Origin IGS: cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaatgtta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taacattaatggttaattgtcaattgttaatggttatgccgggtacacggaatccgaacgccgccctttgtcattccgaacgtagtgaggaatctcacggggaagagggaagagattcttcgcttacgctctgaatgacaaattaatggttaattgttatgcgtggttatccgaacgcaaatttcgcaaatgacgcgaatcaacgcaaataaccgcgtttgtcattccgaacgccaccctttgtcattccgaacgtagtgaggaatcccgtggggaaaggaaaaagattcttcgcttacgctctgaatgacaaattaatggttaattgttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgaccattcatttcggcgttcgtccatgggcctcgggcg Mask Tandem Repeat Region ================================================ cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaatgtta Find is-nt database================================================ Query_seq: TF2921:TF2922|TF2921:TF2922:hypothetical protein:surface antigen BspA:->->:3118851..3119261 411 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaatgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF2921:TF2922|TF2921:TF2922:hypothetical protein:surface antigen BspA:->->:3118851..3119261 411 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaatgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF2921:TF2922|TF2921:TF2922:hypothetical protein:surface antigen BspA:->->:3118851..3119261 411 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaatgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaatgtta Predict ORF larger than 30AA ================================================ Protein_Len: 38 Strand: + Start: 269 End: 382 ............................................................................................................................................................................................................................................................................ M C H S E R K R R I S S L F P V R F L T T F G M T K G G V R I P C T R H N H ............................. Protein_Len: 41 Strand: - Start: 281 End: 403 ........................................................................................................................................................................................................................................................................................ L T L S S D R G E E G H S E E S R E S H C L A A N P N R T G P M V M L L Q C N V M ........ Protein_Len: 33 Strand: - Start: 222 End: 320 ............................................................................................................................................................................................................................. K R F K R E S L W A Y C N V M L K D N L A Y A F F R K G R G R S M ........................................................................................... Protein_Len: 34 Strand: - Start: 157 End: 258 ............................................................................................................................................................ T R F S L P H R E S H C V R N N A N I R T M Q S I Q T R I V V C L M ......................................................................................................................................................... Protein_Len: 33 Strand: - Start: 105 End: 203 ........................................................................................................ E S R L R L I K K R E G R S E E S R E S H C L T A N P I V F A T M ................................................................................................................................................................................................................ Protein_Len: 49 Strand: - Start: 47 End: 193 .............................................. K R F V H N P T Y W A Y C N V M L K D N L A Y A F F R K G K G V P N R V V N P I V F P P T R F S M .......................................................................................................................................................................................................................... cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaatgtta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaatgtta Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TF2921:TF2922|TF2921:TF2922:hypothetical protein:surface antigen BspA:->->:3118851..3119261 411 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaatgtta Intra-Species Hit: Count: 31 Min: 1 Max: 411 Len: 411 Subject: tfor_TF2921_TF2922|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[3118851,3119261]|411 HSP 1 e-value: 0.0 bit: 815.0 Len: 411 Query Start:1 Query End:411 Subject Strand: POSITIVE Subject Start: 1 Subject End: 411 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaatgtta cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaatgtta Subject: tfor_TF2922_TF2923|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[3121599,3122307]|709 HSP 1 e-value: 5.0E-67 bit: 256.0 Len: 140 Query Start:36 Query End:175 Subject Strand: POSITIVE Subject Start: 358 Subject End: 498 ...................................gtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcct-ttccccacgggattcctcactacgttcggaatgacaaaggg............................................................................................................................................................................................................................................ ...................................gtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctctttcctcttccccacgggattcctcactacgttcggaatgacaaaggg............................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-42 bit: 174.0 Len: 104 Query Start:245 Query End:348 Subject Strand: POSITIVE Subject Start: 395 Subject End: 498 ....................................................................................................................................................................................................................................................accacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaaggg............................................................... ....................................................................................................................................................................................................................................................accacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctctttcctcttccccacgggattcctcactacgttcggaatgacaaaggg............................................................... HSP 3 e-value: 8.0E-29 bit: 129.0 Len: 89 Query Start:179 Query End:267 Subject Strand: POSITIVE Subject Start: 480 Subject End: 568 ..................................................................................................................................................................................cgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccatt................................................................................................................................................ ..................................................................................................................................................................................cgttcggaatgacaaagggggttatttgcgtccattcgcgtcatttgcgaaatttgcgttcggataacccggcataacaattaaccatt................................................................................................................................................ HSP 4 e-value: 7.0E-14 bit: 79.8 Len: 44 Query Start:3 Query End:46 Subject Strand: POSITIVE Subject Start: 311 Subject End: 354 ..cccgaggcccatggacgaacgccgaaatgaatggtcaatggtta............................................................................................................................................................................................................................................................................................................................................................................. ..cccgaggcccatggacgaacaccgaaatgaatggtcaatggtta............................................................................................................................................................................................................................................................................................................................................................................. HSP 5 e-value: 4.0E-9 bit: 63.9 Len: 40 Query Start:368 Query End:407 Subject Strand: POSITIVE Subject Start: 546 Subject End: 585 ...............................................................................................................................................................................................................................................................................................................................................................................acccggcataaccattaacaattgacaattaaccattaat.... ...............................................................................................................................................................................................................................................................................................................................................................................acccggcataacaattaaccattgacaattaaccattaat.... HSP 6 e-value: 4.0E-9 bit: 63.9 Len: 48 Query Start:255 Query End:302 Subject Strand: POSITIVE Subject Start: 570 Subject End: 616 ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctctt............................................................................................................. ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagcgcg-aagcgatgaatctctt............................................................................................................. HSP 7 e-value: 3.0E-7 bit: 58.0 Len: 45 Query Start:83 Query End:127 Subject Strand: POSITIVE Subject Start: 570 Subject End: 613 ..................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatct............................................................................................................................................................................................................................................................................................ ..................................................................................acaattaaccattaatttgtcattcagcgcg-aagcgatgaatct............................................................................................................................................................................................................................................................................................ Subject: tfor_TF2823_TF2824|TPR-containing protein:nucleoside-transporting protein nupG|POSITIVE:POSITIVE|[3014398,3014840]|443 HSP 1 e-value: 1.0E-61 bit: 238.0 Len: 187 Query Start:83 Query End:269 Subject Strand: NEGATIVE Subject Start: 7 Subject End: 193 ..................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttccttt-ccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaa.............................................................................................................................................. ..................................................................................acaattaaccattaatttgtcattcagagcg-aagcgaagaatctcttcccttttccccgcgagattcctcactgcgttcggaatgacaaagggtggcgttcgtaatgacaaacacagttatttgcgttgattcgcgttatttgcgaaatttgcgttcggataacccggcataacaattgacaattaa.............................................................................................................................................. HSP 2 e-value: 4.0E-37 bit: 157.0 Len: 103 Query Start:255 Query End:357 Subject Strand: NEGATIVE Subject Start: 92 Subject End: 193 ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcg...................................................... ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcg-aagcgaagaatctcttcccttttccccgcgagattcctcactgcgttcggaatgacaaagggtggcgttcg...................................................... HSP 3 e-value: 2.0E-14 bit: 81.8 Len: 57 Query Start:351 Query End:407 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 234 ..............................................................................................................................................................................................................................................................................................................................................................gcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaat.... ..............................................................................................................................................................................................................................................................................................................................................................gcgttcggataccgtgtacccggcataacaattaacacctgacaattaaccattaat.... Subject: tfor_TF2914_TF2915|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3109704,3110561]|858 HSP 1 e-value: 4.0E-43 bit: 176.0 Len: 145 Query Start:256 Query End:400 Subject Strand: POSITIVE Subject Start: 202 Subject End: 345 ...............................................................................................................................................................................................................................................................caattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcggattccgtgtacccggcataaccattaacaattgacaattaac........... ...............................................................................................................................................................................................................................................................caattaaccattaatttgtcattcagagcg-aagcgaagaatcttttcccttttcgaggcgagattcctcacggtgttcggaatgacaaagggtgacgttcggattccgtgtacccggcataaccattaaccattgacaattaac........... HSP 2 e-value: 1.0E-18 bit: 95.6 Len: 103 Query Start:84 Query End:186 Subject Strand: POSITIVE Subject Start: 202 Subject End: 304 ...................................................................................caattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcc-tttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcgga................................................................................................................................................................................................................................. ...................................................................................caattaaccattaatttgtcattcagagcg-aagcgaagaatcttttcccttttcgaggcgagattcctcacggtgttcggaatgacaaagggtgacgttcgga................................................................................................................................................................................................................................. Subject: tfor_TF2997_TF2998|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[3211725,3211950]|226 HSP 1 e-value: 9.0E-38 bit: 159.0 Len: 104 Query Start:81 Query End:184 Subject Strand: POSITIVE Subject Start: 8 Subject End: 110 ................................................................................taacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaagggtggcgttcg................................................................................................................................................................................................................................... ................................................................................taacaattaaccattaatttgtcattcagagcg-aagcgaagaatctcattcttttccccacgggattcctcactacgttcggaatgacaaaggatggcgttcg................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-24 bit: 113.0 Len: 105 Query Start:253 Query End:357 Subject Strand: POSITIVE Subject Start: 8 Subject End: 110 ............................................................................................................................................................................................................................................................taacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggcggcgttcg...................................................... ............................................................................................................................................................................................................................................................taacaattaaccattaatttgtcattcagagcg-aagcgaagaatctcat-tcttttccccacgggattcctcactacgttcggaatgacaaaggatggcgttcg...................................................... Subject: tfor_TF2920_TF2921|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3117231,3118637]|1407 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 92 Query Start:84 Query End:175 Subject Strand: POSITIVE Subject Start: 396 Subject End: 488 ...................................................................................caattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcct-ttccccacgggattcctcactacgttcggaatgacaaaggg............................................................................................................................................................................................................................................ ...................................................................................caattaaccattaatttgtcattcagagcgtaagcgaagaatctctttcctctttcccacgggattcctcactgcgttcggaatgacaaaggg............................................................................................................................................................................................................................................ HSP 2 e-value: 9.0E-32 bit: 139.0 Len: 94 Query Start:256 Query End:349 Subject Strand: POSITIVE Subject Start: 396 Subject End: 489 ...............................................................................................................................................................................................................................................................caattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggc.............................................................. ...............................................................................................................................................................................................................................................................caattaaccattaatttgtcattcagagcgtaagcgaagaatctctttcctctttcccacgggattcctcactgcgttcggaatgacaaagggc.............................................................. HSP 3 e-value: 1.0E-30 bit: 135.0 Len: 80 Query Start:270 Query End:349 Subject Strand: POSITIVE Subject Start: 729 Subject End: 808 .............................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagggc.............................................................. .............................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctcttccctttcccccgtgagattcctcactgcgttcggaatgacaaagggc.............................................................. HSP 4 e-value: 5.0E-18 bit: 93.7 Len: 78 Query Start:98 Query End:175 Subject Strand: POSITIVE Subject Start: 729 Subject End: 807 .................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttt-ccccacgggattcctcactacgttcggaatgacaaaggg............................................................................................................................................................................................................................................ .................................................................................................tttgtcattcagagcgtaagcgaagaatctcttccctttcccccgtgagattcctcactgcgttcggaatgacaaaggg............................................................................................................................................................................................................................................ Subject: tfor_TF1578_TF1579|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1686477,1687028]|552 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 134 Query Start:60 Query End:193 Subject Strand: POSITIVE Subject Start: 1 Subject End: 143 ...........................................................tgattcggcgtgtaccacgcataac-------aattaaccattaatttgtcattcagagcgtaagcgaagaatct-ttttccttt-ccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaa.......................................................................................................................................................................................................................... ...........................................................tgattcggcgtgtaccacgcataacaattaacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttttcctttaccccgcgagattcctcactgcgttcggaatgacaagaggaagtgttcggaatgacaa.......................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-29 bit: 129.0 Len: 92 Query Start:253 Query End:344 Subject Strand: POSITIVE Subject Start: 29 Subject End: 121 ............................................................................................................................................................................................................................................................taacaattaaccattaatttgtcattcagagcgtaagcgaagaatctc-ttccctcttccccgtgagattcctcactacgttcggaatgacaa................................................................... ............................................................................................................................................................................................................................................................taacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttttcctttaccccgcgagattcctcactgcgttcggaatgacaa................................................................... HSP 3 e-value: 2.0E-20 bit: 101.0 Len: 90 Query Start:158 Query End:247 Subject Strand: POSITIVE Subject Start: 130 Subject End: 220 .............................................................................................................................................................gttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcg-tcatttgcgaaatttgcgttcggataacc.................................................................................................................................................................... .............................................................................................................................................................gttcggaatgacaagaggaggtgttcggaatgacaaagactgttatttgcgttgattcgcgcccatttgcgaaatttgcgttcggataacc.................................................................................................................................................................... HSP 4 e-value: 7.0E-17 bit: 89.7 Len: 114 Query Start:81 Query End:194 Subject Strand: POSITIVE Subject Start: 429 Subject End: 544 ................................................................................taacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttccttt--ccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaa......................................................................................................................................................................................................................... ................................................................................taaccattaacaattaatatgtcattcagagcgtgagcgatgaatctcttttcttttaccccgcgagattcctcactgcgttcggaatgacaagaggaagtgttcggaatgacaaa......................................................................................................................................................................................................................... HSP 5 e-value: 7.0E-17 bit: 89.7 Len: 92 Query Start:253 Query End:344 Subject Strand: POSITIVE Subject Start: 429 Subject End: 521 ............................................................................................................................................................................................................................................................taacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctctt-ccccgtgagattcctcactacgttcggaatgacaa................................................................... ............................................................................................................................................................................................................................................................taaccattaacaattaatatgtcattcagagcgtgagcgatgaatctcttttcttttaccccgcgagattcctcactgcgttcggaatgacaa................................................................... Subject: tfor_TF1841_TF1842|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1992328,1992710]|383 HSP 1 e-value: 8.0E-29 bit: 129.0 Len: 89 Query Start:255 Query End:343 Subject Strand: NEGATIVE Subject Start: 11 Subject End: 99 ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgaca.................................................................... ..............................................................................................................................................................................................................................................................acaattaacaattactttgtcattcagagcgtaagcgaagaatctctttcctcttcctcgcgagattcctcactgcgttcggaatgaca.................................................................... HSP 2 e-value: 1.0E-27 bit: 125.0 Len: 79 Query Start:270 Query End:348 Subject Strand: NEGATIVE Subject Start: 279 Subject End: 357 .............................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaaggg............................................................... .............................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctctttcctcttcctcgcgagattcctcactgcgttcggaatgacaaaggg............................................................... HSP 3 e-value: 1.0E-21 bit: 105.0 Len: 88 Query Start:83 Query End:170 Subject Strand: NEGATIVE Subject Start: 11 Subject End: 99 ..................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcct-ttccccacgggattcctcactacgttcggaatgaca................................................................................................................................................................................................................................................. ..................................................................................acaattaacaattactttgtcattcagagcgtaagcgaagaatctctttcctcttcctcgcgagattcctcactgcgttcggaatgaca................................................................................................................................................................................................................................................. HSP 4 e-value: 2.0E-20 bit: 101.0 Len: 78 Query Start:98 Query End:175 Subject Strand: NEGATIVE Subject Start: 279 Subject End: 357 .................................................................................................tttgtcattcagagcgtaagcgaagaatctttttcct-ttccccacgggattcctcactacgttcggaatgacaaaggg............................................................................................................................................................................................................................................ .................................................................................................tttgtcattcagagcgtaagcgaagaatctctttcctcttcctcgcgagattcctcactgcgttcggaatgacaaaggg............................................................................................................................................................................................................................................ HSP 5 e-value: 6.0E-8 bit: 60.0 Len: 34 Query Start:55 Query End:88 Subject Strand: POSITIVE Subject Start: 122 Subject End: 155 ......................................................atacatgattcggcgtgtaccacgcataacaatt................................................................................................................................................................................................................................................................................................................................... ......................................................atacatgatttggcgtgtaccacgcataacaatt................................................................................................................................................................................................................................................................................................................................... HSP 6 e-value: 3.0E-7 bit: 58.0 Len: 41 Query Start:365 Query End:405 Subject Strand: NEGATIVE Subject Start: 86 Subject End: 126 ............................................................................................................................................................................................................................................................................................................................................................................tgtacccggcataaccattaacaattgacaattaaccatta...... ............................................................................................................................................................................................................................................................................................................................................................................tgtatccggcataaccattaaccattgacaattaacaatta...... Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 8.0E-29 bit: 129.0 Len: 163 Query Start:81 Query End:243 Subject Strand: POSITIVE Subject Start: 537 Subject End: 700 ................................................................................taacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttccttt-ccccacgggattcctcactacgttcggaatgacaaagggtggcgttcggaatgacaaacgcggttatttgcgttgattcgcg-tcatttgcgaaatttgcgttcggat........................................................................................................................................................................ ................................................................................taacaattgaccattaatttgtcattcagagcg-aagcgatgaatctcttccctttaccccgcgagattcctcacggtgttcggaatgacaagaggaggtgttcggaatgacaaagattgttatttgcgttgatttgcgcccatttgcgaaatttgcgttcggat........................................................................................................................................................................ HSP 2 e-value: 5.0E-21 bit: 103.0 Len: 92 Query Start:253 Query End:344 Subject Strand: POSITIVE Subject Start: 537 Subject End: 627 ............................................................................................................................................................................................................................................................taacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaa................................................................... ............................................................................................................................................................................................................................................................taacaattgaccattaatttgtcattcagagcg-aagcgatgaatctcttccctttaccccgcgagattcctcacggtgttcggaatgacaa................................................................... HSP 3 e-value: 7.0E-14 bit: 79.8 Len: 48 Query Start:255 Query End:302 Subject Strand: POSITIVE Subject Start: 162 Subject End: 208 ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctctt............................................................................................................. ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcg-aagcgaagaatctctt............................................................................................................. HSP 4 e-value: 4.0E-12 bit: 73.8 Len: 45 Query Start:83 Query End:127 Subject Strand: POSITIVE Subject Start: 162 Subject End: 205 ..................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatct............................................................................................................................................................................................................................................................................................ ..................................................................................acaattaaccattaatttgtcattcagagcg-aagcgaagaatct............................................................................................................................................................................................................................................................................................ HSP 5 e-value: 4.0E-6 bit: 54.0 Len: 27 Query Start:381 Query End:407 Subject Strand: POSITIVE Subject Start: 151 Subject End: 177 ............................................................................................................................................................................................................................................................................................................................................................................................attaacaattgacaattaaccattaat.... ............................................................................................................................................................................................................................................................................................................................................................................................attaacaattgacaattaaccattaat.... Subject: tfor_TF1588_TF1589|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[1702621,1703328]|708 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 97 Query Start:98 Query End:194 Subject Strand: POSITIVE Subject Start: 482 Subject End: 580 .................................................................................................tttgtcattcagagcgtaagcgaagaatctttttcc-tttccccacgggattcctcactacgttcggaatgacaaag-ggtggcgttcggaatgacaaa......................................................................................................................................................................................................................... .................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaa......................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-19 bit: 97.6 Len: 77 Query Start:270 Query End:346 Subject Strand: POSITIVE Subject Start: 482 Subject End: 558 .............................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaag................................................................. .............................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag................................................................. HSP 3 e-value: 4.0E-12 bit: 73.8 Len: 77 Query Start:99 Query End:175 Subject Strand: POSITIVE Subject Start: 199 Subject End: 274 ..................................................................................................ttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaaggg............................................................................................................................................................................................................................................ ..................................................................................................ttgtcattcagagcg-aagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaaggg............................................................................................................................................................................................................................................ HSP 4 e-value: 4.0E-6 bit: 54.0 Len: 31 Query Start:318 Query End:348 Subject Strand: POSITIVE Subject Start: 244 Subject End: 274 .............................................................................................................................................................................................................................................................................................................................gattcctcactacgttcggaatgacaaaggg............................................................... .............................................................................................................................................................................................................................................................................................................................gattcctcactgcgttcggaatgacaaaggg............................................................... Subject: tfor_TF1187_TF1188|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1269933,1270295]|363 HSP 1 e-value: 8.0E-26 bit: 119.0 Len: 91 Query Start:37 Query End:127 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 176 ....................................tcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacca-------ttaatttgtcattcagagcgtaagcgaagaatct............................................................................................................................................................................................................................................................................................ ....................................tcaatggttattttctaaatacatgattcggcgtgtacccggcataacaattaaccattaaccattaatttgtcattcagagcgtaagcgatgaatct............................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-15 bit: 83.8 Len: 50 Query Start:253 Query End:302 Subject Strand: NEGATIVE Subject Start: 76 Subject End: 125 ............................................................................................................................................................................................................................................................taacaattaaccattaatttgtcattcagagcgtaagcgaagaatctctt............................................................................................................. ............................................................................................................................................................................................................................................................taaccattaaccattaatttgtcattcagagcgtaagcgatgaatctctt............................................................................................................. Subject: tfor_TF0541_TF0542|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[571919,572057]|139 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 95 Query Start:254 Query End:348 Subject Strand: NEGATIVE Subject Start: 46 Subject End: 139 .............................................................................................................................................................................................................................................................aacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaaggg............................................................... .............................................................................................................................................................................................................................................................aacaattaaccattaatttgtcattcagggcg-aagcgaagaatctccttctttttcctcgcgagattcctcactacgttcggaatgacaaaggg............................................................... HSP 2 e-value: 2.0E-20 bit: 101.0 Len: 94 Query Start:82 Query End:175 Subject Strand: NEGATIVE Subject Start: 46 Subject End: 139 .................................................................................aacaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccc-cacgggattcctcactacgttcggaatgacaaaggg............................................................................................................................................................................................................................................ .................................................................................aacaattaaccattaatttgtcattcagggcg-aagcgaagaatctccttctttttcctcgcgagattcctcactacgttcggaatgacaaaggg............................................................................................................................................................................................................................................ Subject: tfor_TF1846_TF1847|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1997076,1997528]|453 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 62 Query Start:36 Query End:97 Subject Strand: NEGATIVE Subject Start: 92 Subject End: 153 ...................................gtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaa.......................................................................................................................................................................................................................................................................................................................... ...................................gtcaatggttattttctaaatacatgattcggcgtgtaccacgcataaccattaaccattaa.......................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-8 bit: 60.0 Len: 30 Query Start:255 Query End:284 Subject Strand: NEGATIVE Subject Start: 56 Subject End: 85 ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagc............................................................................................................................... ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagc............................................................................................................................... HSP 3 e-value: 6.0E-8 bit: 60.0 Len: 30 Query Start:83 Query End:112 Subject Strand: NEGATIVE Subject Start: 56 Subject End: 85 ..................................................................................acaattaaccattaatttgtcattcagagc........................................................................................................................................................................................................................................................................................................... ..................................................................................acaattaaccattaatttgtcattcagagc........................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 1.0E-6 bit: 56.0 Len: 32 Query Start:376 Query End:407 Subject Strand: NEGATIVE Subject Start: 70 Subject End: 101 .......................................................................................................................................................................................................................................................................................................................................................................................taaccattaacaattgacaattaaccattaat.... .......................................................................................................................................................................................................................................................................................................................................................................................taaccattaaccattgacaattaaccattaat.... Subject: tfor_TF1590_TF1591|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[1706104,1706526]|423 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 96 Query Start:99 Query End:194 Subject Strand: POSITIVE Subject Start: 249 Subject End: 346 ..................................................................................................ttgtcattcagagcgtaagcgaagaatctttttcc-tttccccacgggattcctcactacgttcggaatgacaaag-ggtggcgttcggaatgacaaa......................................................................................................................................................................................................................... ..................................................................................................ttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaa......................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-18 bit: 95.6 Len: 76 Query Start:271 Query End:346 Subject Strand: POSITIVE Subject Start: 249 Subject End: 324 ..............................................................................................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaag................................................................. ..............................................................................................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag................................................................. Subject: tfor_TF0603_TF0604|glycosyltransferase:hypothetical protein|POSITIVE:POSITIVE|[634899,635524]|626 HSP 1 e-value: 5.0E-24 bit: 113.0 Len: 108 Query Start:68 Query End:175 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 248 ...................................................................cgtgtaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatct-ttttcctttccccacgggattcctcactacgttcggaatgacaaaggg............................................................................................................................................................................................................................................ ...................................................................cgtgtaccatgcataacaattaacaattaatttgtcattcagagcg-aagcgaagaatctcttttcttccccccgcgggattcctcacggtgttcggaatgacaaaggg............................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-18 bit: 95.6 Len: 104 Query Start:245 Query End:348 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 243 ....................................................................................................................................................................................................................................................accacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaaggg............................................................... ....................................................................................................................................................................................................................................................accatgcataacaattaacaattaatttgtcattcagagcg-aagcgaagaatctcttttcttccccccgcgggattcctcacggtgttcggaatgacaaaggg............................................................... Subject: tfor_TF1848_TF1850|conserved hypothetical protein:Na+/H+-exchanging protein|POSITIVE:POSITIVE|[1998005,1998681]|677 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 88 Query Start:258 Query End:345 Subject Strand: NEGATIVE Subject Start: 455 Subject End: 542 .................................................................................................................................................................................................................................................................attaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaa.................................................................. .................................................................................................................................................................................................................................................................attaaccattaatttgtcattcagagcgtcagcgaagaatctcttccctttcccctgcgagattcctcacggtgttcggaatgacaaa.................................................................. HSP 2 e-value: 1.0E-18 bit: 95.6 Len: 87 Query Start:86 Query End:172 Subject Strand: NEGATIVE Subject Start: 455 Subject End: 542 .....................................................................................attaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttcccc-acgggattcctcactacgttcggaatgacaaa............................................................................................................................................................................................................................................... .....................................................................................attaaccattaatttgtcattcagagcgtcagcgaagaatctcttccctttcccctgcgagattcctcacggtgttcggaatgacaaa............................................................................................................................................................................................................................................... HSP 3 e-value: 4.0E-15 bit: 83.8 Len: 50 Query Start:351 Query End:400 Subject Strand: NEGATIVE Subject Start: 183 Subject End: 232 ..............................................................................................................................................................................................................................................................................................................................................................gcgttcggattccgtgtacccggcataaccattaacaattgacaattaac........... ..............................................................................................................................................................................................................................................................................................................................................................gcgttcggattccgtgtacccggcataacaattaaccattgacaattaac........... HSP 4 e-value: 2.0E-14 bit: 81.8 Len: 53 Query Start:355 Query End:407 Subject Strand: NEGATIVE Subject Start: 530 Subject End: 582 ..................................................................................................................................................................................................................................................................................................................................................................tcggattccgtgtacccggcataaccattaacaattgacaattaaccattaat.... ..................................................................................................................................................................................................................................................................................................................................................................tcggattccgtgtacccggcataacaattaaccattgaccattaaccattaat.... HSP 5 e-value: 3.0E-10 bit: 67.9 Len: 65 Query Start:180 Query End:244 Subject Strand: NEGATIVE Subject Start: 404 Subject End: 469 ...................................................................................................................................................................................gttcggaatgacaaacgcggttatttgcgttgattcgcg-tcatttgcgaaatttgcgttcggata....................................................................................................................................................................... ...................................................................................................................................................................................gttcggaatgacaaacacagttatttgcgttgatttgcgcccatttacgaaattcgcgttcggata....................................................................................................................................................................... Subject: tfor_TF1838_TF1839|tRNA/rRNA methyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1988806,1989486]|681 HSP 1 e-value: 8.0E-23 bit: 109.0 Len: 71 Query Start:25 Query End:95 Subject Strand: NEGATIVE Subject Start: 198 Subject End: 268 ........................cgaaatgaatggtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccatt............................................................................................................................................................................................................................................................................................................................ ........................cgaaataaattgtcaatggttattttctaaatacatgattcggcgtgtacccggcataacaattaaccatt............................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-21 bit: 105.0 Len: 92 Query Start:83 Query End:174 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 196 ..................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttccttt-ccccacgggattcctcactacgttcggaatgacaaagg............................................................................................................................................................................................................................................. ..................................................................................acaattaacaattaatttgtcattcagagcgtaagcgaagaatctctttcttttactccgcgggattcctcacggtgttcggaatgacaaagg............................................................................................................................................................................................................................................. HSP 3 e-value: 3.0E-19 bit: 97.6 Len: 93 Query Start:255 Query End:347 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 196 ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaagg................................................................ ..............................................................................................................................................................................................................................................................acaattaacaattaatttgtcattcagagcgtaagcgaagaatctctttcttttactccgcgggattcctcacggtgttcggaatgacaaagg................................................................ HSP 4 e-value: 1.0E-9 bit: 65.9 Len: 45 Query Start:363 Query End:407 Subject Strand: NEGATIVE Subject Start: 181 Subject End: 225 ..........................................................................................................................................................................................................................................................................................................................................................................cgtgtacccggcataaccattaacaattgacaattaaccattaat.... ..........................................................................................................................................................................................................................................................................................................................................................................cgtgtacccggcataacaattaaccattgacaattaacaattaat.... HSP 5 e-value: 4.0E-9 bit: 63.9 Len: 36 Query Start:212 Query End:247 Subject Strand: NEGATIVE Subject Start: 63 Subject End: 98 ...................................................................................................................................................................................................................attcgcgtcatttgcgaaatttgcgttcggataacc.................................................................................................................................................................... ...................................................................................................................................................................................................................attcgcgccatttgcgaaatttgcgttcggataacc.................................................................................................................................................................... Subject: tfor_TF1483_TF1484|glycosyltransferase family protein:penicillin binding protein|POSITIVE:POSITIVE|[1578886,1579698]|813 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 91 Query Start:83 Query End:173 Subject Strand: NEGATIVE Subject Start: 223 Subject End: 314 ..................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccc--cacgggattcctcactacgttcggaatgacaaag.............................................................................................................................................................................................................................................. ..................................................................................acaattaaccattaatttgtcattcagagcg-aagcgaagaatctcttccctttaccggggcgggattcctcactacgttcggaatgacaaag.............................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-21 bit: 105.0 Len: 92 Query Start:255 Query End:346 Subject Strand: NEGATIVE Subject Start: 223 Subject End: 314 ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttcc-ccgtgagattcctcactacgttcggaatgacaaag................................................................. ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcg-aagcgaagaatctcttccctttaccggggcgggattcctcactacgttcggaatgacaaag................................................................. HSP 3 e-value: 2.0E-14 bit: 81.8 Len: 53 Query Start:355 Query End:407 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 53 ..................................................................................................................................................................................................................................................................................................................................................................tcggattccgtgtacccggcataaccattaacaattgacaattaaccattaat.... ..................................................................................................................................................................................................................................................................................................................................................................tcggataccatgtacccggcataacaattaacaattgacaattaaccattaat.... HSP 4 e-value: 2.0E-14 bit: 81.8 Len: 53 Query Start:355 Query End:407 Subject Strand: NEGATIVE Subject Start: 299 Subject End: 351 ..................................................................................................................................................................................................................................................................................................................................................................tcggattccgtgtacccggcataaccattaacaattgacaattaaccattaat.... ..................................................................................................................................................................................................................................................................................................................................................................tcggataccatgtacccggcataacaattaacaattgacaattaaccattaat.... Subject: tfor_TF2816_TF2817|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3007245,3007497]|253 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 84 Query Start:180 Query End:263 Subject Strand: NEGATIVE Subject Start: 38 Subject End: 121 ...................................................................................................................................................................................gttcggaatgacaaacgcggttatttgcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaac.................................................................................................................................................... ...................................................................................................................................................................................gttcggaatgacaaagggggttatttgctttcattcgcgttatttgcgttatttgcgttcggataaccctgcataacaattaac.................................................................................................................................................... HSP 2 e-value: 5.0E-18 bit: 93.7 Len: 55 Query Start:41 Query End:95 Subject Strand: NEGATIVE Subject Start: 199 Subject End: 253 ........................................tggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccatt............................................................................................................................................................................................................................................................................................................................ ........................................tggttattttctaaatacatgattcggcgtgtaccacgcataataattgaccatt............................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 3.0E-16 bit: 87.7 Len: 93 Query Start:83 Query End:175 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 197 ..................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatct--ttttcctttccccacgggattcctcactacgttcggaatgacaaaggg............................................................................................................................................................................................................................................ ..................................................................................acaattaacaattaatttgtcattcagagca-aagcgaagaatctcctttccttttcctcgcgggattcctcactgtgttcggaatgacaaaggg............................................................................................................................................................................................................................................ HSP 4 e-value: 1.0E-15 bit: 85.7 Len: 94 Query Start:255 Query End:348 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 197 ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatct-cttccctcttccccgtgagattcctcactacgttcggaatgacaaaggg............................................................... ..............................................................................................................................................................................................................................................................acaattaacaattaatttgtcattcagagc-aaagcgaagaatctcctttccttttcctcgcgggattcctcactgtgttcggaatgacaaaggg............................................................... Subject: tfor_TF2500_TF2501|ABC transporter, ATP-binding protein:DNA mismatch repair protein|POSITIVE:POSITIVE|[2675363,2676419]|1057 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 64 Query Start:206 Query End:269 Subject Strand: NEGATIVE Subject Start: 318 Subject End: 381 .............................................................................................................................................................................................................gcgttgattcgcgtcatttgcgaaatttgcgttcggataaccacgcataacaattaaccattaa.............................................................................................................................................. .............................................................................................................................................................................................................gcgttgatttgcgccatttgcgaaatttgcgttcggataaccacgcataacaattgacaattaa.............................................................................................................................................. HSP 2 e-value: 7.0E-17 bit: 89.7 Len: 57 Query Start:351 Query End:407 Subject Strand: NEGATIVE Subject Start: 750 Subject End: 806 ..............................................................................................................................................................................................................................................................................................................................................................gcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaat.... ..............................................................................................................................................................................................................................................................................................................................................................gcgttcggataccgtgtacccggcataacaattgacaattgacaattaaccattaat.... HSP 3 e-value: 4.0E-15 bit: 83.8 Len: 46 Query Start:255 Query End:300 Subject Strand: NEGATIVE Subject Start: 720 Subject End: 765 ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctc............................................................................................................... ..............................................................................................................................................................................................................................................................acaattaaccattaatatgtcattcagagcgtaagcgaagaatctc............................................................................................................... HSP 4 e-value: 2.0E-14 bit: 81.8 Len: 45 Query Start:83 Query End:127 Subject Strand: NEGATIVE Subject Start: 721 Subject End: 765 ..................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatct............................................................................................................................................................................................................................................................................................ ..................................................................................acaattaaccattaatatgtcattcagagcgtaagcgaagaatct............................................................................................................................................................................................................................................................................................ Subject: tfor_TF1592_TF1593|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1708618,1708998]|381 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 74 Query Start:100 Query End:173 Subject Strand: POSITIVE Subject Start: 224 Subject End: 297 ...................................................................................................tgtcattcagagcgtaagcgaagaatctttttcctt-tccccacgggattcctcactacgttcggaatgacaaag.............................................................................................................................................................................................................................................. ...................................................................................................tgtcattcagagcg-aagcgaagaatctttttccttctcctcacgagattcctcactgcgttcggaatgacaaag.............................................................................................................................................................................................................................................. HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 75 Query Start:272 Query End:346 Subject Strand: POSITIVE Subject Start: 224 Subject End: 297 ...............................................................................................................................................................................................................................................................................tgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaag................................................................. ...............................................................................................................................................................................................................................................................................tgtcattcagagcg-aagcgaagaatctttttccttctcctcacgagattcctcactgcgttcggaatgacaaag................................................................. Subject: tfor_TF2817_TF2818|hypothetical protein:acetylornithine aminotransferase|POSITIVE:POSITIVE|[3007687,3007878]|192 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 57 Query Start:351 Query End:407 Subject Strand: NEGATIVE Subject Start: 39 Subject End: 95 ..............................................................................................................................................................................................................................................................................................................................................................gcgttcggattccgtgtacccggcataaccattaacaattgacaattaaccattaat.... ..............................................................................................................................................................................................................................................................................................................................................................gcgttcggataccgtgtacccggcataacaattaaccattgacaattaaccattaat.... HSP 2 e-value: 7.0E-14 bit: 79.8 Len: 48 Query Start:255 Query End:302 Subject Strand: NEGATIVE Subject Start: 8 Subject End: 54 ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctctt............................................................................................................. ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcg-aagcgaagaatctctt............................................................................................................. HSP 3 e-value: 3.0E-13 bit: 77.8 Len: 51 Query Start:83 Query End:133 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 54 ..................................................................................acaattaaccattaatttgtcattcagagcgtaagcgaagaatctttttcc...................................................................................................................................................................................................................................................................................... ..................................................................................acaattaaccattaatttgtcattcagagcg-aagcgaagaatctctttcc...................................................................................................................................................................................................................................................................................... Subject: tfor_TF2996_TF2997|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3211182,3211547]|366 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 38 Query Start:58 Query End:95 Subject Strand: POSITIVE Subject Start: 218 Subject End: 255 .........................................................catgattcggcgtgtaccacgcataacaattaaccatt............................................................................................................................................................................................................................................................................................................................ .........................................................catgattcggcgtgtaccacgcataacaattaaccatt............................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 6.0E-8 bit: 60.0 Len: 30 Query Start:218 Query End:247 Subject Strand: POSITIVE Subject Start: 40 Subject End: 69 .........................................................................................................................................................................................................................gtcatttgcgaaatttgcgttcggataacc.................................................................................................................................................................... .........................................................................................................................................................................................................................gtcatttgcgaaatttgcgttcggataacc.................................................................................................................................................................... HSP 3 e-value: 3.0E-7 bit: 58.0 Len: 29 Query Start:56 Query End:84 Subject Strand: POSITIVE Subject Start: 159 Subject End: 187 .......................................................tacatgattcggcgtgtaccacgcataac....................................................................................................................................................................................................................................................................................................................................... .......................................................tacatgattcggcgtgtaccacgcataac....................................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 3.0E-7 bit: 58.0 Len: 45 Query Start:363 Query End:407 Subject Strand: POSITIVE Subject Start: 171 Subject End: 215 ..........................................................................................................................................................................................................................................................................................................................................................................cgtgtacccggcataaccattaacaattgacaattaaccattaat.... ..........................................................................................................................................................................................................................................................................................................................................................................cgtgtaccacgcataaccattgacaattgacaattaacaattaat.... Subject: tfor_TF1659_TF1660|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1775270,1775408]|139 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 65 Query Start:238 Query End:302 Subject Strand: NEGATIVE Subject Start: 76 Subject End: 139 .............................................................................................................................................................................................................................................tcggataaccacgcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatctctt............................................................................................................. .............................................................................................................................................................................................................................................tcggataacccggcataaccattaaccattaatttatcattcagagcg-aagcgatgaatctctt............................................................................................................. HSP 2 e-value: 6.0E-8 bit: 60.0 Len: 50 Query Start:78 Query End:127 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 127 .............................................................................gcataacaattaaccattaatttgtcattcagagcgtaagcgaagaatct............................................................................................................................................................................................................................................................................................ .............................................................................gcataaccattaaccattaatttatcattcagagcg-aagcgatgaatct............................................................................................................................................................................................................................................................................................ Subject: tfor_TF2744_TF2745|methionyl-tRNA formyltransferase:hypothetical protein|POSITIVE:POSITIVE|[2927439,2927701]|263 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 99 Query Start:259 Query End:357 Subject Strand: NEGATIVE Subject Start: 166 Subject End: 263 ..................................................................................................................................................................................................................................................................ttaaccattaatttgtcattcagagcgtaagcgaagaatctcttccctcttcc-ccgtgagattcctcactacgttcggaatgacaaagggcggcgttcg...................................................... ..................................................................................................................................................................................................................................................................ttaaccattaatttgtcattcagagcg-aagcgatgaatctctctccttttccggggcgagattcctcacggtgttcggaatgacaaa-ggcggcgttcg...................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 88 Query Start:87 Query End:174 Subject Strand: NEGATIVE Subject Start: 175 Subject End: 263 ......................................................................................ttaaccattaatttgtcattcagagcgtaagcgaagaatctttttcctttccc--cacgggattcctcactacgttcggaatgacaaagg............................................................................................................................................................................................................................................. ......................................................................................ttaaccattaatttgtcattcagagcg-aagcgatgaatctctctccttttccggggcgagattcctcacggtgttcggaatgacaaagg............................................................................................................................................................................................................................................. Subject: tfor_TF2652_TF2653|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2822183,2822232]|50 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 44 Query Start:259 Query End:302 Subject Strand: POSITIVE Subject Start: 1 Subject End: 43 ..................................................................................................................................................................................................................................................................ttaaccattaatttgtcattcagagcgtaagcgaagaatctctt............................................................................................................. ..................................................................................................................................................................................................................................................................ttaaccattaatttgtcattcagagcg-aagcgaagaatctctt............................................................................................................. HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 47 Query Start:87 Query End:133 Subject Strand: POSITIVE Subject Start: 1 Subject End: 46 ......................................................................................ttaaccattaatttgtcattcagagcgtaagcgaagaatctttttcc...................................................................................................................................................................................................................................................................................... ......................................................................................ttaaccattaatttgtcattcagagcg-aagcgaagaatctctttcc...................................................................................................................................................................................................................................................................................... Subject: tfor_TF2640_TF2641|hypothetical protein:riboflavin kinase/FAD synthase|POSITIVE:POSITIVE|[2809594,2809820]|227 HSP 1 e-value: 1.0E-9 bit: 65.9 Len: 33 Query Start:316 Query End:348 Subject Strand: POSITIVE Subject Start: 42 Subject End: 74 ...........................................................................................................................................................................................................................................................................................................................gagattcctcactacgttcggaatgacaaaggg............................................................... ...........................................................................................................................................................................................................................................................................................................................gagattcctcactacgttcggaatgacaaaggg............................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 31 Query Start:145 Query End:175 Subject Strand: POSITIVE Subject Start: 44 Subject End: 74 ................................................................................................................................................gattcctcactacgttcggaatgacaaaggg............................................................................................................................................................................................................................................ ................................................................................................................................................gattcctcactacgttcggaatgacaaaggg............................................................................................................................................................................................................................................ Subject: tfor_TF0684_TF0685|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[730625,730991]|367 HSP 1 e-value: 2.0E-8 bit: 61.9 Len: 31 Query Start:83 Query End:113 Subject Strand: POSITIVE Subject Start: 332 Subject End: 362 ..................................................................................acaattaaccattaatttgtcattcagagcg.......................................................................................................................................................................................................................................................................................................... ..................................................................................acaattaaccattaatttgtcattcagagcg.......................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 31 Query Start:255 Query End:285 Subject Strand: POSITIVE Subject Start: 332 Subject End: 362 ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcg.............................................................................................................................. ..............................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcg.............................................................................................................................. Subject: tfor_TF0538_TF0540|hypothetical protein:conserved hypothetical protein; possible surface protein|POSITIVE:POSITIVE|[567196,567425]|230 HSP 1 e-value: 2.0E-8 bit: 61.9 Len: 31 Query Start:270 Query End:300 Subject Strand: NEGATIVE Subject Start: 62 Subject End: 92 .............................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctc............................................................................................................... .............................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctc............................................................................................................... HSP 2 e-value: 6.0E-8 bit: 60.0 Len: 30 Query Start:98 Query End:127 Subject Strand: NEGATIVE Subject Start: 63 Subject End: 92 .................................................................................................tttgtcattcagagcgtaagcgaagaatct............................................................................................................................................................................................................................................................................................ .................................................................................................tttgtcattcagagcgtaagcgaagaatct............................................................................................................................................................................................................................................................................................ Subject: tfor_TF3105_TF3106|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3338403,3338494]|92 HSP 1 e-value: 6.0E-8 bit: 60.0 Len: 38 Query Start:265 Query End:302 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 86 ........................................................................................................................................................................................................................................................................attaatttgtcattcagagcgtaagcgaagaatctctt............................................................................................................. ........................................................................................................................................................................................................................................................................attaatttgtcattcagagcg-aagcgaagaatctctt............................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:93 Query End:127 Subject Strand: NEGATIVE Subject Start: 53 Subject End: 86 ............................................................................................attaatttgtcattcagagcgtaagcgaagaatct............................................................................................................................................................................................................................................................................................ ............................................................................................attaatttgtcattcagagcg-aagcgaagaatct............................................................................................................................................................................................................................................................................................ Subject: tfor_TF2745_TF2746|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2928008,2928135]|128 HSP 1 e-value: 3.0E-7 bit: 58.0 Len: 37 Query Start:266 Query End:302 Subject Strand: NEGATIVE Subject Start: 93 Subject End: 128 .........................................................................................................................................................................................................................................................................ttaatttgtcattcagagcgtaagcgaagaatctctt............................................................................................................. .........................................................................................................................................................................................................................................................................ttaatttgtcattcagagcg-aagcgaagaatctctt............................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 39 Query Start:94 Query End:132 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 128 .............................................................................................ttaatttgtcattcagagcgtaagcgaagaatctttttc....................................................................................................................................................................................................................................................................................... .............................................................................................ttaatttgtcattcagagcg-aagcgaagaatctctttc....................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGCCCGAGGCCCAUGGACGAACGCCGAAAUGAAUGGUCAAUGGUUAUUUUCUAAAUACAUGAUUCGGCGUGUACCACGCAUAACAAUUAACCAUUAAUUUGUCAUUCAGAGCGUAAGCGAAGAAUCUUUUUCCUUUCCCCACGGGAUUCCUCACUACGUUCGGAAUGACAAAGGGUGGCGUUCGGAAUGACAAACGCGGUUAUUUGCGUUGAUUCGCGUCAUUUGCGAAAUUUGCGUUCGGAUAACCACGCAUAACAAUUAACCAUUAAUUUGUCAUUCAGAGCGUAAGCGAAGAAUCUCUUCCCUCUUCCCCGUGAGAUUCCUCACUACGUUCGGAAUGACAAAGGGCGGCGUUCGGAUUCCGUGUACCCGGCAUAACCAUUAACAAUUGACAAUUAACCAUUAAUGUUA .(((.(.((..(((((((((((((((.....((((((.((((((((...((.........))....(((((...)))))........))))))))..((((((((((.(((((((.(.((.(((((((..............))))))).)).)))))))).))))))))))(.((((...((.(((((...(((((((....)))))))..((((((.....)))))).....))))).))...)))).)..........))))))..((((((((((.(((((((.(.((.(((((((...............))))))).)).)))))))).))))))))))...)))))))))...))))))..)))))).....((((((...((((...))))...))))))... (-141.70) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACAUUAAUGGUUAAUUGUCAAUUGUUAAUGGUUAUGCCGGGUACACGGAAUCCGAACGCCGCCCUUUGUCAUUCCGAACGUAGUGAGGAAUCUCACGGGGAAGAGGGAAGAGAUUCUUCGCUUACGCUCUGAAUGACAAAUUAAUGGUUAAUUGUUAUGCGUGGUUAUCCGAACGCAAAUUUCGCAAAUGACGCGAAUCAACGCAAAUAACCGCGUUUGUCAUUCCGAACGCCACCCUUUGUCAUUCCGAACGUAGUGAGGAAUCCCGUGGGGAAAGGAAAAAGAUUCUUCGCUUACGCUCUGAAUGACAAAUUAAUGGUUAAUUGUUAUGCGUGGUACACGCCGAAUCAUGUAUUUAGAAAAUAACCAUUGACCAUUCAUUUCGGCGUUCGUCCAUGGGCCUCGGGCG ...((((((..(((.......)))..)))))).....((((((..((.(((...(((((((((...((((((((((.((.((((((((((((((((...............)))))))))))).)))).)).))))))))))..((((((((((.(((((((((((((......(((((...(((((.......))))).....((((.((((((((((((......))))))).....((((((((((.((.((((((((((((((((.........)).....)))))))))).)))).)).)))))))))).....))))).))))..)))))(((....))).)))))))).........))))).)))))))))).....)))))))))))).))..)))..))). (-151.36) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1005 50 1 101 52 tfor:TF2817|5end_hypothetical_protein_3007358..3007588_POSITIVE 949 379 331 94 46 tfor:TF0542|5end_hypothetical_protein_571918..572148_POSITIVE 874 240 191 89 39 tfor:TF1184|5end_hypothetical_protein_1269004..1269234_POSITIVE 853 370 321 86 37 tfor:TF1846|5end_hypothetical_protein_1996726..1996956_POSITIVE 841 240 191 224 175 tfor:TF1841|5end_hypothetical_protein_1991936..1992166_POSITIVE 817 320 271 168 119 tfor:TF1842|5end_hypothetical_protein_1992571..1992801_POSITIVE 793 240 191 123 73 tfor:TF1187|5end_hypothetical_protein_1269625..1269855_POSITIVE 793 240 191 66 16 tfor:TF1186|5end_hypothetical_protein_1269568..1269798_POSITIVE 784 190 142 62 16 tfor:TF1844|5end_hypothetical_protein_1996389..1996619_POSITIVE 749 240 191 123 73 tfor:TF3105|5end_hypothetical_protein_3338068..3338298_POSITIVE 732 400 353 102 55 tfor:TF1183|5end_hypothetical_protein_1268391..1268621_POSITIVE 725 150 101 149 100 tfor:TF2777|5end_hypothetical_protein_2961595..2961825_POSITIVE 721 120 71 117 69 tfor:TF2746|5end_hypothetical_protein_2927996..2928226_POSITIVE 720 230 181 84 35 tfor:TF1660|5end_hypothetical_protein_1775269..1775499_POSITIVE 707 357 312 189 142 tfor:TF2745|5end_hypothetical_protein_2927562..2927792_POSITIVE 694 399 351 231 183 tfor:TF1850|5end_Na+/H+-exchanging_protein_1998542..1998772_POSITIVE 689 130 83 66 20 tfor:TF2816|5end_hypothetical_protein_3006925..3007155_POSITIVE 681 360 314 196 155 tfor:TF1182|5end_hypothetical_protein_1268565..1268795_POSITIVE 644 130 82 48 1 tfor:TF1185|5end_hypothetical_protein_1269238..1269468_POSITIVE 641 399 351 206 158 tfor:TF3107|5end_hypothetical_protein_3338459..3338689_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 845 348 302 78 28 tfor:TF0369|3end_hypothetical_protein_386186..386336_POSITIVE 822 240 196 128 84 tfor:TF1841|3end_hypothetical_protein_1992267..1992417_POSITIVE 809 359 311 59 7 tfor:TF0541|3end_conserved_hypothetical_protein_571858..572008_POSITIVE 796 240 191 55 6 tfor:TF2823|3end_TPR-containing_protein_3014337..3014487_POSITIVE 741 306 261 125 81 tfor:TF1483|3end_glycosyltransferase_family_protein_1578825..1578975_POSITIVE 689 130 83 83 37 tfor:TF2817|3end_hypothetical_protein_3007626..3007776_POSITIVE 632 260 212 50 2 tfor:TF2816|3end_hypothetical_protein_3007184..3007334_POSITIVE 632 27 1 143 117 tfor:TF1186|3end_hypothetical_protein_1269815..1269965_POSITIVE 622 80 32 131 83 tfor:TF0820|3end_hypothetical_protein_879942..880092_POSITIVE 592 304 261 45 1 tfor:TF1184|3end_hypothetical_protein_1269311..1269461_POSITIVE 592 304 261 45 1 tfor:TF1183|3end_hypothetical_protein_1268728..1268878_POSITIVE 583 149 101 54 2 tfor:TF0538|3end_hypothetical_protein_567135..567285_POSITIVE 574 140 93 64 5 tfor:TF1844|3end_hypothetical_protein_1996693..1996843_POSITIVE 545 302 265 41 5 tfor:TF3105|3end_hypothetical_protein_3338342..3338492_POSITIVE 508 311 271 151 113 tfor:TF0821|3end_hypothetical_protein_880195..880345_POSITIVE 476 39 2 146 115 tfor:TF3087|3end_conserved_hypothetical_protein_3322582..3322732_POSITIVE 449 92 56 147 112 tfor:TF2840|3end_hypothetical_protein_3031289..3031439_POSITIVE 449 302 269 122 90 tfor:TF0828|3end_hypothetical_protein_887508..887658_POSITIVE 447 247 220 28 1 tfor:TF1838|3end_tRNA/rRNA_methyltransferase_1988745..1988895_POSITIVE 420 359 312 120 62 tfor:TF1002|3end_replicative_DNA_helicase_1058232..1058382_POSITIVE