Origin IGS: acggagacataaggagttattatgtaggtgttaataaatgtaaataggggggggtaaattgaggcgttatcggtcgggtgtcagggtgcgagacacggttcgttgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaattttccaagttagataatgagcaaattactcaaatacacctccacttttctctttcaaaacgattcatcggcgttttttatgttaccaaagacaggggggtgagctttttatgtacctttcctctaaaacgtattttgtgagtttgcttagattgctgctcaatccctcccaaattcggttgtttgggtgactataacacacgactgttggctccgtgacggtcggtgtgtctcggagattgcgaatataagtatgttactttcctctacaagcttgggtagcttatgccggtgtccgactccttccggtgtatctgtaaatttgcgaaacgggctactttgtgcaccacaaaggtaattacgtggcaccgaaaggtatatcaaatggcta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagccatttgatatacctttcggtgccacgtaattacctttgtggtgcacaaagtagcccgtttcgcaaatttacagatacaccggaaggagtcggacaccggcataagctacccaagcttgtagaggaaagtaacatacttatattcgcaatctccgagacacaccgaccgtcacggagccaacagtcgtgtgttatagtcacccaaacaaccgaatttgggagggattgagcagcaatctaagcaaactcacaaaatacgttttagaggaaaggtacataaaaagctcacccccctgtctttggtaacataaaaaacgccgatgaatcgttttgaaagagaaaagtggaggtgtatttgagtaatttgctcattatctaacttggaaaattgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcaacgaaccgtgtctcgcaccctgacacccgaccgataacgcctcaatttacccccccctatttacatttattaacacctacataataactccttatgtctccgt Mask Tandem Repeat Region ================================================ acggagacataaggagttattatgtaggtgttaataaatgtaaataggggggggtaaattgaggcgttatcggtcgggtgtcagggtgcgagacacggttcgttgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaattttccaagttagataatgagcaaattactcaaatacacctccacttttctctttcaaaacgattcatcggcgttttttatgttaccaaagacaggggggtgagctttttatgtacctttcctctaaaacgtattttgtgagtttgcttagattgctgctcaatccctcccaaattcggttgtttgggtgactataacacacgactgttggctccgtgacggtcggtgtgtctcggagattgcgaatataagtatgttactttcctctacaagcttgggtagcttatgccggtgtccgactccttccggtgtatctgtaaatttgcgaaacgggctactttgtgcaccacaaaggtaattacgtggcaccgaaaggtatatcaaatggcta Find is-nt database================================================ Query_seq: TF2999:TF3000|TF2999:TF3000:conserved hypothetical protein:hypothetical protein:->->:3215952..3216551 600 acggagacataaggagttattatgtaggtgttaataaatgtaaataggggggggtaaattgaggcgttatcggtcgggtgtcagggtgcgagacacggttcgttgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaattttccaagttagataatgagcaaattactcaaatacacctccacttttctctttcaaaacgattcatcggcgttttttatgttaccaaagacaggggggtgagctttttatgtacctttcctctaaaacgtattttgtgagtttgcttagattgctgctcaatccctcccaaattcggttgtttgggtgactataacacacgactgttggctccgtgacggtcggtgtgtctcggagattgcgaatataagtatgttactttcctctacaagcttgggtagcttatgccggtgtccgactccttccggtgtatctgtaaatttgcgaaacgggctactttgtgcaccacaaaggtaattacgtggcaccgaaaggtatatcaaatggcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF2999:TF3000|TF2999:TF3000:conserved hypothetical protein:hypothetical protein:->->:3215952..3216551 600 acggagacataaggagttattatgtaggtgttaataaatgtaaataggggggggtaaattgaggcgttatcggtcgggtgtcagggtgcgagacacggttcgttgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaattttccaagttagataatgagcaaattactcaaatacacctccacttttctctttcaaaacgattcatcggcgttttttatgttaccaaagacaggggggtgagctttttatgtacctttcctctaaaacgtattttgtgagtttgcttagattgctgctcaatccctcccaaattcggttgtttgggtgactataacacacgactgttggctccgtgacggtcggtgtgtctcggagattgcgaatataagtatgttactttcctctacaagcttgggtagcttatgccggtgtccgactccttccggtgtatctgtaaatttgcgaaacgggctactttgtgcaccacaaaggtaattacgtggcaccgaaaggtatatcaaatggcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF2999:TF3000|TF2999:TF3000:conserved hypothetical protein:hypothetical protein:->->:3215952..3216551 600 acggagacataaggagttattatgtaggtgttaataaatgtaaataggggggggtaaattgaggcgttatcggtcgggtgtcagggtgcgagacacggttcgttgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaattttccaagttagataatgagcaaattactcaaatacacctccacttttctctttcaaaacgattcatcggcgttttttatgttaccaaagacaggggggtgagctttttatgtacctttcctctaaaacgtattttgtgagtttgcttagattgctgctcaatccctcccaaattcggttgtttgggtgactataacacacgactgttggctccgtgacggtcggtgtgtctcggagattgcgaatataagtatgttactttcctctacaagcttgggtagcttatgccggtgtccgactccttccggtgtatctgtaaatttgcgaaacgggctactttgtgcaccacaaaggtaattacgtggcaccgaaaggtatatcaaatggcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 acggagacataaggagttattatgtaggtgttaataaatgtaaataggggggggtaaattgaggcgttatcggtcgggtgtcagggtgcgagacacggttcgttgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaattttccaagttagataatgagcaaattactcaaatacacctccacttttctctttcaaaacgattcatcggcgttttttatgttaccaaagacaggggggtgagctttttatgtacctttcctctaaaacgtattttgtgagtttgcttagattgctgctcaatccctcccaaattcggttgtttgggtgactataacacacgactgttggctccgtgacggtcggtgtgtctcggagattgcgaatataagtatgttactttcctctacaagcttgggtagcttatgccggtgtccgactccttccggtgtatctgtaaatttgcgaaacgggctactttgtgcaccacaaaggtaattacgtggcaccgaaaggtatatcaaatggcta Predict ORF larger than 30AA ================================================ Protein_Len: 45 Strand: + Start: 69 End: 203 .................................................................... M G R V S G C E T R F V A A C A S V R S V I D S V C L P L P F I D R S C L F V L Y G A K I ............................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 54 Strand: + Start: 58 End: 219 ......................................................... M E A L S V G C Q G A R H G S L R R A R P S V A L S I V S V C L C L S L T V P V Y L F F T V Q R Y N N F P S ............................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 38 Strand: + Start: 234 End: 347 ......................................................................................................................................................................................................................................... M T Q I H L H F S L S K R F I G V F Y V T K D R G V S F L C T F P L K R I L ............................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 272 End: 397 ............................................................................................................................................................................................................................................................................... M H R R F L C Y Q R Q G G E L F M Y L S S K T Y F V S L L R L L L N P S Q I R L F G ........................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 361 End: 564 ........................................................................................................................................................................................................................................................................................................................................................................ M A A Q S L P N S V V W V T I T H D C W L R D G R C V S E I A N I S M L L S S T S L G S L C R C P T P S G V S V N L R N .................................... Protein_Len: 35 Strand: + Start: 495 End: 599 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M P V S D S F R C I C K F A K R A T L C T T K V I T W H R K V Y Q M A . Protein_Len: 30 Strand: - Start: 479 End: 568 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L S P Y S I G T D S E K R H I Q L N A F R A V K H V V F T M ................................ Protein_Len: 60 Strand: - Start: 372 End: 593 ................................................................................................................................................................................................................................................................................................................................................................................... Q Q S R S P R H T E S I A F I L I N S E E V L K P L K H R H G V G E P T D T F K R F P S S Q A G C L Y N R P V S L Y I M ....... Protein_Len: 54 Strand: - Start: 295 End: 456 ...................................................................................................................................................................................................................................................................................................... W L C P P S S K I Y R E E L V Y K T L K S L N S S L G E W I R N N P H S Y C V V T P E T V T P T D R L N R M ................................................................................................................................................ Protein_Len: 31 Strand: - Start: 290 End: 382 ................................................................................................................................................................................................................................................................................................. T V L S L P T L K K H V K G R F R I K H T Q K S Q Q E I G G M .......................................................................................................................................................................................................................... Protein_Len: 47 Strand: - Start: 23 End: 163 ...................... T P T L L H L Y P P T F Q P T I P R T D P H S V R N T A A H A D T R L T I S L T Q R G R G K M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................... acggagacataaggagttattatgtaggtgttaataaatgtaaataggggggggtaaattgaggcgttatcggtcgggtgtcagggtgcgagacacggttcgttgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaattttccaagttagataatgagcaaattactcaaatacacctccacttttctctttcaaaacgattcatcggcgttttttatgttaccaaagacaggggggtgagctttttatgtacctttcctctaaaacgtattttgtgagtttgcttagattgctgctcaatccctcccaaattcggttgtttgggtgactataacacacgactgttggctccgtgacggtcggtgtgtctcggagattgcgaatataagtatgttactttcctctacaagcttgggtagcttatgccggtgtccgactccttccggtgtatctgtaaatttgcgaaacgggctactttgtgcaccacaaaggtaattacgtggcaccgaaaggtatatcaaatggcta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ acggagacataaggagttattatgtaggtgttaataaatgtaaataggggggggtaaattgaggcgttatcggtcgggtgtcagggtgcgagacacggttcgttgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaattttccaagttagataatgagcaaattactcaaatacacctccacttttctctttcaaaacgattcatcggcgttttttatgttaccaaagacaggggggtgagctttttatgtacctttcctctaaaacgtattttgtgagtttgcttagattgctgctcaatccctcccaaattcggttgtttgggtgactataacacacgactgttggctccgtgacggtcggtgtgtctcggagattgcgaatataagtatgttactttcctctacaagcttgggtagcttatgccggtgtccgactccttccggtgtatctgtaaatttgcgaaacgggctactttgtgcaccacaaaggtaattacgtggcaccgaaaggtatatcaaatggcta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 45 HP_score: -2.4 Tail_Score: -3.39036 Start: 101 End: 129 Full_Region: GTGCGAGACACGGTT CGTTGCGGCG TGCGCGTC CGTCCGTAGCG TTATCGATAGTGTCT ....................................................................................................CGTTGCGGCGTGCGCGTCCGTCCGTAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 42 HP_score: -2.6 Tail_Score: -2.88579 Start: 407 End: 437 Full_Region: TTTGGGTGACTATAA CACACGACTGTTG GCTCCG TGACGGTCGGTG TGTCTCGGAGATTGC ......................................................................................................................................................................................................................................................................................................................................................................................................................CACACGACTGTTGGCTCCGTGACGGTCGGTG................................................................................................................................................................... Find igs database================================================ Query_seq: TF2999:TF3000|TF2999:TF3000:conserved hypothetical protein:hypothetical protein:->->:3215952..3216551 600 acggagacataaggagttattatgtaggtgttaataaatgtaaataggggggggtaaattgaggcgttatcggtcgggtgtcagggtgcgagacacggttcgttgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaattttccaagttagataatgagcaaattactcaaatacacctccacttttctctttcaaaacgattcatcggcgttttttatgttaccaaagacaggggggtgagctttttatgtacctttcctctaaaacgtattttgtgagtttgcttagattgctgctcaatccctcccaaattcggttgtttgggtgactataacacacgactgttggctccgtgacggtcggtgtgtctcggagattgcgaatataagtatgttactttcctctacaagcttgggtagcttatgccggtgtccgactccttccggtgtatctgtaaatttgcgaaacgggctactttgtgcaccacaaaggtaattacgtggcaccgaaaggtatatcaaatggcta Intra-Species Hit: Count: 2 Min: 1 Max: 600 Len: 600 Subject: tfor_TF2999_TF3000|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3215952,3216551]|600 HSP 1 e-value: 0.0 bit: 1142.0 Len: 600 Query Start:1 Query End:600 Subject Strand: POSITIVE Subject Start: 1 Subject End: 600 acggagacataaggagttattatgtaggtgttaataaatgtaaatannnnnnnntaaattgaggcgttatcggtcgggtgtcagggtgcgagacacggttcgttgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaattttccaagttagataatgagcaaattactcaaatacacctccacttttctctttcaaaacgattcatcggcgttttttatgttaccaaagacaggggggtgagctttttatgtacctttcctctaaaacgtattttgtgagtttgcttagattgctgctcaatccctcccaaattcggttgtttgggtgactataacacacgactgttggctccgtgacggtcggtgtgtctcggagattgcgaatataagtatgttactttcctctacaagcttgggtagcttatgccggtgtccgactccttccggtgtatctgtaaatttgcgaaacgggctactttgtgcaccacaaaggtaattacgtggcaccgaaaggtatatcaaatggcta acggagacataaggagttattatgtaggtgttaataaatgtaaataggggggggtaaattgaggcgttatcggtcgggtgtcagggtgcgagacacggttcgttgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaattttccaagttagataatgagcaaattactcaaatacacctccacttttctctttcaaaacgattcatcggcgttttttatgttaccaaagacaggggggtgagctttttatgtacctttcctctaaaacgtattttgtgagtttgcttagattgctgctcaatccctcccaaattcggttgtttgggtgactataacacacgactgttggctccgtgacggtcggtgtgtctcggagattgcgaatataagtatgttactttcctctacaagcttgggtagcttatgccggtgtccgactccttccggtgtatctgtaaatttgcgaaacgggctactttgtgcaccacaaaggtaattacgtggcaccgaaaggtatatcaaatggcta Subject: tfor_TF1838_TF1839|tRNA/rRNA methyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1988806,1989486]|681 HSP 1 e-value: 7.0E-98 bit: 359.0 Len: 213 Query Start:1 Query End:213 Subject Strand: NEGATIVE Subject Start: 462 Subject End: 674 acggagacataaggagttattatgtaggtgttaataaatgtaaatannnnnnnntaaattgaggcgttatcggtcgggtgtcagggtgcgagacacggttcgttgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaatttt................................................................................................................................................................................................................................................................................................................................................................................................... acggagacataaggagttattatgtaggtgttaataaatgtaaataggggggggtaaattgaggcgttatcgttcgggtgtcagggtgcgagacacggttcgtcgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaatttt................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACGGAGACAUAAGGAGUUAUUAUGUAGGUGUUAAUAAAUGUAAAUAGGGGGGGGUAAAUUGAGGCGUUAUCGGUCGGGUGUCAGGGUGCGAGACACGGUUCGUUGCGGCGUGCGCGUCCGUCCGUAGCGUUAUCGAUAGUGUCUGUCUGCCUCUGCCUUUCAUUGACCGUUCCUGUUUAUUUGUUCUUUACGGUGCAAAGAUAUAACAAUUUUCCAAGUUAGAUAAUGAGCAAAUUACUCAAAUACACCUCCACUUUUCUCUUUCAAAACGAUUCAUCGGCGUUUUUUAUGUUACCAAAGACAGGGGGGUGAGCUUUUUAUGUACCUUUCCUCUAAAACGUAUUUUGUGAGUUUGCUUAGAUUGCUGCUCAAUCCCUCCCAAAUUCGGUUGUUUGGGUGACUAUAACACACGACUGUUGGCUCCGUGACGGUCGGUGUGUCUCGGAGAUUGCGAAUAUAAGUAUGUUACUUUCCUCUACAAGCUUGGGUAGCUUAUGCCGGUGUCCGACUCCUUCCGGUGUAUCUGUAAAUUUGCGAAACGGGCUACUUUGUGCACCACAAAGGUAAUUACGUGGCACCGAAAGGUAUAUCAAAUGGCUA ..(((.((((((.......))))))...(((((............(((.((((((.......(((((((.(((.(((..((((.(.(((((((......)).))))).).)).))..))).))))))))))...(((((...))))).)))))).))).((.((((((((...................))))).))).))..)))))....)))...........((((.......))))....(((((((.............((((((.........))))))...((((......)))).))))))).(((.((((((((((((((........(((..((((..(((((((.......(((((.(((((((.(((((((......))))))).(((....((((.((((((((........)))))))))))))))..)).)))))......(((((.(((...........))).))))).))))).((((((((.............))))))))...)))))))..))))))).(((((...((..(((.....))).))...)))))...))))))))))).))).))).. (-173.13) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGCCAUUUGAUAUACCUUUCGGUGCCACGUAAUUACCUUUGUGGUGCACAAAGUAGCCCGUUUCGCAAAUUUACAGAUACACCGGAAGGAGUCGGACACCGGCAUAAGCUACCCAAGCUUGUAGAGGAAAGUAACAUACUUAUAUUCGCAAUCUCCGAGACACACCGACCGUCACGGAGCCAACAGUCGUGUGUUAUAGUCACCCAAACAACCGAAUUUGGGAGGGAUUGAGCAGCAAUCUAAGCAAACUCACAAAAUACGUUUUAGAGGAAAGGUACAUAAAAAGCUCACCCCCCUGUCUUUGGUAACAUAAAAAACGCCGAUGAAUCGUUUUGAAAGAGAAAAGUGGAGGUGUAUUUGAGUAAUUUGCUCAUUAUCUAACUUGGAAAAUUGUUAUAUCUUUGCACCGUAAAGAACAAAUAAACAGGAACGGUCAAUGAAAGGCAGAGGCAGACAGACACUAUCGAUAACGCUACGGACGGACGCGCACGCCGCAACGAACCGUGUCUCGCACCCUGACACCCGACCGAUAACGCCUCAAUUUACCCCCCCCUAUUUACAUUUAUUAACACCUACAUAAUAACUCCUUAUGUCUCCGU .......((((((..((((((.(..(((((..........)))))..)........(.((((((((((((((..((((((((((.((....(((((.(...((.(((((((.....)))))))....((..(((((((((.............(((((.(((.........))).))))).........)))))))))..))..)).....((((((..((((.(((..(((((.((.......))............(((.((((....)))).)))........))))).)))))))..))))))............))))))...)).((((....))))........))))))))))...)))))))....................(((((...(((((((...)))))))...)))))...))))))).)...))))))..(((((.....((.....))..........(((.(((..(((.....)))........(((((.........)))))))).))).....)))))........................)))))).....((((((.......))))))...... (-144.95) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1197 130 81 228 179 tfor:TF1839|5end_conserved_hypothetical_protein_1989347..1989577_POSITIVE 1059 520 471 214 165 tfor:TF2383|5end_hypothetical_protein_2548300..2548530_POSITIVE 531 120 71 159 108 tfor:TF2849|5end_histidinol-phosphate_transaminase_3037288..3037518_POSITIVE 501 150 102 112 65 tfor:TF0971|5end_conserved_hypothetical_protein_1021355..1021585_POSITIVE 494 119 71 127 48 tfor:TF2013|5end_polysaccharide_deacetylase_2168650..2168880_POSITIVE 492 150 101 111 56 tfor:TF0600|5end_oxidoreductase/dehydrogenase_630083..630313_POSITIVE 491 108 61 135 77 tfor:TF3067|5end_conserved_hypothetical_protein_3292432..3292662_POSITIVE 484 120 71 224 175 tfor:TF1853|5end_homoserine_O-succinyltransferase_2006470..2006700_POSITIVE 484 119 71 187 143 tfor:TF1069|5end_glucokinase_regulatory_protein,_sugar_phosphate_isomerase_domain_1138884..1139114_POSITIVE 483 110 62 166 110 tfor:TF1919|5end_hypothetical_protein_2070037..2070267_POSITIVE 483 110 62 126 70 tfor:TF1917|5end_hypothetical_protein_2069997..2070227_POSITIVE 483 118 71 55 4 tfor:TF0091|5end_outer_membrane_protein_97701..97931_POSITIVE 482 120 71 184 132 tfor:TF0249|5end_3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl_carrier_protein)_dehydratase_278808..279038_POSITIVE 480 120 71 207 141 tfor:TF0601|5end_aminomethyltransferase_(glycine_cleavage_system_T_protein)_631081..631311_POSITIVE 476 157 111 196 157 tfor:TF1767|5end_3-dehydroquinate_synthase_1905492..1905722_POSITIVE 475 120 74 231 192 tfor:TF2440|5end_conserved_hypothetical_protein;_possible_DNA_mismatch_repair_protein_2616858..2617088_POSITIVE 470 519 476 200 164 tfor:TF1979|5end_conserved_hypothetical_protein_2127957..2128187_POSITIVE 459 120 71 157 99 tfor:TF1948|5end_conserved_hypothetical_protein_2095942..2096172_POSITIVE 455 120 72 182 119 tfor:TF0969|5end_oxidoreductase_1019550..1019780_POSITIVE 454 150 101 55 3 tfor:TF2186|5end_outer_membrane_protein_2360291..2360521_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 978 580 531 70 21 tfor:TF2382|3end_transposase_2548176..2548326_POSITIVE 494 119 71 117 38 tfor:TF2012|3end_conserved_hypothetical_protein_2168720..2168870_POSITIVE 492 150 101 78 23 tfor:TF0599|3end_hypothetical_protein_630130..630280_POSITIVE 488 120 71 69 8 tfor:TF0247|3end_conserved_hypothetical_protein_278348..278498_POSITIVE 461 125 82 78 31 tfor:TF0604|3end_hypothetical_protein_636196..636346_POSITIVE 456 89 46 140 105 tfor:TF1204|3end_possible_metal-dependent_membrane_protease_1287461..1287611_POSITIVE 449 110 62 148 98 tfor:TF1918|3end_hypothetical_protein_2070105..2070255_POSITIVE 449 119 72 69 15 tfor:TF1794|3end_possible_glucose-1-phosphatase_1935816..1935966_POSITIVE 448 110 64 52 4 tfor:TF1834|3end_3-isopropylmalate_dehydrogenase_1984311..1984461_POSITIVE 438 120 71 131 69 tfor:TF2774|3end_2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_pyrophosphokinase_2959719..2959869_POSITIVE 436 128 84 65 16 tfor:TF0776|3end_ABC_transporter,_permease_component_826173..826323_POSITIVE 433 120 71 151 89 tfor:TF0818|3end_bifunctional_protein:__aspartokinase_I;_homoserine_dehydrogenase_878517..878667_POSITIVE 431 120 71 68 5 tfor:TF2642|3end_acetylornithine_deacetylase_2811827..2811977_POSITIVE 429 118 71 148 111 tfor:TF0350|3end_hypothetical_protein_371101..371251_POSITIVE 425 90 45 144 97 tfor:TF0815|3end_conserved_hypothetical_protein_873974..874124_POSITIVE 424 120 73 59 16 tfor:TF0960|3end_beta-galactosidase_1010506..1010656_POSITIVE 417 120 71 136 77 tfor:TF0145|3end_glutamine_synthetase_154718..154868_POSITIVE 416 118 71 89 44 tfor:TF0788|3end_protein-export_membrane_protein_841370..841520_POSITIVE 415 110 63 148 103 tfor:TF1157|3end_glutamate_synthase,_small_subunit_1239588..1239738_POSITIVE 415 149 105 143 96 tfor:TF0071|3end_conserved_hypothetical_protein_80871..81021_POSITIVE