Origin IGS: taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacatcccccctcccccccttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcagggggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaagaggtaacacccatgggagggctgaaagcctgaattaattcagcgatca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgatcgctgaattaattcaggctttcagccctcccatgggtgttacctctttccccaacgcttcgcattgggctgaattaacacagccctttcagggctgttacagcggtcagcagtcagccccctgcattcccccttttgaagggataacatccccccttcgcttcgctcttcctccctttgaagggggggaggggggatgtccctctgcgttcggataccgtgtacccggcataacaattaacacctgacaattaaccattaatttgtcattcagagcgaagcgaagaatctcttcccttttccccgcgagattcctcactgcgttcggaatgacaaagggtggcgttcgtaatgacaaacacagttatttgcgttgattcgcgttatttgcgaaatttgcgttcggataacccggcataacaattgacaattaaccatta Mask Tandem Repeat Region ================================================ taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacatcccccctcccccccttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcagggggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaagaggtaacacccatgggagggctgaaagcctgaattaattcagcgatca Find is-nt database================================================ Query_seq: TF2823:TF2824|TF2823:TF2824:TPR-containing protein:nucleoside-transporting protein nupG:->->:3014398..3014840 443 taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacatcccccctcccccccttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcagggggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaagaggtaacacccatgggagggctgaaagcctgaattaattcagcgatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF2823:TF2824|TF2823:TF2824:TPR-containing protein:nucleoside-transporting protein nupG:->->:3014398..3014840 443 taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacatcccccctcccccccttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcagggggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaagaggtaacacccatgggagggctgaaagcctgaattaattcagcgatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF2823:TF2824|TF2823:TF2824:TPR-containing protein:nucleoside-transporting protein nupG:->->:3014398..3014840 443 taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacatcccccctcccccccttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcagggggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaagaggtaacacccatgggagggctgaaagcctgaattaattcagcgatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacatcccccctcccccccttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcagggggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaagaggtaacacccatgggagggctgaaagcctgaattaattcagcgatca Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 3 End: 122 .. M V N C Q L L C R V I R T Q I S Q I T R I N A N N C V C H Y E R H P L S F R T Q ................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 73 End: 171 ........................................................................ M T V F V I T N A T L C H S E R S E E S R G E K G R D S S L R S E ................................................................................................................................................................................................................................................................................ Protein_Len: 45 Strand: + Start: 190 End: 324 ............................................................................................................................................................................................. M S G V N C Y A G Y T V S E R R G T S P L P P F K G R K S E A K G G C Y P F K R G N A G G ....................................................................................................................... Protein_Len: 60 Strand: + Start: 77 End: 331 ............................................................................ M C L S L R T P P F V I P N A V R N L A G K R E E I L R F A L N D K L M V N C Q V L I V M P G T R Y P N A E G H P P S P ................................................................................................................ Protein_Len: 60 Strand: + Start: 204 End: 398 ........................................................................................................................................................................................................... M L C R V H G I R T Q R D I P P P P L Q R E E E R S E G G M L S L Q K G E C R G L T A D R C N S P E R A V L I Q P N A K ............................................. Protein_Len: 60 Strand: - Start: 196 End: 441 ................................................................................................................................................................................................... F P P L A F R L P S T I G E F P P I C P A S Q Q G S Y C G Q F P Q T L E A W H S A N P F S T V G M P P S F A Q I L E A M .. Protein_Len: 39 Strand: - Start: 67 End: 183 .................................................................. R L Y S H K D N R V G G K T M G F A T L F R A P F L S S I R R K A R F S L N M .................................................................................................................................................................................................................................................................... taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacatcccccctcccccccttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcagggggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaagaggtaacacccatgggagggctgaaagcctgaattaattcagcgatca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacatcccccctcccccccttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcagggggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaagaggtaacacccatgggagggctgaaagcctgaattaattcagcgatca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 70 HP_score: -9.7 Tail_Score: -3.33815 Start: 342 End: 362 Full_Region: ACTGCTGACCGCTGT AACAGCCCT GAA AGGGCTGTG TTAATTCAGCCCAAT .....................................................................................................................................................................................................................................................................................................................................................AACAGCCCTGAAAGGGCTGTG................................................................................. TransTerm Strand: + Conf: 79 HP_score: -12.3 Tail_Score: -3.23853 Start: 344 End: 360 Full_Region: TGCTGACCGCTGTAA CAGCCCT GAA AGGGCTG TGTTAATTCAGCCCA .......................................................................................................................................................................................................................................................................................................................................................CAGCCCTGAAAGGGCTG................................................................................... Find igs database================================================ Query_seq: TF2823:TF2824|TF2823:TF2824:TPR-containing protein:nucleoside-transporting protein nupG:->->:3014398..3014840 443 taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacatcccccctcccccccttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcagggggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaagaggtaacacccatgggagggctgaaagcctgaattaattcagcgatca Intra-Species Hit: Count: 22 Min: 1 Max: 443 Len: 443 Subject: tfor_TF2823_TF2824|TPR-containing protein:nucleoside-transporting protein nupG|POSITIVE:POSITIVE|[3014398,3014840]|443 HSP 1 e-value: 1.0E-135 bit: 484.0 Len: 244 Query Start:1 Query End:244 Subject Strand: POSITIVE Subject Start: 1 Subject End: 244 taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacat....................................................................................................................................................................................................... taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacat....................................................................................................................................................................................................... HSP 2 e-value: 1.0E-100 bit: 367.0 Len: 185 Query Start:259 Query End:443 Subject Strand: POSITIVE Subject Start: 259 Subject End: 443 ..................................................................................................................................................................................................................................................................ttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcagggggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaagaggtaacacccatgggagggctgaaagcctgaattaattcagcgatca ..................................................................................................................................................................................................................................................................ttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcagggggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaagaggtaacacccatgggagggctgaaagcctgaattaattcagcgatca Subject: tfor_TF2921_TF2922|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[3118851,3119261]|411 HSP 1 e-value: 1.0E-61 bit: 238.0 Len: 187 Query Start:7 Query End:193 Subject Strand: NEGATIVE Subject Start: 83 Subject End: 269 ......ttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgt.......................................................................................................................................................................................................................................................... ......ttaatggttaattgttatgcgtggttatccgaacgcaaatttcgcaaatgacgcgaatcaacgcaaataaccgcgtttgtcattccgaacgccaccctttgtcattccgaacgtagtgaggaatcccgtgggg-aaaggaaaaagattcttcgcttacgctctgaatgacaaattaatggttaattgt.......................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-37 bit: 157.0 Len: 102 Query Start:92 Query End:193 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 357 ...........................................................................................cgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgt.......................................................................................................................................................................................................................................................... ...........................................................................................cgaacgccgccctttgtcattccgaacgtagtgaggaatctcacggggaagagggaagagattcttcgcttacgctctgaatgacaaattaatggttaattgt.......................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-14 bit: 81.8 Len: 57 Query Start:178 Query End:234 Subject Strand: NEGATIVE Subject Start: 351 Subject End: 407 .................................................................................................................................................................................attaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgc................................................................................................................................................................................................................. .................................................................................................................................................................................attaatggttaattgtcaattgttaatggttatgccgggtacacggaatccgaacgc................................................................................................................................................................................................................. Subject: tfor_TF1483_TF1484|glycosyltransferase family protein:penicillin binding protein|POSITIVE:POSITIVE|[1578886,1579698]|813 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 142 Query Start:103 Query End:244 Subject Strand: POSITIVE Subject Start: 223 Subject End: 365 ......................................................................................................ctttgtcattccgaacgcagtgaggaatctcgcgg-ggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacat....................................................................................................................................................................................................... ......................................................................................................ctttgtcattccgaacgtagtgaggaatcccgccccggtaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaattgttaattgttatgccgggtacatggtatccgaccgcagaggaacat....................................................................................................................................................................................................... HSP 2 e-value: 5.0E-18 bit: 93.7 Len: 67 Query Start:178 Query End:244 Subject Strand: POSITIVE Subject Start: 1 Subject End: 67 .................................................................................................................................................................................attaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacat....................................................................................................................................................................................................... .................................................................................................................................................................................attaatggttaattgtcaattgttaattgttatgccgggtacatggtatccgaccgcagaggaacat....................................................................................................................................................................................................... HSP 3 e-value: 2.0E-17 bit: 91.7 Len: 54 Query Start:259 Query End:312 Subject Strand: POSITIVE Subject Start: 85 Subject End: 138 ..................................................................................................................................................................................................................................................................ttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaaggggg................................................................................................................................... ..................................................................................................................................................................................................................................................................ttcaaaggggggaagagcgaagcgaaggggggatgttatcccttcaaagggggg................................................................................................................................... Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 212 Query Start:33 Query End:244 Subject Strand: NEGATIVE Subject Start: 495 Subject End: 700 ................................atccgaacgcaaatttcgcaaataa-cgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacat....................................................................................................................................................................................................... ................................atccgaacgcaaatttcgcaaatgggcgcaaatcaacgcaaataacaatctttgtcattccgaacacctcctcttgtcattccgaacaccgtgaggaatctcgcggggtaaagggaagagattcatcgcttcgctctgaatgacaaattaatggtcaat-------tgttaattgttatgcgtggtacacggtatccgagcgctgaggaacat....................................................................................................................................................................................................... HSP 2 e-value: 1.0E-21 bit: 105.0 Len: 61 Query Start:147 Query End:207 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 208 ..................................................................................................................................................aagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgt............................................................................................................................................................................................................................................ ..................................................................................................................................................aagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaattgttaattgt............................................................................................................................................................................................................................................ HSP 3 e-value: 1.0E-9 bit: 65.9 Len: 61 Query Start:259 Query End:319 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 89 ..................................................................................................................................................................................................................................................................ttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcag............................................................................................................................ ..................................................................................................................................................................................................................................................................ttcaaaggggggaagagcggagcgaaagggggatgtcatcctttcaaa-gggggaatgcag............................................................................................................................ HSP 4 e-value: 7.0E-8 bit: 60.0 Len: 61 Query Start:259 Query End:319 Subject Strand: NEGATIVE Subject Start: 420 Subject End: 480 ..................................................................................................................................................................................................................................................................ttcaaagggaggaa-gagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcag............................................................................................................................ ..................................................................................................................................................................................................................................................................ttcaaagggaggaaagagcgtagcgaaagggggatgtcatcctttcaaa-gggggaatgcag............................................................................................................................ HSP 5 e-value: 7.0E-8 bit: 60.0 Len: 50 Query Start:329 Query End:378 Subject Strand: NEGATIVE Subject Start: 832 Subject End: 880 ........................................................................................................................................................................................................................................................................................................................................tgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatg................................................................. ........................................................................................................................................................................................................................................................................................................................................tgctgaccgttgtaacagccctgaaagggc-gcattaattcagcccaatg................................................................. Subject: tfor_TF1848_TF1850|conserved hypothetical protein:Na+/H+-exchanging protein|POSITIVE:POSITIVE|[1998005,1998681]|677 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 137 Query Start:104 Query End:240 Subject Strand: POSITIVE Subject Start: 455 Subject End: 592 .......................................................................................................tttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagaggg........................................................................................................................................................................................................... .......................................................................................................tttgtcattccgaacaccgtgaggaatctcgcaggggaaagggaagagattcttcgctgacgctctgaatgacaaattaatggttaatggtcaatggttaattgttatgccgggtacacggaatccgagcgcagaggg........................................................................................................................................................................................................... HSP 2 e-value: 7.0E-14 bit: 79.8 Len: 60 Query Start:185 Query End:244 Subject Strand: POSITIVE Subject Start: 183 Subject End: 242 ........................................................................................................................................................................................gttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacat....................................................................................................................................................................................................... ........................................................................................................................................................................................gttaattgtcaatggttaattgttatgccgggtacacggaatccgaacgcagaggaacat....................................................................................................................................................................................................... HSP 3 e-value: 3.0E-10 bit: 67.9 Len: 65 Query Start:32 Query End:96 Subject Strand: POSITIVE Subject Start: 404 Subject End: 469 ...............................tatccgaacgcaaatttcgcaaataa-cgcgaatcaacgcaaataactgtgtttgtcattacgaac........................................................................................................................................................................................................................................................................................................................................................... ...............................tatccgaacgcgaatttcgtaaatgggcgcaaatcaacgcaaataactgtgtttgtcattccgaac........................................................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 1.0E-9 bit: 65.9 Len: 59 Query Start:259 Query End:317 Subject Strand: POSITIVE Subject Start: 256 Subject End: 315 ..................................................................................................................................................................................................................................................................ttcaaagggaggaa-gagcgaa-gcgaaggggggatgttatcccttcaaaagggggaatgc.............................................................................................................................. ..................................................................................................................................................................................................................................................................ttcaaaggggggaaagagcgaaagcgaaggggggatgttatcccttc-aaagggggaatgc.............................................................................................................................. Subject: tfor_TF2817_TF2818|hypothetical protein:acetylornithine aminotransferase|POSITIVE:POSITIVE|[3007687,3007878]|192 HSP 1 e-value: 6.0E-39 bit: 163.0 Len: 98 Query Start:147 Query End:244 Subject Strand: POSITIVE Subject Start: 8 Subject End: 105 ..................................................................................................................................................aagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacat....................................................................................................................................................................................................... ..................................................................................................................................................aagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaatggttaattgttatgccgggtacacggtatccgaacgcagaggaacat....................................................................................................................................................................................................... HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 57 Query Start:259 Query End:315 Subject Strand: POSITIVE Subject Start: 115 Subject End: 170 ..................................................................................................................................................................................................................................................................ttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaat................................................................................................................................ ..................................................................................................................................................................................................................................................................ttcaaaggggggaagagcggagcgaagaggg-atgttatcccttcaaaggggggaat................................................................................................................................ Subject: tfor_TF2997_TF2998|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[3211725,3211950]|226 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 106 Query Start:88 Query End:193 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 114 .......................................................................................attacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgt.......................................................................................................................................................................................................................................................... .......................................................................................attacgaacgccatcctttgtcattccgaacgtagtgaggaatcccgtggggaaaaga-atgagattcttcgcttcgctctgaatgacaaattaatggttaattgt.......................................................................................................................................................................................................................................................... Subject: tfor_TF1578_TF1579|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1686477,1687028]|552 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 140 Query Start:105 Query End:244 Subject Strand: NEGATIVE Subject Start: 380 Subject End: 521 ........................................................................................................ttgtcattccgaacgcagtgaggaatctcgcgggg-aaaagggaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacat....................................................................................................................................................................................................... ........................................................................................................ttgtcattccgaacgcagtgaggaatctcgcggggtaaaagaaaagagattcatcgctcacgctctgaatgacatattaattgttaatggttaattgttaattgttatgcgtggtacacggtatccgagcgcagagggacat....................................................................................................................................................................................................... HSP 2 e-value: 6.0E-30 bit: 133.0 Len: 89 Query Start:105 Query End:193 Subject Strand: NEGATIVE Subject Start: 31 Subject End: 121 ........................................................................................................ttgtcattccgaacgcagtgaggaatctcgcggggaaaagg-gaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgt.......................................................................................................................................................................................................................................................... ........................................................................................................ttgtcattccgaacgcagtgaggaatctcgcggggtaaaggaaaagagattcttcgcttacgctctgaatgacaaattaatggttaattgt.......................................................................................................................................................................................................................................................... HSP 3 e-value: 3.0E-19 bit: 97.6 Len: 61 Query Start:259 Query End:319 Subject Strand: NEGATIVE Subject Start: 303 Subject End: 363 ..................................................................................................................................................................................................................................................................ttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcag............................................................................................................................ ..................................................................................................................................................................................................................................................................ttcaaaggggggaagagcgaagcgaaggggggatgttaccccttcaaaggggggaatgcag............................................................................................................................ HSP 4 e-value: 1.0E-18 bit: 95.6 Len: 91 Query Start:28 Query End:118 Subject Strand: NEGATIVE Subject Start: 130 Subject End: 221 ...........................gggttatccgaacgcaaatttcgcaaataa-cgcgaatcaacgcaaataactgtgtttgtcattacgaacgccaccctttgtcattccgaac..................................................................................................................................................................................................................................................................................................................................... ...........................gggttatccgaacgcaaatttcgcaaatgggcgcgaatcaacgcaaataacagtctttgtcattccgaacacctcctcttgtcattccgaac..................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2914_TF2915|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3109704,3110561]|858 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 101 Query Start:92 Query End:192 Subject Strand: NEGATIVE Subject Start: 202 Subject End: 302 ...........................................................................................cgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattg........................................................................................................................................................................................................................................................... ...........................................................................................cgaacgtcaccctttgtcattccgaacaccgtgaggaatctcgcctcgaaaagggaaaagattcttcgcttcgctctgaatgacaaattaatggttaattg........................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-8 bit: 60.0 Len: 50 Query Start:329 Query End:378 Subject Strand: NEGATIVE Subject Start: 414 Subject End: 462 ........................................................................................................................................................................................................................................................................................................................................tgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatg................................................................. ........................................................................................................................................................................................................................................................................................................................................tgctgaccgctgtaaaagccctgaaagggc-acgttaattcagcccaatg................................................................. HSP 3 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:185 Query End:233 Subject Strand: NEGATIVE Subject Start: 297 Subject End: 345 ........................................................................................................................................................................................gttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacg.................................................................................................................................................................................................................. ........................................................................................................................................................................................gttaattgtcaatggttaatggttatgccgggtacacggaatccgaacg.................................................................................................................................................................................................................. HSP 4 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:101 Query End:135 Subject Strand: NEGATIVE Subject Start: 547 Subject End: 581 ....................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgc.................................................................................................................................................................................................................................................................................................................... ....................................................................................................ccctttgtcattccgaacgaagtaaggaatctcgc.................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2500_TF2501|ABC transporter, ATP-binding protein:DNA mismatch repair protein|POSITIVE:POSITIVE|[2675363,2676419]|1057 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 96 Query Start:149 Query End:244 Subject Strand: POSITIVE Subject Start: 720 Subject End: 816 ....................................................................................................................................................gagattcttcgctt-cgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcagagggacat....................................................................................................................................................................................................... ....................................................................................................................................................gagattcttcgcttacgctctgaatgacatattaatggttaattgtcaattgtcaattgttatgccgggtacacggtatccgaacgcagagggacat....................................................................................................................................................................................................... HSP 2 e-value: 8.0E-17 bit: 89.7 Len: 65 Query Start:6 Query End:70 Subject Strand: POSITIVE Subject Start: 317 Subject End: 381 .....gttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgc..................................................................................................................................................................................................................................................................................................................................................................................... .....gttaattgtcaattgttatgcgtggttatccgaacgcaaatttcgcaaatggcgcaaatcaacgc..................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 1.0E-12 bit: 75.8 Len: 54 Query Start:259 Query End:312 Subject Strand: POSITIVE Subject Start: 825 Subject End: 877 ..................................................................................................................................................................................................................................................................ttcaaagggaggaagagcgaagcgaaggggggatgttatcccttcaaaaggggg................................................................................................................................... ..................................................................................................................................................................................................................................................................ttcaaaggggggaagagcgaagcgaa-gggggatgttatcccttcaaagggggg................................................................................................................................... HSP 4 e-value: 4.0E-6 bit: 54.0 Len: 51 Query Start:329 Query End:379 Subject Strand: POSITIVE Subject Start: 196 Subject End: 245 ........................................................................................................................................................................................................................................................................................................................................tgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgc................................................................ ........................................................................................................................................................................................................................................................................................................................................tgctgaccgttgtaaaagccctgaaagggc-gcattaattcagcccaatgc................................................................ Subject: tfor_TF1838_TF1839|tRNA/rRNA methyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1988806,1989486]|681 HSP 1 e-value: 9.0E-32 bit: 139.0 Len: 121 Query Start:102 Query End:222 Subject Strand: POSITIVE Subject Start: 104 Subject End: 225 .....................................................................................................cctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacg............................................................................................................................................................................................................................. .....................................................................................................cctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacg............................................................................................................................................................................................................................. HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 37 Query Start:28 Query End:64 Subject Strand: POSITIVE Subject Start: 62 Subject End: 98 ...........................gggttatccgaacgcaaatttcgcaaataacgcgaat........................................................................................................................................................................................................................................................................................................................................................................................... ...........................gggttatccgaacgcaaatttcgcaaatggcgcgaat........................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1841_TF1842|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1992328,1992710]|383 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 115 Query Start:106 Query End:220 Subject Strand: POSITIVE Subject Start: 11 Subject End: 126 .........................................................................................................tgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtaca............................................................................................................................................................................................................................... .........................................................................................................tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggataca............................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-25 bit: 117.0 Len: 78 Query Start:101 Query End:178 Subject Strand: POSITIVE Subject Start: 279 Subject End: 357 ....................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaa......................................................................................................................................................................................................................................................................... ....................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa......................................................................................................................................................................................................................................................................... Subject: tfor_TF2922_TF2923|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[3121599,3122307]|709 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 93 Query Start:101 Query End:193 Subject Strand: NEGATIVE Subject Start: 405 Subject End: 498 ....................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgt.......................................................................................................................................................................................................................................................... ....................................................................................................ccctttgtcattccgaacgtagtgaggaatcccgtggggaagaggaaagagattcttcgcttacgctctgaatgacaaattaatggttaattgt.......................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-20 bit: 101.0 Len: 71 Query Start:147 Query End:217 Subject Strand: NEGATIVE Subject Start: 546 Subject End: 616 ..................................................................................................................................................aagagattcttcgcttcgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggt.................................................................................................................................................................................................................................. ..................................................................................................................................................aagagattcatcgcttcgcgctgaatgacaaattaatggttaattgtcaatggttaattgttatgccgggt.................................................................................................................................................................................................................................. HSP 3 e-value: 8.0E-20 bit: 99.6 Len: 62 Query Start:16 Query End:77 Subject Strand: NEGATIVE Subject Start: 500 Subject End: 561 ...............aattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataac.............................................................................................................................................................................................................................................................................................................................................................................. ...............aattgttatgccgggttatccgaacgcaaatttcgcaaatgacgcgaatggacgcaaataac.............................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2920_TF2921|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3117231,3118637]|1407 HSP 1 e-value: 9.0E-29 bit: 129.0 Len: 92 Query Start:101 Query End:192 Subject Strand: NEGATIVE Subject Start: 396 Subject End: 488 ....................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaattaatggttaattg........................................................................................................................................................................................................................................................... ....................................................................................................ccctttgtcattccgaacgcagtgaggaatcccgtgggaaagaggaaagagattcttcgcttacgctctgaatgacaaattaatggttaattg........................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-27 bit: 125.0 Len: 78 Query Start:101 Query End:178 Subject Strand: NEGATIVE Subject Start: 729 Subject End: 807 ....................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaa......................................................................................................................................................................................................................................................................... ....................................................................................................ccctttgtcattccgaacgcagtgaggaatctcacgggggaaagggaagagattcttcgcttacgctctgaatgacaaa......................................................................................................................................................................................................................................................................... HSP 3 e-value: 3.0E-19 bit: 97.6 Len: 102 Query Start:277 Query End:378 Subject Strand: NEGATIVE Subject Start: 572 Subject End: 674 ....................................................................................................................................................................................................................................................................................gaagcgaaggggggatgttatcccttcaaaagggggaatgcagggggctgactgctgaccg--ctgtaacagccctgaaagggctgtgttaattcagcccaatg................................................................. ....................................................................................................................................................................................................................................................................................gaagcgaaggggggatgttatccctttggaagggggaatgcaagggactgaaagctgaccgctctgtaacagccctgaaagggc-gcgttaattcagtccaatg................................................................. HSP 4 e-value: 1.0E-9 bit: 65.9 Len: 57 Query Start:329 Query End:385 Subject Strand: NEGATIVE Subject Start: 888 Subject End: 943 ........................................................................................................................................................................................................................................................................................................................................tgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcg.......................................................... ........................................................................................................................................................................................................................................................................................................................................tgctgaccgttgtaagagccctgaaagggc-gtattaattcagcccaatgcgcagcg.......................................................... Subject: tfor_TF2816_TF2817|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3007245,3007497]|253 HSP 1 e-value: 4.0E-28 bit: 127.0 Len: 95 Query Start:101 Query End:195 Subject Strand: POSITIVE Subject Start: 104 Subject End: 199 ....................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaag-agattcttcgcttcgctctgaatgacaaattaatggttaattgtca........................................................................................................................................................................................................................................................ ....................................................................................................ccctttgtcattccgaacacagtgaggaatcccgcgaggaaaaggaaaggagattcttcgctttgctctgaatgacaaattaattgttaattgtca........................................................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-19 bit: 97.6 Len: 77 Query Start:1 Query End:77 Subject Strand: POSITIVE Subject Start: 26 Subject End: 102 taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaataacgcgaatcaacgcaaataac.............................................................................................................................................................................................................................................................................................................................................................................. taatggtcaattgttaattgttatgcagggttatccgaacgcaaataacgcaaataacgcgaatgaaagcaaataac.............................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF0603_TF0604|glycosyltransferase:hypothetical protein|POSITIVE:POSITIVE|[634899,635524]|626 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 93 Query Start:101 Query End:193 Subject Strand: POSITIVE Subject Start: 141 Subject End: 233 ....................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgt.......................................................................................................................................................................................................................................................... ....................................................................................................ccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgt.......................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-13 bit: 77.8 Len: 67 Query Start:171 Query End:237 Subject Strand: POSITIVE Subject Start: 50 Subject End: 116 ..........................................................................................................................................................................atgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcaga.............................................................................................................................................................................................................. ..........................................................................................................................................................................atgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcaga.............................................................................................................................................................................................................. HSP 3 e-value: 5.0E-12 bit: 73.8 Len: 49 Query Start:271 Query End:319 Subject Strand: POSITIVE Subject Start: 301 Subject End: 348 ..............................................................................................................................................................................................................................................................................aagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcag............................................................................................................................ ..............................................................................................................................................................................................................................................................................aagagcgaagcaaaggggggatgttatcccttc-aaagggggaatgcag............................................................................................................................ HSP 4 e-value: 7.0E-11 bit: 69.9 Len: 47 Query Start:198 Query End:244 Subject Strand: POSITIVE Subject Start: 224 Subject End: 270 .....................................................................................................................................................................................................tgttaattgttatgccgggtacacggtatccgaacgcagagggacat....................................................................................................................................................................................................... .....................................................................................................................................................................................................tgttaattgttatgcatggtacacggtatccgaacgcagaggaacat....................................................................................................................................................................................................... Subject: tfor_TF2744_TF2745|methionyl-tRNA formyltransferase:hypothetical protein|POSITIVE:POSITIVE|[2927439,2927701]|263 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 103 Query Start:87 Query End:189 Subject Strand: POSITIVE Subject Start: 161 Subject End: 263 ......................................................................................cattacgaacgccaccctttgtcattccgaacgcagtgaggaatctcgcgg-ggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaa.............................................................................................................................................................................................................................................................. ......................................................................................cattacgaacgccgcc-tttgtcattccgaacaccgtgaggaatctcgccccggaaaaggagagagattcatcgcttcgctctgaatgacaaattaatggttaa.............................................................................................................................................................................................................................................................. Subject: tfor_TF1588_TF1589|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[1702621,1703328]|708 HSP 1 e-value: 8.0E-23 bit: 109.0 Len: 97 Query Start:82 Query End:178 Subject Strand: NEGATIVE Subject Start: 482 Subject End: 580 .................................................................................tttgtcattacgaacgccacc-ctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaa......................................................................................................................................................................................................................................................................... .................................................................................tttgtcattccgaacgtctcctctttgtcattccgaacgcagtgaggaatctcgtgaggaaaaggaaaaagattcttcgcttacgctctgaatgacaaa......................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-19 bit: 97.6 Len: 73 Query Start:322 Query End:394 Subject Strand: NEGATIVE Subject Start: 331 Subject End: 402 .................................................................................................................................................................................................................................................................................................................................ggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaa................................................. .................................................................................................................................................................................................................................................................................................................................ggctgaatgctgactgctgtaagagccctgaaagggc-gtgttaattcagcccaatgcgcagcgttggggaaa................................................. HSP 3 e-value: 8.0E-17 bit: 89.7 Len: 77 Query Start:101 Query End:177 Subject Strand: NEGATIVE Subject Start: 199 Subject End: 274 ....................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaa.......................................................................................................................................................................................................................................................................... ....................................................................................................ccctttgtcattccgaacgcagtgaggaatcccgccccgaaaa-ggaaaagattcatcgcttcgctctgaatgacaa.......................................................................................................................................................................................................................................................................... Subject: tfor_TF2640_TF2641|hypothetical protein:riboflavin kinase/FAD synthase|POSITIVE:POSITIVE|[2809594,2809820]|227 HSP 1 e-value: 7.0E-14 bit: 79.8 Len: 64 Query Start:331 Query End:394 Subject Strand: NEGATIVE Subject Start: 131 Subject End: 193 ..........................................................................................................................................................................................................................................................................................................................................ctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaa................................................. ..........................................................................................................................................................................................................................................................................................................................................ctgaccgctgtaaaagccctgaaagggc-gcattaattcagtccaatgcgaagcgttggggaaa................................................. HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 35 Query Start:101 Query End:135 Subject Strand: NEGATIVE Subject Start: 40 Subject End: 74 ....................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgc.................................................................................................................................................................................................................................................................................................................... ....................................................................................................ccctttgtcattccgaacgtagtgaggaatctcgc.................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0827_TF0828|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[886980,887229]|250 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 100 Query Start:337 Query End:436 Subject Strand: POSITIVE Subject Start: 135 Subject End: 235 ................................................................................................................................................................................................................................................................................................................................................gctgtaacagccctgaaagggctgtgttaattcagcccaatgcgaagcgttggggaaagag--gtaacacccatgggagggctgaaagcctgaattaattca....... ................................................................................................................................................................................................................................................................................................................................................gctgtaaaagccctgaaagggc-gtaataattcagcccaatgcgaagcgttggggaaaaagcaatatccccgttgggagggctgaaagcctgacgtaattca....... Subject: tfor_TF2815_TF2816|meso-diaminopimelate D-dehydrogenase:hypothetical protein|POSITIVE:POSITIVE|[3006481,3007064]|584 HSP 1 e-value: 5.0E-12 bit: 73.8 Len: 81 Query Start:298 Query End:378 Subject Strand: NEGATIVE Subject Start: 258 Subject End: 336 .........................................................................................................................................................................................................................................................................................................cccttcaaaagggggaatgcagggggctgactgctgaccgctgtaacagccctgaaagggctgtgttaattcagcccaatg................................................................. .........................................................................................................................................................................................................................................................................................................cccttcaaaagggggaatgca-ggggctgaacgctgactgctttaaaagccctgaaagggc-gcattaattcagcccaatg................................................................. HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 55 Query Start:1 Query End:55 Subject Strand: POSITIVE Subject Start: 495 Subject End: 549 taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaat.................................................................................................................................................................................................................................................................................................................................................................................................... taatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaat.................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2996_TF2997|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3211182,3211547]|366 HSP 1 e-value: 7.0E-11 bit: 69.9 Len: 59 Query Start:164 Query End:222 Subject Strand: NEGATIVE Subject Start: 228 Subject End: 286 ...................................................................................................................................................................gctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacg............................................................................................................................................................................................................................. ...................................................................................................................................................................gctctgaatgacaaattaattgttaattgtcaatggttaattgttatgcgtggtacacg............................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 33 Query Start:23 Query End:55 Subject Strand: NEGATIVE Subject Start: 43 Subject End: 75 ......................atgccgggttatccgaacgcaaatttcgcaaat.................................................................................................................................................................................................................................................................................................................................................................................................... ......................atgccgggttatccgaacgcaaatttcgcaaat.................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUGGUUAAUUGUCAAUUGUUAUGCCGGGUUAUCCGAACGCAAAUUUCGCAAAUAACGCGAAUCAACGCAAAUAACUGUGUUUGUCAUUACGAACGCCACCCUUUGUCAUUCCGAACGCAGUGAGGAAUCUCGCGGGGAAAAGGGAAGAGAUUCUUCGCUUCGCUCUGAAUGACAAAUUAAUGGUUAAUUGUCAGGUGUUAAUUGUUAUGCCGGGUACACGGUAUCCGAACGCAGAGGGACAUCCCCCCUCCCCCCCUUCAAAGGGAGGAAGAGCGAAGCGAAGGGGGGAUGUUAUCCCUUCAAAAGGGGGAAUGCAGGGGGCUGACUGCUGACCGCUGUAACAGCCCUGAAAGGGCUGUGUUAAUUCAGCCCAAUGCGAAGCGUUGGGGAAAGAGGUAACACCCAUGGGAGGGCUGAAAGCCUGAAUUAAUUCAGCGAUCA ..(..((((((..(.....(((((..(((.....)))...((....(((((.......))))).....))..))))).((((((((....)))))))).....((((((((((.((.((.(((((((((((((...............))))))))))))).)).)).))))))))))...)..))))))..)..(((((((......((((((......))))))((.(((((.....((((((((((((.((.((((....)))).))....((...))..)))))))))))).((((((.....))))))..(((..(((((((..((.....))....(((((((.....)))))))......)))))))..)))...))))).))........))))))).....((..((((((............))))))..)). (-166.16) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUCGCUGAAUUAAUUCAGGCUUUCAGCCCUCCCAUGGGUGUUACCUCUUUCCCCAACGCUUCGCAUUGGGCUGAAUUAACACAGCCCUUUCAGGGCUGUUACAGCGGUCAGCAGUCAGCCCCCUGCAUUCCCCCUUUUGAAGGGAUAACAUCCCCCCUUCGCUUCGCUCUUCCUCCCUUUGAAGGGGGGGAGGGGGGAUGUCCCUCUGCGUUCGGAUACCGUGUACCCGGCAUAACAAUUAACACCUGACAAUUAACCAUUAAUUUGUCAUUCAGAGCGAAGCGAAGAAUCUCUUCCCUUUUCCCCGCGAGAUUCCUCACUGCGUUCGGAAUGACAAAGGGUGGCGUUCGUAAUGACAAACACAGUUAUUUGCGUUGAUUCGCGUUAUUUGCGAAAUUUGCGUUCGGAUAACCCGGCAUAACAAUUGACAAUUAACCAUUA .....((((.......(((........(((..(((..((((((((........((.(((((...(((..(((((((......(((((((.....)))))))....((.....))..)))))))..)))..............(((((...(((((((((...((...))...((((((((.....))))))))))))))))))))))..))))).))...(((......))).........))))))))................((((((((((.(((((.((.((.(((((((...............))))))).)).)).))))).))))))))))))).)))........)))........(((((((((((.((((((((.....)))).)))).))))..))))))).))))........................ (-155.15) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 954 300 253 63 15 tfor:TF1167|5end_hypothetical_protein_1248559..1248789_POSITIVE 945 170 122 166 118 tfor:TF2668|5end_hypothetical_protein_2842471..2842701_POSITIVE 945 170 122 90 42 tfor:TF2667|5end_hypothetical_protein_2842395..2842625_POSITIVE 902 170 121 225 175 tfor:TF2922|5end_surface_antigen_BspA_3119122..3119352_POSITIVE 897 139 91 91 44 tfor:TF2653|5end_hypothetical_protein_2822093..2822323_POSITIVE 892 400 351 219 171 tfor:TF0340|5end_hypothetical_protein_363893..364123_POSITIVE 886 390 345 209 165 tfor:TF0346|5end_hypothetical_protein_367048..367278_POSITIVE 878 160 111 179 129 tfor:TF1579|5end_hypothetical_protein_1686889..1687119_POSITIVE 876 170 122 94 45 tfor:TF0470|5end_hypothetical_protein_487253..487483_POSITIVE 875 330 283 67 17 tfor:TF2350|5end_hypothetical_protein_2515063..2515293_POSITIVE 863 170 122 203 155 tfor:TF2669|5end_possible_Fe-S_oxidoreductase_2842971..2843201_POSITIVE 863 170 122 166 118 tfor:TF2665|5end_hypothetical_protein_2841973..2842203_POSITIVE 858 300 254 149 101 tfor:TF0471|5end_conserved_hypothetical_protein_487516..487746_POSITIVE 855 170 122 84 35 tfor:TF2994|5end_hypothetical_protein_3210605..3210835_POSITIVE 842 170 122 160 113 tfor:TF0017|5end_hypothetical_protein_10504..10734_POSITIVE 838 390 345 231 187 tfor:TF2351|5end_acetate_kinase_2515480..2515710_POSITIVE 783 390 345 120 76 tfor:TF1274|5end_hypothetical_protein_1357621..1357851_POSITIVE 783 260 213 201 154 tfor:TF0685|5end_hypothetical_protein_730852..731082_POSITIVE 776 400 355 219 175 tfor:TF2166|5end_hypothetical_protein_2342115..2342345_POSITIVE 770 289 247 50 1 tfor:TF2640|5end_hypothetical_protein_2809106..2809336_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 893 170 121 71 22 tfor:TF2652|3end_hypothetical_protein_2822122..2822272_POSITIVE 867 390 346 44 1 tfor:TF0344|3end_hypothetical_protein_366963..367113_POSITIVE 858 300 254 71 23 tfor:TF0470|3end_hypothetical_protein_487518..487668_POSITIVE 846 390 346 44 1 tfor:TF1585|3end_hypothetical_protein_1690610..1690760_POSITIVE 843 319 275 45 1 tfor:TF1166|3end_ABC_transporter,_permease_component_1248603..1248753_POSITIVE 838 390 345 121 77 tfor:TF1592|3end_hypothetical_protein_1708557..1708707_POSITIVE 837 170 122 151 102 tfor:TF0017|3end_hypothetical_protein_11231..11381_POSITIVE 818 390 345 121 77 tfor:TF1590|3end_hypothetical_protein_1706043..1706193_POSITIVE 807 390 342 114 67 tfor:TF2025|3end_hypothetical_protein_2182180..2182330_POSITIVE 806 250 201 151 102 tfor:TF2639|3end_hypothetical_protein_2809333..2809483_POSITIVE 801 70 21 137 88 tfor:TF0018|3end_hypothetical_protein_12091..12241_POSITIVE 796 319 271 61 14 tfor:TF0685|3end_hypothetical_protein_731132..731282_POSITIVE 782 70 21 94 39 tfor:TF1761|3end_hypothetical_protein_1899579..1899729_POSITIVE 782 160 111 147 99 tfor:TF0016|3end_hypothetical_protein_10581..10731_POSITIVE 777 170 121 58 10 tfor:TF2997|3end_hypothetical_protein_3211664..3211814_POSITIVE 769 380 331 142 94 tfor:TF1588|3end_hypothetical_protein_1702560..1702710_POSITIVE 767 150 102 149 98 tfor:TF2350|3end_hypothetical_protein_2515364..2515514_POSITIVE 748 260 215 65 8 tfor:TF2651|3end_hypothetical_protein_2822014..2822164_POSITIVE 747 400 353 47 1 tfor:TF1584|3end_hypothetical_protein_1690603..1690753_POSITIVE 733 278 234 51 1 tfor:TF1169|3end_lipoprotein_ABC_transporter,_permease_component_1251573..1251723_POSITIVE