Origin IGS:
ttcttcatcggatggtttttatttcgggcttcaaaagtattctttttttgaacattctccaagctttcgagcgaaaaatatgtatttccatcttgatgacatttttttgccgcgaggtatccggttaggcaggcttattcggaagaaaagggcaaatcttccgaacgcttcggcgttcgtccttgggcctcgggcggtgagccgacggccctcttatcggggtacatcctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagcccctgcattcccccttttgaaggggggctggagggatgtccatattcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaacgga
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
tccgttcggaatgacaaaggggggtattcgcgtccatttgcgagattcgcgttcggataaccctgcataacaattaacaattgaccattaacaattgaattatgtcaggctttcagccctctgaacaaggtctgggaatcgatatcccacccttacgggatggggctgaaatatatcgggctttcagcccttgtgccctgtgcgggctaatctcttcggggcgttgaatatggacatccctccagccccccttcaaaagggggaatgcaggggctgaacgctgactgctttaaaagccctgaaagggcgcattaattcagcccaatgtggagcgaagcgaagcgttgggaaaacaggatgtaccccgataagagggccgtcggctcaccgcccgaggcccaaggacgaacgccgaagcgttcggaagatttgcccttttcttccgaataagcctgcctaaccggatacctcgcggcaaaaaaatgtcatcaagatggaaatacatatttttcgctcgaaagcttggagaatgttcaaaaaaagaatacttttgaagcccgaaataaaaaccatccgatgaagaa

Mask Tandem Repeat Region ================================================
ttcttcatcggatggtttttatttcgggcttcaaaagtattctttttttgaacattctccaagctttcgagcgaaaaatatgtatttccatcttgatgacatttttttgccgcgaggtatccggttaggcaggcttattcggaagaaaagggcaaatcttccgaacgcttcggcgttcgtccttgggcctcgggcggtgagccgacggccctcttatcggggtacatcctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagcccctgcattcccccttttgaaggggggctggagggatgtccatattcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaacgga

Find is-nt database================================================
Query_seq: TF2815:TF2816|TF2815:TF2816:meso-diaminopimelate D-dehydrogenase:hypothetical protein:->->:3006481..3007064 584
ttcttcatcggatggtttttatttcgggcttcaaaagtattctttttttgaacattctccaagctttcgagcgaaaaatatgtatttccatcttgatgacatttttttgccgcgaggtatccggttaggcaggcttattcggaagaaaagggcaaatcttccgaacgcttcggcgttcgtccttgggcctcgggcggtgagccgacggccctcttatcggggtacatcctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagcccctgcattcccccttttgaaggggggctggagggatgtccatattcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaacgga
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: TF2815:TF2816|TF2815:TF2816:meso-diaminopimelate D-dehydrogenase:hypothetical protein:->->:3006481..3007064 584
ttcttcatcggatggtttttatttcgggcttcaaaagtattctttttttgaacattctccaagctttcgagcgaaaaatatgtatttccatcttgatgacatttttttgccgcgaggtatccggttaggcaggcttattcggaagaaaagggcaaatcttccgaacgcttcggcgttcgtccttgggcctcgggcggtgagccgacggccctcttatcggggtacatcctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagcccctgcattcccccttttgaaggggggctggagggatgtccatattcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaacgga
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: TF2815:TF2816|TF2815:TF2816:meso-diaminopimelate D-dehydrogenase:hypothetical protein:->->:3006481..3007064 584
ttcttcatcggatggtttttatttcgggcttcaaaagtattctttttttgaacattctccaagctttcgagcgaaaaatatgtatttccatcttgatgacatttttttgccgcgaggtatccggttaggcaggcttattcggaagaaaagggcaaatcttccgaacgcttcggcgttcgtccttgggcctcgggcggtgagccgacggccctcttatcggggtacatcctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagcccctgcattcccccttttgaaggggggctggagggatgtccatattcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaacgga
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

ttcttcatcggatggtttttatttcgggcttcaaaagtattctttttttgaacattctccaagctttcgagcgaaaaatatgtatttccatcttgatgacatttttttgccgcgaggtatccggttaggcaggcttattcggaagaaaagggcaaatcttccgaacgcttcggcgttcgtccttgggcctcgggcggtgagccgacggccctcttatcggggtacatcctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagcccctgcattcccccttttgaaggggggctggagggatgtccatattcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaacgga
Predict ORF larger than 30AA ================================================
Protein_Len: 38	Strand: +	Start: 12	End: 125
........... M  V  F  I  S  G  F  K  S  I  L  F  L  N  I  L  Q  A  F  E  R  K  I  C  I  S  I  L  M  T  F  F  C  R  E  V  S  G ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 80	End: 265
............................................................................... M  Y  F  H  L  D  D  I  F  L  P  R  G  I  R  L  G  R  L  I  R  K  K  R  A  N  L  P  N  A  S  A  F  V  L  G  P  R  A  V  S  R  R  P  S  Y  R  G  T  S  C  F  P  N  A  S  L  R  S  T ...............................................................................................................................................................................................................................................................................................................................
Protein_Len: 38	Strand: +	Start: 216	End: 329
....................................................................................................................................................................................................................... M  G  V  H  P  V  F  P  T  L  R  F  A  P  H  W  A  E  L  M  R  P  F  R  A  F  K  A  V  S  V  Q  P  L  H  S  P  F ...............................................................................................................................................................................................................................................................
Protein_Len: 47	Strand: +	Start: 329	End: 469
........................................................................................................................................................................................................................................................................................................................................ M  K  G  G  W  R  D  V  H  I  Q  R  P  E  E  I  S  P  H  R  A  Q  G  L  K  A  R  Y  I  S  A  P  S  R  K  G  G  I  S  I  P  R  P  C  S  E  G ...................................................................................................................
Protein_Len: 31	Strand: +	Start: 490	End: 582
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M  V  N  G  Q  L  L  I  V  M  Q  G  Y  P  N  A  N  L  A  N  G  R  E  Y  P  P  L  S  F  R  T ..
Protein_Len: 38	Strand: -	Start: 378	End: 491
......................................................................................................................................................................................................................................................................................................................................................................................... G  A  C  P  V  L  A  S  L  G  I  Y  K  L  G  M  G  Y  P  H  S  I  S  E  W  V  K  N  L  P  S  F  A  Q  C  L  E  M .............................................................................................
Protein_Len: 42	Strand: -	Start: 361	End: 486
........................................................................................................................................................................................................................................................................................................................................................................ R  G  S  S  I  L  G  C  L  A  C  P  S  F  A  R  Y  I  E  A  G  D  R  L  P  P  I  D  I  G  L  G  Q  E  S  P  Q  F  G  S  M  M ..................................................................................................
Protein_Len: 34	Strand: -	Start: 311	End: 412
...................................................................................................................................................................................................................................................................................................................... G  R  C  E  G  K  Q  L  P  A  P  P  I  D  M  N  L  A  G  F  L  N  A  R  V  P  C  L  P  Q  F  G  S  M ............................................................................................................................................................................
Protein_Len: 41	Strand: -	Start: 138	End: 260
......................................................................................................................................... E  S  S  F  P  L  D  E  S  R  K  P  T  R  G  Q  A  E  P  P  S  G  V  A  R  K  D  P  Y  M  R  N  E  W  R  K  A  E  S  W  M ....................................................................................................................................................................................................................................................................................................................................
Protein_Len: 59	Strand: -	Start: 128	End: 304
............................................................................................................................... A  P  K  N  P  L  F  P  C  I  K  R  V  S  R  R  E  D  K  P  R  P  R  H  A  S  P  G  R  I  P  T  C  G  T  K  G  V  S  R  K  A  G  C  Q  A  S  N  I  R  G  K  L  A  K  L  A  T  M ........................................................................................................................................................................................................................................................................................
Protein_Len: 35	Strand: -	Start: 34	End: 138
................................. F  Y  E  K  K  S  C  E  G  L  K  R  A  F  F  I  Y  K  W  R  S  S  M  K  K  G  R  P  I  R  N  P  L  S  M ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 30	Strand: -	Start: 8	End: 97
....... R  I  T  K  I  E  P  K  L  L  I  R  K  K  F  M  R  W  A  K  S  R  F  I  H  I  E  M  K  M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

ttcttcatcggatggtttttatttcgggcttcaaaagtattctttttttgaacattctccaagctttcgagcgaaaaatatgtatttccatcttgatgacatttttttgccgcgaggtatccggttaggcaggcttattcggaagaaaagggcaaatcttccgaacgcttcggcgttcgtccttgggcctcgggcggtgagccgacggccctcttatcggggtacatcctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagcccctgcattcccccttttgaaggggggctggagggatgtccatattcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaacgga
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

ttcttcatcggatggtttttatttcgggcttcaaaagtattctttttttgaacattctccaagctttcgagcgaaaaatatgtatttccatcttgatgacatttttttgccgcgaggtatccggttaggcaggcttattcggaagaaaagggcaaatcttccgaacgcttcggcgttcgtccttgggcctcgggcggtgagccgacggccctcttatcggggtacatcctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagcccctgcattcccccttttgaaggggggctggagggatgtccatattcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaacgga
Predict TransTerm conf > 70================================================
TransTerm Strand: +	Conf: 71	HP_score: -11.3	Tail_Score: -2.72344	Start: 162	End: 179	Full_Region: AAAGGGCAAATCTTC CGAACGC TTCG GCGTTCG TCCTTGGGCCTCGGG
.................................................................................................................................................................CGAACGCTTCGGCGTTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................
TransTerm Strand: +	Conf: 77	HP_score: -9.1	Tail_Score: -4.08767	Start: 277	End: 289	Full_Region: GGGCTGAATTAATGC GCCCT TTC AGGGC TTTTAAAGCAGTCAG
....................................................................................................................................................................................................................................................................................GCCCTTTCAGGGC.......................................................................................................................................................................................................................................................................................................
TransTerm Strand: +	Conf: 47	HP_score: -2.2	Tail_Score: -3.58208	Start: 488	End: 507	Full_Region: AAGCCTGACATAATT CAATTG TTAATGGT CAATTG TTAATTGTTATGCAG
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGTTAATGGTCAATTG.............................................................................

Find igs database================================================
Query_seq: TF2815:TF2816|TF2815:TF2816:meso-diaminopimelate D-dehydrogenase:hypothetical protein:->->:3006481..3007064 584
ttcttcatcggatggtttttatttcgggcttcaaaagtattctttttttgaacattctccaagctttcgagcgaaaaatatgtatttccatcttgatgacatttttttgccgcgaggtatccggttaggcaggcttattcggaagaaaagggcaaatcttccgaacgcttcggcgttcgtccttgggcctcgggcggtgagccgacggccctcttatcggggtacatcctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagcccctgcattcccccttttgaaggggggctggagggatgtccatattcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaacgga
Intra-Species Hit: Count: 20	Min: 1	Max: 584	Len: 584
Subject: tfor_TF2815_TF2816|meso-diaminopimelate D-dehydrogenase:hypothetical protein|POSITIVE:POSITIVE|[3006481,3007064]|584
HSP  1	e-value: 0.0	bit: 1074.0	Len: 584	Query Start:1	Query End:584	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 584
ttcttcatcggatggtttttatttcgggcttcaaaagtattcnnnnnnngaacattctccaagctttcgagcgaaaaatatgtatttccatcttgatgacannnnnnngccgcgaggtatccggttaggcaggcttattcggaagaaaagggcaaatcttccgaacgcttcggcgttcgtccttgggcctcgggcggtgagccgacggccctcttatcggggtacatcctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagcccctgcattcccccttttgaaggggggctggagggatgtccatattcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaacgga
ttcttcatcggatggtttttatttcgggcttcaaaagtattctttttttgaacattctccaagctttcgagcgaaaaatatgtatttccatcttgatgacatttttttgccgcgaggtatccggttaggcaggcttattcggaagaaaagggcaaatcttccgaacgcttcggcgttcgtccttgggcctcgggcggtgagccgacggccctcttatcggggtacatcctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagcccctgcattcccccttttgaaggggggctggagggatgtccatattcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaacgga

Subject: tfor_TF2438_TF2439|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2616218,2616519]|302
HSP  1	e-value: 2.0E-33	bit: 145.0	Len: 85	Query Start:228	Query End:312	Subject Strand: POSITIVE	Subject Start: 149	Subject End: 233
...................................................................................................................................................................................................................................cctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagc................................................................................................................................................................................................................................................................................
...................................................................................................................................................................................................................................cctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagc................................................................................................................................................................................................................................................................................
HSP  2	e-value: 2.0E-8	bit: 61.9	Len: 35	Query Start:464	Query End:498	Subject Strand: NEGATIVE	Subject Start: 100	Subject End: 134
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacataattcaattgttaat......................................................................................
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacataatttaattgttaat......................................................................................

Subject: tfor_TF2920_TF2921|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3117231,3118637]|1407
HSP  1	e-value: 1.0E-31	bit: 139.0	Len: 130	Query Start:358	Query End:487	Subject Strand: POSITIVE	Subject Start: 990	Subject End: 1119
.....................................................................................................................................................................................................................................................................................................................................................................tcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataatt.................................................................................................
.....................................................................................................................................................................................................................................................................................................................................................................tcaacgccccgaaggggttagctcgcccgaggcccaagggctgaaagcccggtatatttcagccccatcccgtaaggatggggtatcgattccccgaccccgttgggagggctgaaagcctgacataatt.................................................................................................
HSP  2	e-value: 2.0E-18	bit: 95.6	Len: 96	Query Start:233	Query End:328	Subject Strand: POSITIVE	Subject Start: 547	Subject End: 645
........................................................................................................................................................................................................................................tttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggctttt--aaagcagtcagcgttcag-cccctgcattccccctt................................................................................................................................................................................................................................................................
........................................................................................................................................................................................................................................tttcccaacgcttcgcttcgctgcacattggactgaattaacgcgccctttcagggctgttacagagcggtcagctttcagtcccttgcattccccctt................................................................................................................................................................................................................................................................
HSP  3	e-value: 2.0E-15	bit: 85.7	Len: 59	Query Start:232	Query End:290	Subject Strand: POSITIVE	Subject Start: 869	Subject End: 927
.......................................................................................................................................................................................................................................ttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggct......................................................................................................................................................................................................................................................................................................
.......................................................................................................................................................................................................................................tttttccaacgcttcgcttcgctgcgcattgggctgaattaatacgccctttcagggct......................................................................................................................................................................................................................................................................................................

Subject: tfor_TF1585_TF1586|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1690671,1691110]|440
HSP  1	e-value: 3.0E-29	bit: 131.0	Len: 106	Query Start:381	Query End:486	Subject Strand: POSITIVE	Subject Start: 186	Subject End: 291
............................................................................................................................................................................................................................................................................................................................................................................................cgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataat..................................................................................................
............................................................................................................................................................................................................................................................................................................................................................................................cgcacggggcacaagggctgcaagcccgatatatttcagccccatcccgcaagggtggggtatcgattcccataccccgtttggagggctgaaagcctgatataat..................................................................................................

Subject: tfor_TF2500_TF2501|ABC transporter, ATP-binding protein:DNA mismatch repair protein|POSITIVE:POSITIVE|[2675363,2676419]|1057
HSP  1	e-value: 5.0E-25	bit: 117.0	Len: 67	Query Start:228	Query End:294	Subject Strand: NEGATIVE	Subject Start: 208	Subject End: 274
...................................................................................................................................................................................................................................cctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggctttta..................................................................................................................................................................................................................................................................................................
...................................................................................................................................................................................................................................cctgttttcccaacgcttcgcttcgctctgcattgggctgaattaatgcgccctttcagggctttta..................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 2.0E-8	bit: 61.9	Len: 47	Query Start:464	Query End:510	Subject Strand: POSITIVE	Subject Start: 288	Subject End: 334
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacataattcaattgttaatggtcaattgtta..........................................................................
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggatgaaagcctgacgtaattcagttgttaattgtcaattgtta..........................................................................

Subject: tfor_TF0018_TF0019|hypothetical protein:heat shock protein ClpB|POSITIVE:POSITIVE|[12152,12589]|438
HSP  1	e-value: 5.0E-25	bit: 117.0	Len: 59	Query Start:232	Query End:290	Subject Strand: POSITIVE	Subject Start: 75	Subject End: 133
.......................................................................................................................................................................................................................................ttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggct......................................................................................................................................................................................................................................................................................................
.......................................................................................................................................................................................................................................ttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggct......................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 2.0E-12	bit: 75.8	Len: 54	Query Start:464	Query End:517	Subject Strand: NEGATIVE	Subject Start: 1	Subject End: 54
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgtta...................................................................
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacgtaattcagttgttaatggtcaatggttaatggtta...................................................................

Subject: tfor_TF1762_TF1763|hypothetical protein:K+-dependent Na+/Ca+ exchanger related-protein|POSITIVE:POSITIVE|[1899709,1900545]|837
HSP  1	e-value: 1.0E-22	bit: 109.0	Len: 63	Query Start:232	Query End:294	Subject Strand: POSITIVE	Subject Start: 50	Subject End: 112
.......................................................................................................................................................................................................................................ttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggctttta..................................................................................................................................................................................................................................................................................................
.......................................................................................................................................................................................................................................ttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggctttta..................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-19	bit: 99.6	Len: 90	Query Start:358	Query End:447	Subject Strand: POSITIVE	Subject Start: 196	Subject End: 285
.....................................................................................................................................................................................................................................................................................................................................................................tcaacgccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgat.........................................................................................................................................
.....................................................................................................................................................................................................................................................................................................................................................................tcaacgccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgat.........................................................................................................................................

Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146
HSP  1	e-value: 1.0E-22	bit: 109.0	Len: 59	Query Start:232	Query End:290	Subject Strand: POSITIVE	Subject Start: 806	Subject End: 864
.......................................................................................................................................................................................................................................ttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggct......................................................................................................................................................................................................................................................................................................
.......................................................................................................................................................................................................................................ttttcccaacgcttcgctgcgctccacattgggctgaattaatgcgccctttcagggct......................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 3.0E-14	bit: 81.8	Len: 57	Query Start:464	Query End:520	Subject Strand: NEGATIVE	Subject Start: 730	Subject End: 786
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgc................................................................
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgtaagcctgacgtaattcaattgttaatggttaattgtcaattgttatgc................................................................
HSP  3	e-value: 6.0E-6	bit: 54.0	Len: 27	Query Start:182	Query End:208	Subject Strand: NEGATIVE	Subject Start: 355	Subject End: 381
.....................................................................................................................................................................................cttgggcctcgggcggtgagccgacgg........................................................................................................................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................cttgggcctcgggcggtgagccgacgg........................................................................................................................................................................................................................................................................................................................................................................................
HSP  4	e-value: 6.0E-6	bit: 54.0	Len: 27	Query Start:494	Query End:520	Subject Strand: NEGATIVE	Subject Start: 527	Subject End: 553
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaatggtcaattgttaattgttatgc................................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaatggtcaattgttaattgttatgc................................................................

Subject: tfor_TF2998_TF2999|surface antigen BspA:conserved hypothetical protein|POSITIVE:POSITIVE|[3215212,3215705]|494
HSP  1	e-value: 1.0E-19	bit: 99.6	Len: 78	Query Start:228	Query End:305	Subject Strand: POSITIVE	Subject Start: 241	Subject End: 318
...................................................................................................................................................................................................................................cctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagc.......................................................................................................................................................................................................................................................................................
...................................................................................................................................................................................................................................cctgttttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctcttacagctgtcagc.......................................................................................................................................................................................................................................................................................
HSP  2	e-value: 4.0E-16	bit: 87.7	Len: 56	Query Start:464	Query End:519	Subject Strand: NEGATIVE	Subject Start: 170	Subject End: 225
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatg.................................................................
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacataattcaatggttaatggttaattgtcaattgttatg.................................................................

Subject: tfor_TF0029_TF0030|hypothetical protein:N-acetylneuraminate lyase|POSITIVE:POSITIVE|[25123,25909]|787
HSP  1	e-value: 2.0E-18	bit: 95.6	Len: 96	Query Start:391	Query End:486	Subject Strand: NEGATIVE	Subject Start: 167	Subject End: 262
......................................................................................................................................................................................................................................................................................................................................................................................................acaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgttcagagggctgaaagcctgacataat..................................................................................................
......................................................................................................................................................................................................................................................................................................................................................................................................acaagggctggaagcccgaattatttcagccccatcccgtaagggtgggggatccatgcccataccttggttagagggctgtaagcctgatataat..................................................................................................
HSP  2	e-value: 6.0E-9	bit: 63.9	Len: 48	Query Start:258	Query End:305	Subject Strand: NEGATIVE	Subject Start: 371	Subject End: 418
.................................................................................................................................................................................................................................................................cattgggctgaattaatgcgccctttcagggcttttaaagcagtcagc.......................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................................cattgggctgaattattatgccctttcagggcttttacagcagtcagc.......................................................................................................................................................................................................................................................................................

Subject: tfor_TF1848_TF1850|conserved hypothetical protein:Na+/H+-exchanging protein|POSITIVE:POSITIVE|[1998005,1998681]|677
HSP  1	e-value: 3.0E-17	bit: 91.7	Len: 62	Query Start:464	Query End:525	Subject Strand: POSITIVE	Subject Start: 154	Subject End: 215
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggt...........................................................
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacgtaattcaattgttaattgtcaatggttaattgttatgccgggt...........................................................
HSP  2	e-value: 2.0E-15	bit: 85.7	Len: 55	Query Start:236	Query End:290	Subject Strand: NEGATIVE	Subject Start: 78	Subject End: 132
...........................................................................................................................................................................................................................................cccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggct......................................................................................................................................................................................................................................................................................................
...........................................................................................................................................................................................................................................cccaacacttcgctgcgctccacattgggctgaattaacgcgccctttcagggct......................................................................................................................................................................................................................................................................................................

Subject: tfor_TF2477_TF2478|phosphatase:hypothetical protein|POSITIVE:POSITIVE|[2655026,2655514]|489
HSP  1	e-value: 4.0E-16	bit: 87.7	Len: 84	Query Start:378	Query End:461	Subject Strand: NEGATIVE	Subject Start: 215	Subject End: 298
.........................................................................................................................................................................................................................................................................................................................................................................................gcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgattcccagaccttgtt...........................................................................................................................
.........................................................................................................................................................................................................................................................................................................................................................................................gcccgcaaggggcacaaaggctgaaagtccgatctatttcagccccatcccataaggttggggtatcgatgcccataccttgtt...........................................................................................................................
HSP  2	e-value: 2.0E-11	bit: 71.9	Len: 60	Query Start:246	Query End:305	Subject Strand: NEGATIVE	Subject Start: 347	Subject End: 406
.....................................................................................................................................................................................................................................................cgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagc.......................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................................................................................cgcttcgctacgcattgggctgaattaatacgccctttcagggctgttgaagcattcagc.......................................................................................................................................................................................................................................................................................

Subject: tfor_TF0467_TF0468|acetyltransferase-related protein:hypothetical protein|POSITIVE:POSITIVE|[486604,487068]|465
HSP  1	e-value: 6.0E-15	bit: 83.8	Len: 58	Query Start:233	Query End:290	Subject Strand: POSITIVE	Subject Start: 317	Subject End: 374
........................................................................................................................................................................................................................................tttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggct......................................................................................................................................................................................................................................................................................................
........................................................................................................................................................................................................................................tttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggct......................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 6.0E-6	bit: 54.0	Len: 31	Query Start:480	Query End:510	Subject Strand: POSITIVE	Subject Start: 225	Subject End: 255
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acataattcaattgttaatggtcaattgtta..........................................................................
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acataattcaattgttaattgtcaattgtta..........................................................................

Subject: tfor_TF2914_TF2915|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3109704,3110561]|858
HSP  1	e-value: 1.0E-13	bit: 79.8	Len: 60	Query Start:246	Query End:305	Subject Strand: POSITIVE	Subject Start: 402	Subject End: 461
.....................................................................................................................................................................................................................................................cgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagc.......................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................................................................................cgcttcgctgcacattgggctgaattaacgtgccctttcagggcttttacagcggtcagc.......................................................................................................................................................................................................................................................................................
HSP  2	e-value: 2.0E-12	bit: 75.8	Len: 62	Query Start:464	Query End:525	Subject Strand: NEGATIVE	Subject Start: 313	Subject End: 374
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacataattcaattgttaatggtcaattgttaattgttatgcagggt...........................................................
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacgtaattcagttgttaattgtcaatggttaatggttatgccgggt...........................................................

Subject: tfor_TF2922_TF2923|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[3121599,3122307]|709
HSP  1	e-value: 4.0E-13	bit: 77.8	Len: 67	Query Start:493	Query End:559	Subject Strand: NEGATIVE	Subject Start: 513	Subject End: 578
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gttaatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaatggacgcgaat.........................
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gttaattgtcaatggttaattgttatgccgggttatccgaacgcaaatttcgcaaat-gacgcgaat.........................
HSP  2	e-value: 1.0E-6	bit: 56.0	Len: 40	Query Start:169	Query End:208	Subject Strand: NEGATIVE	Subject Start: 297	Subject End: 336
........................................................................................................................................................................ttcggcgttcgtccttgggcctcgggcggtgagccgacgg........................................................................................................................................................................................................................................................................................................................................................................................
........................................................................................................................................................................ttcggtgttcgtccatgggcctcgggtggtgagccgacgg........................................................................................................................................................................................................................................................................................................................................................................................

Subject: tfor_TF2823_TF2824|TPR-containing protein:nucleoside-transporting protein nupG|POSITIVE:POSITIVE|[3014398,3014840]|443
HSP  1	e-value: 6.0E-12	bit: 73.8	Len: 79	Query Start:258	Query End:336	Subject Strand: NEGATIVE	Subject Start: 298	Subject End: 378
.................................................................................................................................................................................................................................................................cattgggctgaattaatgc-gccctttcagggcttttaaagcagtcagcgttcagcccc-tgcattcccccttttgaaggg........................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................................cattgggctgaattaacacagccctttcagggctgttacagcggtcagcagtcagccccctgcattcccccttttgaaggg........................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-10	bit: 69.9	Len: 55	Query Start:495	Query End:549	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 55
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taatggtcaattgttaattgttatgcagggttatccgaacgcgaatctcgcaaat...................................
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taatggttaattgtcaattgttatgccgggttatccgaacgcaaatttcgcaaat...................................

Subject: tfor_TF1181_TF1183|methylated-DNA--[protein]-cysteine S-methyltransferase:hypothetical protein|POSITIVE:POSITIVE|[1268052,1268530]|479
HSP  1	e-value: 6.0E-12	bit: 73.8	Len: 37	Query Start:258	Query End:294	Subject Strand: NEGATIVE	Subject Start: 378	Subject End: 414
.................................................................................................................................................................................................................................................................cattgggctgaattaatgcgccctttcagggctttta..................................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................................cattgggctgaattaatgcgccctttcagggctttta..................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 4.0E-7	bit: 58.0	Len: 45	Query Start:358	Query End:402	Subject Strand: NEGATIVE	Subject Start: 219	Subject End: 263
.....................................................................................................................................................................................................................................................................................................................................................................tcaacgccccgaagagattagcccgcacagggcacaagggctgaa......................................................................................................................................................................................
.....................................................................................................................................................................................................................................................................................................................................................................tcaacgccccgaaggggttagcccgcacggagcacaagggctgaa......................................................................................................................................................................................

Subject: tfor_TF1838_TF1839|tRNA/rRNA methyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1988806,1989486]|681
HSP  1	e-value: 2.0E-11	bit: 71.9	Len: 60	Query Start:522	Query End:581	Subject Strand: POSITIVE	Subject Start: 62	Subject End: 120
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaac...
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gggttatccgaacgcaaatttcgcaaatgg-cgcgaataaccgcctttgtcattccgaac...
HSP  2	e-value: 1.0E-6	bit: 56.0	Len: 32	Query Start:176	Query End:207	Subject Strand: POSITIVE	Subject Start: 265	Subject End: 296
...............................................................................................................................................................................ttcgtccttgggcctcgggcggtgagccgacg.........................................................................................................................................................................................................................................................................................................................................................................................
...............................................................................................................................................................................ttcgtccatgggcctcgggcggtgagccgacg.........................................................................................................................................................................................................................................................................................................................................................................................

Subject: tfor_TF0358_TF0359|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[376365,377082]|718
HSP  1	e-value: 4.0E-10	bit: 67.9	Len: 38	Query Start:236	Query End:273	Subject Strand: POSITIVE	Subject Start: 359	Subject End: 396
...........................................................................................................................................................................................................................................cccaacgcttcgcttcgctccacattgggctgaattaa.......................................................................................................................................................................................................................................................................................................................
...........................................................................................................................................................................................................................................cccaacgcttcgcttcgctacacattgggctgaattaa.......................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 4.0E-10	bit: 67.9	Len: 46	Query Start:394	Query End:439	Subject Strand: POSITIVE	Subject Start: 529	Subject End: 574
.........................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgatatatttcagccccatcccgtaagggtggg.................................................................................................................................................
.........................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggg.................................................................................................................................................

Subject: tfor_TF0827_TF0828|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[886980,887229]|250
HSP  1	e-value: 6.0E-9	bit: 63.9	Len: 40	Query Start:464	Query End:503	Subject Strand: POSITIVE	Subject Start: 210	Subject End: 249
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacataattcaattgttaatggtca.................................................................................
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagggctgaaagcctgacgtaattcaattgttaattgtca.................................................................................
HSP  2	e-value: 2.0E-8	bit: 61.9	Len: 47	Query Start:258	Query End:304	Subject Strand: NEGATIVE	Subject Start: 129	Subject End: 175
.................................................................................................................................................................................................................................................................cattgggctgaattaatgcgccctttcagggcttttaaagcagtcag........................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................................cattgggctgaattattacgccctttcagggcttttacagcattcag........................................................................................................................................................................................................................................................................................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UUCUUCAUCGGAUGGUUUUUAUUUCGGGCUUCAAAAGUAUUCUUUUUUUGAACAUUCUCCAAGCUUUCGAGCGAAAAAUAUGUAUUUCCAUCUUGAUGACAUUUUUUUGCCGCGAGGUAUCCGGUUAGGCAGGCUUAUUCGGAAGAAAAGGGCAAAUCUUCCGAACGCUUCGGCGUUCGUCCUUGGGCCUCGGGCGGUGAGCCGACGGCCCUCUUAUCGGGGUACAUCCUGUUUUCCCAACGCUUCGCUUCGCUCCACAUUGGGCUGAAUUAAUGCGCCCUUUCAGGGCUUUUAAAGCAGUCAGCGUUCAGCCCCUGCAUUCCCCCUUUUGAAGGGGGGCUGGAGGGAUGUCCAUAUUCAACGCCCCGAAGAGAUUAGCCCGCACAGGGCACAAGGGCUGAAAGCCCGAUAUAUUUCAGCCCCAUCCCGUAAGGGUGGGAUAUCGAUUCCCAGACCUUGUUCAGAGGGCUGAAAGCCUGACAUAAUUCAAUUGUUAAUGGUCAAUUGUUAAUUGUUAUGCAGGGUUAUCCGAACGCGAAUCUCGCAAAUGGACGCGAAUACCCCCCUUUGUCAUUCCGAACGGA
....(((((((((((..........(((.((((((((.......)))))))).....)))..(((....)))...............))))).))))))........((((....))))((((..((((....)))).((((((((((((((..........((((((....))))))(((((((((..((((((((....))..((((((((((.(((((((((((((.(((.....)))...........(((((....((((((((.......((((.....)))).......((.....)).))))))))......(((((((.....))))))).)))))))))))...........))))))).)))....((((.....))))...)))))))...))))))....((((((((((..(((....)))(((((.......)))))...........).))))))))).((((.((((((.((((((........))))))......))))))))))....)))))..(((.....)))....))))..........)))))).)).)))))).)))) (-206.60)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UCCGUUCGGAAUGACAAAGGGGGGUAUUCGCGUCCAUUUGCGAGAUUCGCGUUCGGAUAACCCUGCAUAACAAUUAACAAUUGACCAUUAACAAUUGAAUUAUGUCAGGCUUUCAGCCCUCUGAACAAGGUCUGGGAAUCGAUAUCCCACCCUUACGGGAUGGGGCUGAAAUAUAUCGGGCUUUCAGCCCUUGUGCCCUGUGCGGGCUAAUCUCUUCGGGGCGUUGAAUAUGGACAUCCCUCCAGCCCCCCUUCAAAAGGGGGAAUGCAGGGGCUGAACGCUGACUGCUUUAAAAGCCCUGAAAGGGCGCAUUAAUUCAGCCCAAUGUGGAGCGAAGCGAAGCGUUGGGAAAACAGGAUGUACCCCGAUAAGAGGGCCGUCGGCUCACCGCCCGAGGCCCAAGGACGAACGCCGAAGCGUUCGGAAGAUUUGCCCUUUUCUUCCGAAUAAGCCUGCCUAACCGGAUACCUCGCGGCAAAAAAAUGUCAUCAAGAUGGAAAUACAUAUUUUUCGCUCGAAAGCUUGGAGAAUGUUCAAAAAAAGAAUACUUUUGAAGCCCGAAAUAAAAACCAUCCGAUGAAGAA
((((((..((.(((((.(((.((((.((((((......)))))).((((((((((......(((((((((.......((((((........))))))..))))).)))).(((((((((((((...((((..(((((.......))))).)))).)))...))))))))))..(((((((..((((((((((((((((((...(((.....)))..))))))........((((......))))..((((((.....))))))...))))))))))))..(((.(((..((((..((((.....))))...))))..)))((((((((...((...))...))))))))....))).......)))))))...(((((.(((((.....).))))))))).....)))))).))))..((((((((((..........))))))))))..)))).)))..(((((....)).)))........)))))))..))))))........(((((((.(((...((((.((((.(((((.......))))).)))).))))..(..........)...)))))))))) (-209.90)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
945	290	241	123	74	tfor:TF0538|5end_hypothetical_protein_566891..567121_POSITIVE
945	290	241	116	67	tfor:TF0539|5end_hypothetical_protein_566884..567114_POSITIVE
943	208	169	221	182	tfor:TF2667|5end_hypothetical_protein_2842395..2842625_POSITIVE
934	290	241	176	130	tfor:TF2517|5end_hypothetical_protein_2695089..2695319_POSITIVE
918	208	169	144	103	tfor:TF2664|5end_hypothetical_protein_2841399..2841629_POSITIVE
910	439	393	216	170	tfor:TF0822|5end_hypothetical_protein_880487..880717_POSITIVE
910	439	393	216	170	tfor:TF0821|5end_hypothetical_protein_879879..880109_POSITIVE
885	439	393	47	2	tfor:TF2840|5end_hypothetical_protein_3031060..3031290_POSITIVE
834	439	393	202	156	tfor:TF0678|5end_hypothetical_protein_721103..721333_POSITIVE
803	290	241	219	175	tfor:TF2478|5end_hypothetical_protein_2655375..2655605_POSITIVE
789	220	176	147	103	tfor:TF2670|5end_hypothetical_protein_2842779..2843009_POSITIVE
789	220	176	161	117	tfor:TF2666|5end_hypothetical_protein_2841818..2842048_POSITIVE
788	280	232	102	53	tfor:TF1716|5end_hypothetical_protein_1837442..1837672_POSITIVE
781	290	241	116	66	tfor:TF0679|5end_hypothetical_protein_721155..721385_POSITIVE
760	290	246	189	150	tfor:TF1183|5end_hypothetical_protein_1268391..1268621_POSITIVE
749	290	241	123	74	tfor:TF0534|5end_hypothetical_protein_559509..559739_POSITIVE
739	350	305	199	153	tfor:TF1840|5end_transposase_1990221..1990451_POSITIVE
704	299	251	208	160	tfor:TF0828|5end_hypothetical_protein_887090..887320_POSITIVE
703	330	281	231	181	tfor:TF2824|5end_nucleoside-transporting_protein_nupG_3014701..3014931_POSITIVE
689	480	431	94	45	tfor:TF2547|5end_hypothetical_protein_2730664..2730894_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
1041	208	162	102	56	tfor:TF1167|3end_hypothetical_protein_1248932..1249082_POSITIVE
1009	208	162	102	54	tfor:TF2640|3end_hypothetical_protein_2809533..2809683_POSITIVE
1005	206	162	151	107	tfor:TF2653|3end_hypothetical_protein_2822460..2822610_POSITIVE
916	208	169	102	63	tfor:TF2921|3end_hypothetical_protein_3118790..3118940_POSITIVE
916	208	169	102	63	tfor:TF2438|3end_hypothetical_protein_2616157..2616307_POSITIVE
821	208	169	142	103	tfor:TF0469|3end_hypothetical_protein_487228..487378_POSITIVE
821	208	169	102	63	tfor:TF0468|3end_hypothetical_protein_487188..487338_POSITIVE
800	290	241	82	33	tfor:TF2840|3end_hypothetical_protein_3031289..3031439_POSITIVE
777	208	161	133	71	tfor:TF0685|3end_hypothetical_protein_731132..731282_POSITIVE
749	290	241	53	4	tfor:TF0533|3end_hypothetical_protein_559519..559669_POSITIVE
705	370	321	112	56	tfor:TF2651|3end_hypothetical_protein_2822014..2822164_POSITIVE
694	350	303	93	41	tfor:TF0821|3end_hypothetical_protein_880195..880345_POSITIVE
676	335	297	116	77	tfor:TF1660|3end_hypothetical_protein_1775600..1775750_POSITIVE
670	559	514	131	87	tfor:TF0018|3end_hypothetical_protein_12091..12241_POSITIVE
663	510	464	110	64	tfor:TF1762|3end_hypothetical_protein_1899648..1899798_POSITIVE
661	305	261	130	79	tfor:TF1185|3end_hypothetical_protein_1269563..1269713_POSITIVE
651	290	246	70	31	tfor:TF1182|3end_hypothetical_protein_1268938..1269088_POSITIVE
651	290	246	61	22	tfor:TF0820|3end_hypothetical_protein_879942..880092_POSITIVE
639	350	303	114	60	tfor:TF0370|3end_hypothetical_protein_386317..386467_POSITIVE
612	350	305	72	27	tfor:TF0828|3end_hypothetical_protein_887508..887658_POSITIVE