Origin IGS: taagcgctttagaagaagtcgtatgtatggcggggactatcacattccgggaacgtctacgcacgaacatcccgtgatattatatagttatcgcatttatcgatacgggggacaaatctttacgcagattgattgcaaaccttgatgcgggagacgaatcaagttcgcagggcttgattttttttattgcaccggcataaaaaatgaagttttttatgtaagttttgcaagaaaagataacttgcttagaataaattaattggtcggactgcttgaaaatagggtaacgagatagcaatcgttcgtatctctgagttcttcatcgttatgcttcaatgtgataactcttgatgctacaaaggtagtaaattccttcaattgactgtagtaagttattaaaaaagagagtgcaattttgaactctcaaaaacttttccccaattctatggcttcaaccaagcactttgaggctttactatcaaacgagcattgttatatgccatttttagtgtgagacaggtacgagcagtatatgtatcatcactaattttgtgaattgccaatgctaaatcaggattaggtgaaccaggagtcaaattaagtggcagcagaagttgaatacggttgttatagaattgtggtacggctaacttgtagttagtttttactctttttttaacctcttcaatagctccatctaatctacgacgaatttcgcctggatccaattaatgattgtggatagacccacacgtctttatgtgtaaatatttacgccgcaaaggtaacgccttttttaattcaatccaaatatttcttcttcttttttttgatatatgactcttttttcttgttcacagtctttttatttgagttttatcccataaaatttccattcactattaaccgattctattaaatctatggatgttgctgtatccgatataaggggaaaatataaagtgaatgtgatatcttgccctgcatattgactttattactaccgaaaagagaaccgacactctcggcgatctaagttatttagcgttatttctcccatttgtcgaggttattcaagagattttatgtaagtttgccacaaaaaacaaaagaataat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 attattcttttgttttttgtggcaaacttacataaaatctcttgaataacctcgacaaatgggagaaataacgctaaataacttagatcgccgagagtgtcggttctcttttcggtagtaataaagtcaatatgcagggcaagatatcacattcactttatattttccccttatatcggatacagcaacatccatagatttaatagaatcggttaatagtgaatggaaattttatgggataaaactcaaataaaaagactgtgaacaagaaaaaagagtcatatatcaaaaaaaagaagaagaaatatttggattgaattaaaaaaggcgttacctttgcggcgtaaatatttacacataaagacgtgtgggtctatccacaatcattaattggatccaggcgaaattcgtcgtagattagatggagctattgaagaggttaaaaaaagagtaaaaactaactacaagttagccgtaccacaattctataacaaccgtattcaacttctgctgccacttaatttgactcctggttcacctaatcctgatttagcattggcaattcacaaaattagtgatgatacatatactgctcgtacctgtctcacactaaaaatggcatataacaatgctcgtttgatagtaaagcctcaaagtgcttggttgaagccatagaattggggaaaagtttttgagagttcaaaattgcactctcttttttaataacttactacagtcaattgaaggaatttactacctttgtagcatcaagagttatcacattgaagcataacgatgaagaactcagagatacgaacgattgctatctcgttaccctattttcaagcagtccgaccaattaatttattctaagcaagttatcttttcttgcaaaacttacataaaaaacttcattttttatgccggtgcaataaaaaaaatcaagccctgcgaacttgattcgtctcccgcatcaaggtttgcaatcaatctgcgtaaagatttgtcccccgtatcgataaatgcgataactatataatatcacgggatgttcgtgcgtagacgttcccggaatgtgatagtccccgccatacatacgacttcttctaaagcgctta Mask Tandem Repeat Region ================================================ taagcgctttagaagaagtcgtatgtatggcggggactatcacattccgggaacgtctacgcacgaacatcccgtgatattatatagttatcgcatttatcgatacgggggacaaatctttacgcagattgattgcaaaccttgatgcgggagacgaatcaagttcgcagggcttgattttttttattgcaccggcataaaaaatgaagttttttatgtaagttttgcaagaaaagataacttgcttagaataaattaattggtcggactgcttgaaaatagggtaacgagatagcaatcgttcgtatctctgagttcttcatcgttatgcttcaatgtgataactcttgatgctacaaaggtagtaaattccttcaattgactgtagtaagttattaaaaaagagagtgcaattttgaactctcaaaaacttttccccaattctatggcttcaaccaagcactttgaggctttactatcaaacgagcattgttatatgccatttttagtgtgagacaggtacgagcagtatatgtatcatcactaattttgtgaattgccaatgctaaatcaggattaggtgaaccaggagtcaaattaagtggcagcagaagttgaatacggttgttatagaattgtggtacggctaacttgtagttagtttttactctttttttaacctcttcaatagctccatctaatctacgacgaatttcgcctggatccaattaatgattgtggatagacccacacgtctttatgtgtaaatatttacgccgcaaaggtaacgccttttttaattcaatccaaatatttcttcttcttttttttgatatatgactcttttttcttgttcacagtctttttatttgagttttatcccataaaatttccattcactattaaccgattctattaaatctatggatgttgctgtatccgatataaggggaaaatataaagtgaatgtgatatcttgccctgcatattgactttattactaccgaaaagagaaccgacactctcggcgatctaagttatttagcgttatttctcccatttgtcgaggttattcaagagattttatgtaagtttgccacaaaaaacaaaagaataat Find is-nt database================================================ Query_seq: TF2881:TF2882|TF2881:TF2882:conserved hypothetical protein:conserved hypothetical protein:->->:3072441..3073558 1118 taagcgctttagaagaagtcgtatgtatggcggggactatcacattccgggaacgtctacgcacgaacatcccgtgatattatatagttatcgcatttatcgatacgggggacaaatctttacgcagattgattgcaaaccttgatgcgggagacgaatcaagttcgcagggcttgattttttttattgcaccggcataaaaaatgaagttttttatgtaagttttgcaagaaaagataacttgcttagaataaattaattggtcggactgcttgaaaatagggtaacgagatagcaatcgttcgtatctctgagttcttcatcgttatgcttcaatgtgataactcttgatgctacaaaggtagtaaattccttcaattgactgtagtaagttattaaaaaagagagtgcaattttgaactctcaaaaacttttccccaattctatggcttcaaccaagcactttgaggctttactatcaaacgagcattgttatatgccatttttagtgtgagacaggtacgagcagtatatgtatcatcactaattttgtgaattgccaatgctaaatcaggattaggtgaaccaggagtcaaattaagtggcagcagaagttgaatacggttgttatagaattgtggtacggctaacttgtagttagtttttactctttttttaacctcttcaatagctccatctaatctacgacgaatttcgcctggatccaattaatgattgtggatagacccacacgtctttatgtgtaaatatttacgccgcaaaggtaacgccttttttaattcaatccaaatatttcttcttcttttttttgatatatgactcttttttcttgttcacagtctttttatttgagttttatcccataaaatttccattcactattaaccgattctattaaatctatggatgttgctgtatccgatataaggggaaaatataaagtgaatgtgatatcttgccctgcatattgactttattactaccgaaaagagaaccgacactctcggcgatctaagttatttagcgttatttctcccatttgtcgaggttattcaagagattttatgtaagtttgccacaaaaaacaaaagaataat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF2881:TF2882|TF2881:TF2882:conserved hypothetical protein:conserved hypothetical protein:->->:3072441..3073558 1118 taagcgctttagaagaagtcgtatgtatggcggggactatcacattccgggaacgtctacgcacgaacatcccgtgatattatatagttatcgcatttatcgatacgggggacaaatctttacgcagattgattgcaaaccttgatgcgggagacgaatcaagttcgcagggcttgattttttttattgcaccggcataaaaaatgaagttttttatgtaagttttgcaagaaaagataacttgcttagaataaattaattggtcggactgcttgaaaatagggtaacgagatagcaatcgttcgtatctctgagttcttcatcgttatgcttcaatgtgataactcttgatgctacaaaggtagtaaattccttcaattgactgtagtaagttattaaaaaagagagtgcaattttgaactctcaaaaacttttccccaattctatggcttcaaccaagcactttgaggctttactatcaaacgagcattgttatatgccatttttagtgtgagacaggtacgagcagtatatgtatcatcactaattttgtgaattgccaatgctaaatcaggattaggtgaaccaggagtcaaattaagtggcagcagaagttgaatacggttgttatagaattgtggtacggctaacttgtagttagtttttactctttttttaacctcttcaatagctccatctaatctacgacgaatttcgcctggatccaattaatgattgtggatagacccacacgtctttatgtgtaaatatttacgccgcaaaggtaacgccttttttaattcaatccaaatatttcttcttcttttttttgatatatgactcttttttcttgttcacagtctttttatttgagttttatcccataaaatttccattcactattaaccgattctattaaatctatggatgttgctgtatccgatataaggggaaaatataaagtgaatgtgatatcttgccctgcatattgactttattactaccgaaaagagaaccgacactctcggcgatctaagttatttagcgttatttctcccatttgtcgaggttattcaagagattttatgtaagtttgccacaaaaaacaaaagaataat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF2881:TF2882|TF2881:TF2882:conserved hypothetical protein:conserved hypothetical protein:->->:3072441..3073558 1118 taagcgctttagaagaagtcgtatgtatggcggggactatcacattccgggaacgtctacgcacgaacatcccgtgatattatatagttatcgcatttatcgatacgggggacaaatctttacgcagattgattgcaaaccttgatgcgggagacgaatcaagttcgcagggcttgattttttttattgcaccggcataaaaaatgaagttttttatgtaagttttgcaagaaaagataacttgcttagaataaattaattggtcggactgcttgaaaatagggtaacgagatagcaatcgttcgtatctctgagttcttcatcgttatgcttcaatgtgataactcttgatgctacaaaggtagtaaattccttcaattgactgtagtaagttattaaaaaagagagtgcaattttgaactctcaaaaacttttccccaattctatggcttcaaccaagcactttgaggctttactatcaaacgagcattgttatatgccatttttagtgtgagacaggtacgagcagtatatgtatcatcactaattttgtgaattgccaatgctaaatcaggattaggtgaaccaggagtcaaattaagtggcagcagaagttgaatacggttgttatagaattgtggtacggctaacttgtagttagtttttactctttttttaacctcttcaatagctccatctaatctacgacgaatttcgcctggatccaattaatgattgtggatagacccacacgtctttatgtgtaaatatttacgccgcaaaggtaacgccttttttaattcaatccaaatatttcttcttcttttttttgatatatgactcttttttcttgttcacagtctttttatttgagttttatcccataaaatttccattcactattaaccgattctattaaatctatggatgttgctgtatccgatataaggggaaaatataaagtgaatgtgatatcttgccctgcatattgactttattactaccgaaaagagaaccgacactctcggcgatctaagttatttagcgttatttctcccatttgtcgaggttattcaagagattttatgtaagtttgccacaaaaaacaaaagaataat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 7 Min: 447 Max: 728 Len: 282 Subject: UniRef90_A4ED83 Cluster: Hypothetical protein; n=1; Collinsella aerofaciens ATCC 25986|Rep: Hypothetical protein - Collinsella aerofaciens ATCC 25986 HSP 1 e-value: 2.0E-19 bit: 99.8 Len: 264 Query Start:450 Query End:713 Subject Strand: null Subject Start: 9 Subject End: 93 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................. I R R R L D G A I E E V K K R V K T N Y K L A V P Q F Y N N R I Q L L L P L N L T P G S P N P D L A L A I H K I S D D T Y T A R T C L T L K M A Y N N A R L I V K P Q S A W L K ..................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L R R A F E G A V V E A A R R A A A N Y T L A V P Q F Y G G R I Q L L L P L C L T - - G D K P E L A L T I Q R - E D G F Y A A R T C L T L D M A Y N N A R L I C R P E T S W I K ..................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7X1T0 Cluster: Hypothetical protein; n=1; Pseudomonas syringae pv. syringae|Rep: Hypothetical protein - Pseudomonas syringae pv. syringae HSP 1 e-value: 1.0E-13 bit: 80.1 Len: 282 Query Start:447 Query End:728 Subject Strand: null Subject Start: 165 Subject End: 256 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. L D P G E I R R R L D G A I E E V K K R V K T N Y K L A V P Q F Y N N R I Q L L L P L N L T P G S P N P D L A L A I H K I S D D T Y T A R T C L T L K M A Y N N A R L I V K P Q S A W L K P ...................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. L D E Y A L V S L L E G V I K N A R Q R V R R N Y K T A V P N F Y R G K V Q L M L P L C I S N P S - K A D L A L V I E D - H N S F Y R A A T C L M L D W A Y S N A R L L A K P D K E W L Q P ...................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q67RU3 Cluster: Hypothetical protein; n=1; Symbiobacterium thermophilum|Rep: Hypothetical protein - Symbiobacterium thermophilum HSP 1 e-value: 9.0E-13 bit: 77.4 Len: 270 Query Start:447 Query End:716 Subject Strand: null Subject Start: 275 Subject End: 364 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. E I R R R L D G A I E E V K K R V K T N Y K L A V P Q F Y N N R I Q L L L P L N L T - P G S P N P D L A L A I H K I S D D T Y T A R T C L T L K M A Y N N A R L I V K P Q S A W L K P .................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. E I F A L F Q A A I E F A R I M A R R N Y K L V V P Q Y Y M G Q I Q F L M P I Y L S G E F S G P P D F A L V L Q K M G - D V Y R G N T I L T L D M A Y Q N A R L I A K P D T T W L S P .................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_A1IAP4 Cluster: Hypothetical protein precursor; n=1; Candidatus Desulfococcus oleovorans Hxd3|Rep: Hypothetical protein precursor - Candidatus Desulfococcus oleovorans Hxd3 HSP 1 e-value: 2.0E-12 bit: 76.6 Len: 255 Query Start:447 Query End:701 Subject Strand: null Subject Start: 194 Subject End: 278 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. L D G A I E E V K K R V K T N Y K L A V P Q F Y N N R I Q L L L P L N L T P G S P N P D L A L A I H K I S D - D T Y T A R T C L T L K M A Y N N A R L I V K P Q S A W L K P ................................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. I E G S T R F L K E K I R R N Y K V A I P H W Y S G R I Q L L L P L N L T - S D Y E A D L A L V A D R D D D R K I Y R I R T A L S M D M A Y V N A R L L C R P D R D W L N P ................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q4ES88 Cluster: Hypothetical protein; n=4; Listeria monocytogenes|Rep: Hypothetical protein - Listeria monocytogenes str. 1/2a F6854 HSP 1 e-value: 2.0E-10 bit: 69.7 Len: 276 Query Start:453 Query End:728 Subject Strand: null Subject Start: 168 Subject End: 254 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L D P G E I R R R L D G A I E E V K K R V K T N Y K L A V P Q F Y N N R I Q L L L P L N L T P G S P N P D L A L A I H K I S D D T Y T A R T C L T L K M A Y N N A R L I V K P Q S A W L ...................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L D K S I I I T I L N S S T E Q M K K R I L R N N R L V V P Q Y Y N K R I M Y L A P L R F G K D T - - - - L P L A I E K - H I D S Y R I N T I L T P G M A Y C N A R L I M K P E S N W L ...................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A3X5Q6 Cluster: Hypothetical protein; n=1; Roseobacter sp. MED193|Rep: Hypothetical protein - Roseobacter sp. MED193 HSP 1 e-value: 4.0E-10 bit: 68.6 Len: 270 Query Start:447 Query End:716 Subject Strand: null Subject Start: 299 Subject End: 389 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. E I R R R L D G A I E E V K K R V K T N Y K L A V P Q F Y N - - N R I Q L L L P L N L T P G S P N P D L A L A I H K I S D D T Y T A R T C L T L K M A Y N N A R L I V K P Q S A W L K P .................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. D I R N R I D D A I S L A V K R A R W N F K T A I P L Y Y P K A N A I S L L L P I A L V D D D - K V D L A L V V T R T A A G G Y S G E T V Y K L K W A Y D H A R L V C R P D S D W L T P .................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q3D3B4 Cluster: Hypothetical protein; n=1; Streptococcus agalactiae H36B|Rep: Hypothetical protein - Streptococcus agalactiae H36B HSP 1 e-value: 5.0E-8 bit: 61.6 Len: 261 Query Start:453 Query End:713 Subject Strand: null Subject Start: 184 Subject End: 265 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I R R R L D G A I E E V K K R V K T N Y K L A V P Q F Y N N R I Q L L L P L N L T P G S P N P D L A L A I H K I S D D T Y T A R T C L T L K M A Y N N A R L I V K P Q S A W L ..................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I N A L L N N A I E L T I T K C K R N Y R I A V P Q Y Y R G K I T Y L L P V T I - - - - D G Q L M S V A V E N I - N G R Y R V N T I F T L E M A Y K N A R L L M K P E V D W I ..................................................................................................................................................................................................................................................................................................................................................................................................................... taagcgctttagaagaagtcgtatgtatggcggggactatcacattccgggaacgtctacgcacgaacatcccgtgatattatatagttatcgcatttatcgatacgggggacaaatctttacgcagattgattgcaaaccttgatgcgggagacgaatcaagttcgcagggcttgattttttttattgcaccggcataaaaaatgaagttttttatgtaagttttgcaagaaaagataacttgcttagaataaattaattggtcggactgcttgaaaatagggtaacgagatagcaatcgttcgtatctctgagttcttcatcgttatgcttcaatgtgataactcttgatgctacaaaggtagtaaattccttcaattgactgtagtaagttattaaaaaagagagtgcaattttgaactctcaaaaacttttccccaattctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgattgtggatagacccacacgtctttatgtgtaaatatttacgccgcaaaggtaacgccttttttaattcaatccaaatatttcttcttcttttttttgatatatgactcttttttcttgttcacagtctttttatttgagttttatcccataaaatttccattcactattaaccgattctattaaatctatggatgttgctgtatccgatataaggggaaaatataaagtgaatgtgatatcttgccctgcatattgactttattactaccgaaaagagaaccgacactctcggcgatctaagttatttagcgttatttctcccatttgtcgaggttattcaagagattttatgtaagtttgccacaaaaaacaaaagaataat Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 23 End: 142 ...................... M Y G G D Y H I P G T S T H E H P V I L Y S Y R I Y R Y G G Q I F T Q I D C K P ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 38 Strand: + Start: 84 End: 197 ................................................................................... M V I A F I D T G D K S L R R L I A N L D A G D E S S S Q G L I F F I A P A ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: + Start: 158 End: 256 ............................................................................................................................................................. M K F A G L D F F Y C T G I K N E V F Y V S F A R K D N L L R I N .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 39 Strand: + Start: 395 End: 511 .......................................................................................................................................................................................................................................................................................................................................................................................................... M K K E S A I L N S Q K L F P N S M A S T K H F E A L L S N E H C Y M P F L V ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 736 End: 837 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M W I D P H V F M C K Y L R R K G N A F F N S I Q I F L L L F F D I ......................................................................................................................................................................................................................................................................................... Protein_Len: 49 Strand: + Start: 770 End: 916 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M Y A A K V T P F L I Q S K Y F F F F F L I Y D S F F L F T V F L F E F Y P I K F P F T I N R F Y .......................................................................................................................................................................................................... Protein_Len: 45 Strand: + Start: 982 End: 1116 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M H I D F I T T E K R T D T L G D L S Y L A L F L P F V E V I Q E I L C K F A T K N K R I .. Protein_Len: 36 Strand: - Start: 925 End: 1032 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ P H Q Q I R Y L P F I Y L S H S I K G Q M N V K N S G F L S G V S E A M ...................................................................................... Protein_Len: 39 Strand: - Start: 906 End: 1022 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G I R N F R H I N S Y G I Y P S F I F H I H Y R A R C I S K I V V S F L V S M ................................................................................................ Protein_Len: 35 Strand: - Start: 869 End: 973 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K L K I G Y F K W E S N V S E I L D I S T A T D S I L P F Y L T F T M ................................................................................................................................................. Protein_Len: 35 Strand: - Start: 732 End: 836 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... H N H I S G C T K I H L Y K R R L P L A K K L E I W I N R R R K K S M .......................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 447 End: 728 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. K H I A L A L D P N P S G P T L N L P L L L Q I R N N Y F Q P V A L K Y N T K V R K K V E E I A G D L R R R I E G P D M ...................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: - Start: 329 End: 442 ........................................................................................................................................................................................................................................................................................................................................ A E I H Y S K I S C L Y Y I G E I S Q L L N N F F L T C N Q V R L F K E G M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: - Start: 259 End: 414 .................................................................................................................................................................................................................................................................. N T P S S S F L T V L Y C D N T D R L E E D N H K L T I V R S A V F T T F E K L Q S Y Y T I L F S L A M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 83 End: 298 .................................................................................. K R L N I A F R S A P S S D L E C P K I K K I A G A Y F I F N K I Y T K C S F I V Q K S Y I L Q D S Q K F I P Y R S L M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taagcgctttagaagaagtcgtatgtatggcggggactatcacattccgggaacgtctacgcacgaacatcccgtgatattatatagttatcgcatttatcgatacgggggacaaatctttacgcagattgattgcaaaccttgatgcgggagacgaatcaagttcgcagggcttgattttttttattgcaccggcataaaaaatgaagttttttatgtaagttttgcaagaaaagataacttgcttagaataaattaattggtcggactgcttgaaaatagggtaacgagatagcaatcgttcgtatctctgagttcttcatcgttatgcttcaatgtgataactcttgatgctacaaaggtagtaaattccttcaattgactgtagtaagttattaaaaaagagagtgcaattttgaactctcaaaaacttttccccaattctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgattgtggatagacccacacgtctttatgtgtaaatatttacgccgcaaaggtaacgccttttttaattcaatccaaatatttcttcttcttttttttgatatatgactcttttttcttgttcacagtctttttatttgagttttatcccataaaatttccattcactattaaccgattctattaaatctatggatgttgctgtatccgatataaggggaaaatataaagtgaatgtgatatcttgccctgcatattgactttattactaccgaaaagagaaccgacactctcggcgatctaagttatttagcgttatttctcccatttgtcgaggttattcaagagattttatgtaagtttgccacaaaaaacaaaagaataat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 528 End: 557 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACAAAATTAGTGATGATACATATACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taagcgctttagaagaagtcgtatgtatggcggggactatcacattccgggaacgtctacgcacgaacatcccgtgatattatatagttatcgcatttatcgatacgggggacaaatctttacgcagattgattgcaaaccttgatgcgggagacgaatcaagttcgcagggcttgattttttttattgcaccggcataaaaaatgaagttttttatgtaagttttgcaagaaaagataacttgcttagaataaattaattggtcggactgcttgaaaatagggtaacgagatagcaatcgttcgtatctctgagttcttcatcgttatgcttcaatgtgataactcttgatgctacaaaggtagtaaattccttcaattgactgtagtaagttattaaaaaagagagtgcaattttgaactctcaaaaacttttccccaattctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgattgtggatagacccacacgtctttatgtgtaaatatttacgccgcaaaggtaacgccttttttaattcaatccaaatatttcttcttcttttttttgatatatgactcttttttcttgttcacagtctttttatttgagttttatcccataaaatttccattcactattaaccgattctattaaatctatggatgttgctgtatccgatataaggggaaaatataaagtgaatgtgatatcttgccctgcatattgactttattactaccgaaaagagaaccgacactctcggcgatctaagttatttagcgttatttctcccatttgtcgaggttattcaagagattttatgtaagtttgccacaaaaaacaaaagaataat Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 48 HP_score: -2.8 Tail_Score: -3.61654 Start: 140 End: 164 Full_Region: aatcaagccctgcga acttgattcg tctcc cgcatcaagg tttgcaatcaatctg ...........................................................................................................................................acttgattcgtctcccgcatcaagg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -6.0 Tail_Score: -6.09888 Start: 159 End: 177 Full_Region: GATGCGGGAGACGAA TCAAGTTC GCA GGGCTTGA TTTTTTTTATTGCAC ..............................................................................................................................................................TCAAGTTCGCAGGGCTTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 90 HP_score: -7.3 Tail_Score: -5.18357 Start: 404 End: 425 Full_Region: tggggaaaagttttt gagagttca aaat tgcactctc ttttttaataactta ...................................................................................................................................................................................................................................................................................................................................................................................................................gagagttcaaaattgcactctc..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 62 HP_score: -3.2 Tail_Score: -4.4715 Start: 506 End: 547 Full_Region: TGTTATATGCCATTT TTAGTGTGAGACAGGTAC GAGCA GTATATGTATCATCACTAA TTTTGTGAATTGCCA .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGTGAGACAGGTACGAGCAGTATATGTATCATCACTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 85 HP_score: -7.2 Tail_Score: -5.04265 Start: 647 End: 661 Full_Region: AGAATTGTGGTACGG CTAACT TGT AGTTAG TTTTTACTCTTTTTT ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACTTGTAGTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TF2881:TF2882|TF2881:TF2882:conserved hypothetical protein:conserved hypothetical protein:->->:3072441..3073558 1118 taagcgctttagaagaagtcgtatgtatggcggggactatcacattccgggaacgtctacgcacgaacatcccgtgatattatatagttatcgcatttatcgatacgggggacaaatctttacgcagattgattgcaaaccttgatgcgggagacgaatcaagttcgcagggcttgattttttttattgcaccggcataaaaaatgaagttttttatgtaagttttgcaagaaaagataacttgcttagaataaattaattggtcggactgcttgaaaatagggtaacgagatagcaatcgttcgtatctctgagttcttcatcgttatgcttcaatgtgataactcttgatgctacaaaggtagtaaattccttcaattgactgtagtaagttattaaaaaagagagtgcaattttgaactctcaaaaacttttccccaattctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgattgtggatagacccacacgtctttatgtgtaaatatttacgccgcaaaggtaacgccttttttaattcaatccaaatatttcttcttcttttttttgatatatgactcttttttcttgttcacagtctttttatttgagttttatcccataaaatttccattcactattaaccgattctattaaatctatggatgttgctgtatccgatataaggggaaaatataaagtgaatgtgatatcttgccctgcatattgactttattactaccgaaaagagaaccgacactctcggcgatctaagttatttagcgttatttctcccatttgtcgaggttattcaagagattttatgtaagtttgccacaaaaaacaaaagaataat Intra-Species Hit: Count: 1 Min: 1 Max: 1118 Len: 1118 Subject: tfor_TF2881_TF2882|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[3072441,3073558]|1118 HSP 1 e-value: 0.0 bit: 837.0 Len: 446 Query Start:1 Query End:446 Subject Strand: POSITIVE Subject Start: 1 Subject End: 446 taagcgctttagaagaagtcgtatgtatggcggggactatcacattccgggaacgtctacgcacgaacatcccgtgatattatatagttatcgcatttatcgatacgggggacaaatctttacgcagattgattgcaaaccttgatgcgggagacgaatcaagttcgcagggcttgannnnnnnnattgcaccggcataaaaaatgaagttttttatgtaagttttgcaagaaaagataacttgcttagaataaattaattggtcggactgcttgaaaatagggtaacgagatagcaatcgttcgtatctctgagttcttcatcgttatgcttcaatgtgataactcttgatgctacaaaggtagtaaattccttcaattgactgtagtaagttattaaaaaagagagtgcaattttgaactctcaaaaacttttccccaattcta................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ taagcgctttagaagaagtcgtatgtatggcggggactatcacattccgggaacgtctacgcacgaacatcccgtgatattatatagttatcgcatttatcgatacgggggacaaatctttacgcagattgattgcaaaccttgatgcgggagacgaatcaagttcgcagggcttgattttttttattgcaccggcataaaaaatgaagttttttatgtaagttttgcaagaaaagataacttgcttagaataaattaattggtcggactgcttgaaaatagggtaacgagatagcaatcgttcgtatctctgagttcttcatcgttatgcttcaatgtgataactcttgatgctacaaaggtagtaaattccttcaattgactgtagtaagttattaaaaaagagagtgcaattttgaactctcaaaaacttttccccaattcta................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-133 bit: 476.0 Len: 240 Query Start:879 Query End:1118 Subject Strand: POSITIVE Subject Start: 879 Subject End: 1118 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcccataaaatttccattcactattaaccgattctattaaatctatggatgttgctgtatccgatataaggggaaaatataaagtgaatgtgatatcttgccctgcatattgactttattactaccgaaaagagaaccgacactctcggcgatctaagttatttagcgttatttctcccatttgtcgaggttattcaagagattttatgtaagtttgccacaaaaaacaaaagaataat ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcccataaaatttccattcactattaaccgattctattaaatctatggatgttgctgtatccgatataaggggaaaatataaagtgaatgtgatatcttgccctgcatattgactttattactaccgaaaagagaaccgacactctcggcgatctaagttatttagcgttatttctcccatttgtcgaggttattcaagagattttatgtaagtttgccacaaaaaacaaaagaataat HSP 3 e-value: 3.0E-46 bit: 188.0 Len: 95 Query Start:729 Query End:823 Subject Strand: POSITIVE Subject Start: 729 Subject End: 823 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaatgattgtggatagacccacacgtctttatgtgtaaatatttacgccgcaaaggtaacgccttttttaattcaatccaaatatttcttcttc....................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaatgattgtggatagacccacacgtctttatgtgtaaatatttacgccgcaaaggtaacgccttttttaattcaatccaaatatttcttcttc....................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGCGCUUUAGAAGAAGUCGUAUGUAUGGCGGGGACUAUCACAUUCCGGGAACGUCUACGCACGAACAUCCCGUGAUAUUAUAUAGUUAUCGCAUUUAUCGAUACGGGGGACAAAUCUUUACGCAGAUUGAUUGCAAACCUUGAUGCGGGAGACGAAUCAAGUUCGCAGGGCUUGAUUUUUUUUAUUGCACCGGCAUAAAAAAUGAAGUUUUUUAUGUAAGUUUUGCAAGAAAAGAUAACUUGCUUAGAAUAAAUUAAUUGGUCGGACUGCUUGAAAAUAGGGUAACGAGAUAGCAAUCGUUCGUAUCUCUGAGUUCUUCAUCGUUAUGCUUCAAUGUGAUAACUCUUGAUGCUACAAAGGUAGUAAAUUCCUUCAAUUGACUGUAGUAAGUUAUUAAAAAAGAGAGUGCAAUUUUGAACUCUCAAAAACUUUUCCCCAAUUCUAUGGCUUCAACCAAGCACUUUGAGGCUUUACUAUCAAACGAGCAUUGUUAUAUGCCAUUUUUAGUGUGAGACAGGUACGAGCAGUAUAUGUAUCAUCACUAAUUUUGUGAAUUGCCAAUGCUAAAUCAGGAUUAGGUGAACCAGGAGUCAAAUUAAGUGGCAGCAGAAGUUGAAUACGGUUGUUAUAGAAUUGUGGUACGGCUAACUUGUAGUUAGUUUUUACUCUUUUUUUAACCUCUUCAAUAGCUCCAUCUAAUCUACGACGAAUUUCGCCUGGAUCCAAUUAAUGAUUGUGGAUAGACCCACACGUCUUUAUGUGUAAAUAUUUACGCCGCAAAGGUAACGCCUUUUUUAAUUCAAUCCAAAUAUUUCUUCUUCUUUUUUUUGAUAUAUGACUCUUUUUUCUUGUUCACAGUCUUUUUAUUUGAGUUUUAUCCCAUAAAAUUUCCAUUCACUAUUAACCGAUUCUAUUAAAUCUAUGGAUGUUGCUGUAUCCGAUAUAAGGGGAAAAUAUAAAGUGAAUGUGAUAUCUUGCCCUGCAUAUUGACUUUAUUACUACCGAAAAGAGAACCGACACUCUCGGCGAUCUAAGUUAUUUAGCGUUAUUUCUCCCAUUUGUCGAGGUUAUUCAAGAGAUUUUAUGUAAGUUUGCCACAAAAAACAAAAGAAUAAU ..(((((((((((.(((((((((((((.(((((((..(((((((((((.....(((......)))....((((((((((.........))))))...(((((((((((((((.(((.(((.....((((((..((((((.(((..(((((((((.((((((((((.....)))))))))).)))).)))))...(((((((((((...)))))))))))))).)))))).(((((((..((((((((((......((((((((..(((((((((...........(((((........))))).(((((...(((((..(((.((((.......))))))).)))))..))))).....)))))).....))).))))))))))).)))))))((((((((((((((((((..((((((....)))))).................(((......))).))))...(((((.(((((........(((((((.((....(((...(((((((((.(((.((((.....)))).))).))).))))))...)).)...)).)))))))......((((((((((((...(..((...((((..(((.(((....((((((...(((((....((((..((((...(((((((.....))))))).))))..))))..)))))..)))))).))))))..))))..))..)....))))))).)))))...(((.((((((((......))))).))).))).((((((....))))))......))))).)))))...........................))))))))))))))........))))))).......))))))........))).))).))))....(((.(((((............((((......)))).))))).))).)))))).)))))....)))).........).))))))))))))))))).)))))).))))))).......((((...(((........)))))))...))))).......))))))..........(((((((((.((((..(((....)))..)))).))))..)))))............... (-271.15) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUAUUCUUUUGUUUUUUGUGGCAAACUUACAUAAAAUCUCUUGAAUAACCUCGACAAAUGGGAGAAAUAACGCUAAAUAACUUAGAUCGCCGAGAGUGUCGGUUCUCUUUUCGGUAGUAAUAAAGUCAAUAUGCAGGGCAAGAUAUCACAUUCACUUUAUAUUUUCCCCUUAUAUCGGAUACAGCAACAUCCAUAGAUUUAAUAGAAUCGGUUAAUAGUGAAUGGAAAUUUUAUGGGAUAAAACUCAAAUAAAAAGACUGUGAACAAGAAAAAAGAGUCAUAUAUCAAAAAAAAGAAGAAGAAAUAUUUGGAUUGAAUUAAAAAAGGCGUUACCUUUGCGGCGUAAAUAUUUACACAUAAAGACGUGUGGGUCUAUCCACAAUCAUUAAUUGGAUCCAGGCGAAAUUCGUCGUAGAUUAGAUGGAGCUAUUGAAGAGGUUAAAAAAAGAGUAAAAACUAACUACAAGUUAGCCGUACCACAAUUCUAUAACAACCGUAUUCAACUUCUGCUGCCACUUAAUUUGACUCCUGGUUCACCUAAUCCUGAUUUAGCAUUGGCAAUUCACAAAAUUAGUGAUGAUACAUAUACUGCUCGUACCUGUCUCACACUAAAAAUGGCAUAUAACAAUGCUCGUUUGAUAGUAAAGCCUCAAAGUGCUUGGUUGAAGCCAUAGAAUUGGGGAAAAGUUUUUGAGAGUUCAAAAUUGCACUCUCUUUUUUAAUAACUUACUACAGUCAAUUGAAGGAAUUUACUACCUUUGUAGCAUCAAGAGUUAUCACAUUGAAGCAUAACGAUGAAGAACUCAGAGAUACGAACGAUUGCUAUCUCGUUACCCUAUUUUCAAGCAGUCCGACCAAUUAAUUUAUUCUAAGCAAGUUAUCUUUUCUUGCAAAACUUACAUAAAAAACUUCAUUUUUUAUGCCGGUGCAAUAAAAAAAAUCAAGCCCUGCGAACUUGAUUCGUCUCCCGCAUCAAGGUUUGCAAUCAAUCUGCGUAAAGAUUUGUCCCCCGUAUCGAUAAAUGCGAUAACUAUAUAAUAUCACGGGAUGUUCGUGCGUAGACGUUCCCGGAAUGUGAUAGUCCCCGCCAUACAUACGACUUCUUCUAAAGCGCUUA ................(((..((((((((............((((......)))).....((((((......((((........(((..(((((.....)))))..)))......)))).....((((((..((((((((..(((.((.((((((((....................((((........))))...(((((....))))).......))))))))))..((((((.((((................(((((((.....(((..(.((((((..............((.(((......((((((((.((((((.....((((...(((((.(..((((....)))).).)))))))))(((((....))))).....)))))).)))))))).....))).))...((((((.((((((..(((((..((((......(((((.....(((((.....)))))..(.....).))))).....))))...))))).....))).))).)))))))))))).)..)))......(((..((((.((((((((...........((((((.(((.(((..(((.....)))..))).)))))))))(((((((((......)))).))))).........)))....))))).((((....))))..))))..)))..(((((...((((((.((....)).)))))).........)))))..)))))))..(((((((......((((....))))......(((((....(((((........)))))...))))).(((((((((....))).)))))).........)))))))...)))).(((................(((((.........)))))........(((((((((.....)))))))))..)))...))))))...)))..))))))))...))))))..))))))......))))))))...)))...((((..(((...(((...(((((......)))))...(((((...((((..(((((....(((......))).)))))..)))).)))))...............)))....)))...))))... (-251.44) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 446 160 111 156 104 tfor:TF2501|5end_DNA_mismatch_repair_protein_2676280..2676510_POSITIVE 405 140 95 195 141 tfor:TF0625|5end_hypothetical_protein_661143..661373_POSITIVE 371 150 101 62 13 tfor:TF0200|5end_2-nitropropane_dioxygenase_225061..225291_POSITIVE 366 196 153 111 65 tfor:TF2849|5end_histidinol-phosphate_transaminase_3037288..3037518_POSITIVE 359 166 123 195 133 tfor:TF1681|5end_dTDP-4-keto-L-rhamnose_reductase_1794904..1795134_POSITIVE 354 76 31 194 149 tfor:TF0950|5end_ribosomal_large_subunit_pseudouridine_synthase_D_(pseudouridylate_synthase)_(uracil_hydrolyase)_994630..994860_POSITIVE 352 169 122 92 52 tfor:TF0018|5end_hypothetical_protein_11250..11480_POSITIVE 336 77 31 72 25 tfor:TF2205|5end_conserved_hypothetical_protein;_possible_transcriptional_regulator_2379055..2379285_POSITIVE 335 65 28 99 46 tfor:TF0122|5end_hypothetical_protein_133162..133392_POSITIVE 334 1065 1026 68 31 tfor:TF2439|5end_conserved_hypothetical_protein_2616380..2616610_POSITIVE 334 170 122 226 181 tfor:TF1634|5end_hypothetical_protein_1746831..1747061_POSITIVE 334 75 31 61 18 tfor:TF1215|5end_haloacid_dehalogenase-like_hydrolase_1302510..1302740_POSITIVE 330 50 1 77 18 tfor:TF1058|5end_N-acetylglucosamine_kinase_1125863..1126093_POSITIVE 329 63 21 102 59 tfor:TF0187|5end_ferredoxin_202151..202381_POSITIVE 326 647 601 76 32 tfor:TF0845|5end_hypothetical_protein_896419..896649_POSITIVE 324 70 29 152 106 tfor:TF1260|5end_chaperone_protein_DnaJ_1345325..1345555_POSITIVE 324 176 132 53 6 tfor:TF0689|5end_hypothetical_protein_734419..734649_POSITIVE 322 150 105 56 7 tfor:TF1559|5end_glycosyltransferase_1665879..1666109_POSITIVE 321 1047 1016 166 134 tfor:TF2434|5end_conserved_hypothetical_protein_2613969..2614199_POSITIVE 320 149 106 60 23 tfor:TF1609|5end_hypothetical_protein_1728340..1728570_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 433 152 114 151 113 tfor:TF2517|3end_hypothetical_protein_2695480..2695630_POSITIVE 366 196 153 132 86 tfor:TF2848|3end_cobalamin_biosynthesis_protein_3037389..3037539_POSITIVE 352 175 134 88 41 tfor:TF0603|3end_glycosyltransferase_634838..634988_POSITIVE 352 169 122 146 106 tfor:TF0018|3end_hypothetical_protein_12091..12241_POSITIVE 340 108 61 83 39 tfor:TF3113|3end_hypothetical_protein_3349706..3349856_POSITIVE 336 77 31 59 12 tfor:TF2204|3end_conserved_hypothetical_protein_2379122..2379272_POSITIVE 335 65 28 74 21 tfor:TF0121|3end_hypothetical_protein_133217..133367_POSITIVE 334 170 122 146 101 tfor:TF1635|3end_conserved_hypothetical_protein;_possible_helicase_1746831..1746981_POSITIVE 322 150 105 56 7 tfor:TF1558|3end_possible_heme_biosynthesis_protein_1665959..1666109_POSITIVE 320 149 106 103 66 tfor:TF1608|3end_sulfate_transporter_1728463..1728613_POSITIVE 317 306 263 54 10 tfor:TF2206|3end_conserved_hypothetical_protein;_possible_sugar_phosphate_isomerase/epimerase_2380987..2381137_POSITIVE 314 1047 1004 52 11 tfor:TF2900|3end_conserved_hypothetical_protein_3090029..3090179_POSITIVE 313 170 121 68 12 tfor:TF1678|3end_periplasmic_protease_1792511..1792661_POSITIVE 310 111 71 146 109 tfor:TF0524|3end_possible_cation_efflux_pump_(multidrug_resistance_protein)_549332..549482_POSITIVE 309 195 151 99 52 tfor:TF2433|3end_possible_UDP-2,3-diacylglucosamine_hydrolase_2614043..2614193_POSITIVE 308 1050 1001 91 38 tfor:TF2353|3end_conserved_hypothetical_protein_2518608..2518758_POSITIVE 305 779 732 97 32 tfor:TF0573|3end_DNA_polymerase_III,_delta_subunit_604852..605002_POSITIVE 301 173 142 131 95 tfor:TF2643|3end_possible_O-antigen_transporter_2813071..2813221_POSITIVE 300 179 146 70 30 tfor:TF3070|3end_conserved_hypothetical_protein_3294783..3294933_POSITIVE 300 75 31 50 14 tfor:TF2422|3end_hypothetical_protein_2601677..2601827_POSITIVE