tfor:TF2446|5end_riboflavin-specific_deaminase_2622370..2622600_POSITIVE 375 227 181 171 126 tfor:TF0693|5end_sigma-54_dependent_transcriptional_regulator_736902..737132_POSITIVE 373 227 181 186 126 tfor:TF0431|5end_hypothetical_protein_452178..452408_POSITIVE 373 227 181 171 111 tfor:TF0430|5end_hypothetical_protein_452163..452393_POSITIVE 372 232 195 169 134 tfor:TF2077|5end_conserved_hypothetical_protein;_possible_chromosome_segregation_ATPase_2243312..2243542_POSITIVE 371 702 665 172 125 tfor:TF2534|5end_conserved_hypothetical_protein_2717044..2717274_POSITIVE 371 538 491 85 28 tfor:TF1196|5end_acetyl-coenzyme_A_synthetase_1279064..1279294_POSITIVE 370 228 182 174 122 tfor:TF0215|5end_tRNA/rRNA_methyltransferase,_TrmH_family_241463..241693_POSITIVE 369 229 182 85 30 tfor:TF0962|5end_possible_amidohydrolase_1011593..1011823_POSITIVE 368 409 362 95 38 tfor:TF2649|5end_fumarate_reductase/succinate_dehydrogenase,_flavoprotein_subunit_2819002..2819232_POSITIVE 367 227 182 200 162 tfor:TF0971|5end_conserved_hypothetical_protein_1021355..1021585_POSITIVE 366 50 1 206 149 tfor:TF0712|5end_TPR-repeat-containing_protein_761348..761578_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 432 867 824 109 53 tfor:TF1935|3end_ATP-dependent_RNA_helicase,_DEAD/DEAH-related_helicase_2083881..2084031_POSITIVE 418 688 642 101 54 tfor:TF2271|3end_conserved_hypothetical_protein_2436187..2436337_POSITIVE 383 43 1 99 52 tfor:TF1167|3end_hypothetical_protein_1248932..1249082_POSITIVE 380 239 196 142 93 tfor:TF2893|3end_conserved_hypothetical_protein;_possible_phosphoesterase_3082039..3082189_POSITIVE 377 840 793 85 31 tfor:TF3165|3end_thiol:disulfide_interchange_protein,_thioredoxin_family_protein_3405343..3405493_POSITIVE 371 702 665 62 15 tfor:TF2533|3end_adenylosuccinate_synthetase_2717014..2717164_POSITIVE 369 228 181 98 54 tfor:TF2189|3end_conserved_hypothetical_protein_2364884..2365034_POSITIVE 369 229 182 85 30 tfor:TF0961|3end_translation_initiation_inhibitor,_endoribonuclease_activity_1011673..1011823_POSITIVE 357 228 181 141 84 tfor:TF0685|3end_hypothetical_protein_731132..731282_POSITIVE 354 50 1 97 35 tfor:TF3000|3end_hypothetical_protein_3216740..3216890_POSITIVE 352 233 198 80 39 tfor:TF3013|3end_conserved_hypothetical_protein_3237539..3237689_POSITIVE 351 230 187 138 88 tfor:TF0429|3end_ABC_transporter,_ATP-binding_protein_452227..452377_POSITIVE 350 520 474 150 103 tfor:TF2685|3end_iron-regulated_ABC-type_transporter_membrane_component_2862725..2862875_POSITIVE 346 529 489 117 73 tfor:TF1182|3end_hypothetical_protein_1268938..1269088_POSITIVE 344 540 491 61 4 tfor:TF0821|3end_hypothetical_protein_880195..880345_POSITIVE 344 540 491 80 23 tfor:TF0370|3end_hypothetical_protein_386317..386467_POSITIVE 342 537 491 59 12 tfor:TF2883|3end_peptidyl-prolyl_cis-trans_isomerase_3075129..3075279_POSITIVE 342 729 683 140 96 tfor:TF2489|3end_hypothetical_protein_2664698..2664848_POSITIVE 338 47 1 120 68 tfor:TF0946|3end_iron(III)_ABC_transporter,_periplasmic_iron-binding_protein_990698..990848_POSITIVE 336 698 651 70 22 tfor:TF1400|3end_polysaccharide_biosynthesis_protein;_membrane_protein_1476573..1476723_POSITIVE