Origin IGS: taatcaattggccgctttggtcaaagtcagaccgatctcgattttcgtcgatttttccaacaggttggggagttccttggctataagaggcttcgcatagtccggaatacttttgaccgatgccaacaggacaggcagcacattgcgtaatgccttaaccgtttccgtgtcgagatagaagcgggtagaggaaccattcgaggtataatatacgggtatcccggccttaaacagcactttgatagcagccaatttcgtagcatcaagacctttcatttccgcgaaaaccttgtctgcgtccggatgcaacaggattttgttagcgacttttgtgttgtatgtcgcataacctttggccgccatccattctttcgaatcttttttcttatatgtggcttcaatttttccatcggccgtgaacgtaacgtctttcagcccggcctgtacgagttcgttcagggtcggagtcatcatggcagtcaattgcttgaccgtaagtttgatctttcccgcctcaatcacgacattgtccggagcttcccacacgatatccatcggcatttcttttacattccatttacccgccaattcgaatggcttcttgtcgtcatttttgttacatccgctgaaaatgcccatcgtacatacgagcatacagcaatacattaaaaaactttttctcatcattcttctgtttagagttaaacttggtttttttatcgggacaaaagtactacatttgccggcaaaaaaaatcttttt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aaaaagattttttttgccggcaaatgtagtacttttgtcccgataaaaaaaccaagtttaactctaaacagaagaatgatgagaaaaagttttttaatgtattgctgtatgctcgtatgtacgatgggcattttcagcggatgtaacaaaaatgacgacaagaagccattcgaattggcgggtaaatggaatgtaaaagaaatgccgatggatatcgtgtgggaagctccggacaatgtcgtgattgaggcgggaaagatcaaacttacggtcaagcaattgactgccatgatgactccgaccctgaacgaactcgtacaggccgggctgaaagacgttacgttcacggccgatggaaaaattgaagccacatataagaaaaaagattcgaaagaatggatggcggccaaaggttatgcgacatacaacacaaaagtcgctaacaaaatcctgttgcatccggacgcagacaaggttttcgcggaaatgaaaggtcttgatgctacgaaattggctgctatcaaagtgctgtttaaggccgggatacccgtatattatacctcgaatggttcctctacccgcttctatctcgacacggaaacggttaaggcattacgcaatgtgctgcctgtcctgttggcatcggtcaaaagtattccggactatgcgaagcctcttatagccaaggaactccccaacctgttggaaaaatcgacgaaaatcgagatcggtctgactttgaccaaagcggccaattgatta Mask Tandem Repeat Region ================================================ taatcaattggccgctttggtcaaagtcagaccgatctcgattttcgtcgatttttccaacaggttggggagttccttggctataagaggcttcgcatagtccggaatacttttgaccgatgccaacaggacaggcagcacattgcgtaatgccttaaccgtttccgtgtcgagatagaagcgggtagaggaaccattcgaggtataatatacgggtatcccggccttaaacagcactttgatagcagccaatttcgtagcatcaagacctttcatttccgcgaaaaccttgtctgcgtccggatgcaacaggattttgttagcgacttttgtgttgtatgtcgcataacctttggccgccatccattctttcgaatcttttttcttatatgtggcttcaatttttccatcggccgtgaacgtaacgtctttcagcccggcctgtacgagttcgttcagggtcggagtcatcatggcagtcaattgcttgaccgtaagtttgatctttcccgcctcaatcacgacattgtccggagcttcccacacgatatccatcggcatttcttttacattccatttacccgccaattcgaatggcttcttgtcgtcatttttgttacatccgctgaaaatgcccatcgtacatacgagcatacagcaatacattaaaaaactttttctcatcattcttctgtttagagttaaacttggtttttttatcgggacaaaagtactacatttgccggcaaaaaaaatcttttt Find is-nt database================================================ Query_seq: TF2782:TF2783|TF2782:TF2783:conserved hypothetical protein:aminotransferase, PatB family:->->:2967417..2968178 762 taatcaattggccgctttggtcaaagtcagaccgatctcgattttcgtcgatttttccaacaggttggggagttccttggctataagaggcttcgcatagtccggaatacttttgaccgatgccaacaggacaggcagcacattgcgtaatgccttaaccgtttccgtgtcgagatagaagcgggtagaggaaccattcgaggtataatatacgggtatcccggccttaaacagcactttgatagcagccaatttcgtagcatcaagacctttcatttccgcgaaaaccttgtctgcgtccggatgcaacaggattttgttagcgacttttgtgttgtatgtcgcataacctttggccgccatccattctttcgaatcttttttcttatatgtggcttcaatttttccatcggccgtgaacgtaacgtctttcagcccggcctgtacgagttcgttcagggtcggagtcatcatggcagtcaattgcttgaccgtaagtttgatctttcccgcctcaatcacgacattgtccggagcttcccacacgatatccatcggcatttcttttacattccatttacccgccaattcgaatggcttcttgtcgtcatttttgttacatccgctgaaaatgcccatcgtacatacgagcatacagcaatacattaaaaaactttttctcatcattcttctgtttagagttaaacttggtttttttatcgggacaaaagtactacatttgccggcaaaaaaaatcttttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF2782:TF2783|TF2782:TF2783:conserved hypothetical protein:aminotransferase, PatB family:->->:2967417..2968178 762 taatcaattggccgctttggtcaaagtcagaccgatctcgattttcgtcgatttttccaacaggttggggagttccttggctataagaggcttcgcatagtccggaatacttttgaccgatgccaacaggacaggcagcacattgcgtaatgccttaaccgtttccgtgtcgagatagaagcgggtagaggaaccattcgaggtataatatacgggtatcccggccttaaacagcactttgatagcagccaatttcgtagcatcaagacctttcatttccgcgaaaaccttgtctgcgtccggatgcaacaggattttgttagcgacttttgtgttgtatgtcgcataacctttggccgccatccattctttcgaatcttttttcttatatgtggcttcaatttttccatcggccgtgaacgtaacgtctttcagcccggcctgtacgagttcgttcagggtcggagtcatcatggcagtcaattgcttgaccgtaagtttgatctttcccgcctcaatcacgacattgtccggagcttcccacacgatatccatcggcatttcttttacattccatttacccgccaattcgaatggcttcttgtcgtcatttttgttacatccgctgaaaatgcccatcgtacatacgagcatacagcaatacattaaaaaactttttctcatcattcttctgtttagagttaaacttggtttttttatcgggacaaaagtactacatttgccggcaaaaaaaatcttttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF2782:TF2783|TF2782:TF2783:conserved hypothetical protein:aminotransferase, PatB family:->->:2967417..2968178 762 taatcaattggccgctttggtcaaagtcagaccgatctcgattttcgtcgatttttccaacaggttggggagttccttggctataagaggcttcgcatagtccggaatacttttgaccgatgccaacaggacaggcagcacattgcgtaatgccttaaccgtttccgtgtcgagatagaagcgggtagaggaaccattcgaggtataatatacgggtatcccggccttaaacagcactttgatagcagccaatttcgtagcatcaagacctttcatttccgcgaaaaccttgtctgcgtccggatgcaacaggattttgttagcgacttttgtgttgtatgtcgcataacctttggccgccatccattctttcgaatcttttttcttatatgtggcttcaatttttccatcggccgtgaacgtaacgtctttcagcccggcctgtacgagttcgttcagggtcggagtcatcatggcagtcaattgcttgaccgtaagtttgatctttcccgcctcaatcacgacattgtccggagcttcccacacgatatccatcggcatttcttttacattccatttacccgccaattcgaatggcttcttgtcgtcatttttgttacatccgctgaaaatgcccatcgtacatacgagcatacagcaatacattaaaaaactttttctcatcattcttctgtttagagttaaacttggtttttttatcgggacaaaagtactacatttgccggcaaaaaaaatcttttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taatcaattggccgctttggtcaaagtcagaccgatctcgattttcgtcgatttttccaacaggttggggagttccttggctataagaggcttcgcatagtccggaatacttttgaccgatgccaacaggacaggcagcacattgcgtaatgccttaaccgtttccgtgtcgagatagaagcgggtagaggaaccattcgaggtataatatacgggtatcccggccttaaacagcactttgatagcagccaatttcgtagcatcaagacctttcatttccgcgaaaaccttgtctgcgtccggatgcaacaggattttgttagcgacttttgtgttgtatgtcgcataacctttggccgccatccattctttcgaatcttttttcttatatgtggcttcaatttttccatcggccgtgaacgtaacgtctttcagcccggcctgtacgagttcgttcagggtcggagtcatcatggcagtcaattgcttgaccgtaagtttgatctttcccgcctcaatcacgacattgtccggagcttcccacacgatatccatcggcatttcttttacattccatttacccgccaattcgaatggcttcttgtcgtcatttttgttacatccgctgaaaatgcccatcgtacatacgagcatacagcaatacattaaaaaactttttctcatcattcttctgtttagagttaaacttggtttttttatcgggacaaaagtactacatttgccggcaaaaaaaatcttttt Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 8 End: 97 ....... M A A L V K V R P I S I F V D F S N R L G S S L A I R G F A ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 7 End: 147 ...... M G R F G Q S Q T D L D F R R F F Q Q V G E F L G Y K R L R I V R N T F D R C Q Q D R Q H I A ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 218 End: 346 ......................................................................................................................................................................................................................... M P A L N S T L I A A N F V A S R P F I S A K T L S A S G C N R I L L A T F V L Y V A ................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 175 End: 666 .............................................................................................................................................................................. M E A G R G T I R G I I Y G Y P G L K Q H F D S S Q F R S I K T F H F R E N L V C V R M Q Q D F V S D F C V V C R I T F ................................................................................................ Protein_Len: 60 Strand: + Start: 353 End: 760 ................................................................................................................................................................................................................................................................................................................................................................ M A A I H S F E S F F L Y V A S I F P S A V N V T S F S P A C T S S F R V G V I M A V N C L T V S L I F P A S I T T L S .. Protein_Len: 39 Strand: + Start: 645 End: 761 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M R A Y S N T L K N F F S S F F C L E L N L V F L S G Q K Y Y I C R Q K K S F . Protein_Len: 31 Strand: - Start: 570 End: 662 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G N V R W N S H S R T T M K T V D A S F A W R V Y S C V A M .................................................................................................... Protein_Len: 45 Strand: - Start: 276 End: 410 ................................................................................................................................................................................................................................................................................... K R S F R T Q T R I C C S K T L S K Q T T H R M V K P R W G N K R I K K R I H P K L K E M ................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 84 End: 266 ................................................................................... L S R M T R F V K S R H W C S L C C M A Y H R L R K R T S I S A P L P V M R P I I Y P Y G P R L C C K S L L W N R L M M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 7 End: 756 ...... K G A L E F P K K D D N K N C G S F I G M T C V L M C C Y M L F S K R M M R R N L T L S P K K I P V F T S C K G A F F M ...... Protein_Len: 50 Strand: - Start: 2 End: 151 . I L Q G S Q D F D S R D R N E D I K G V P Q P T G Q S Y S A E C L G S Y K Q G I G V P C A A C Q T M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taatcaattggccgctttggtcaaagtcagaccgatctcgattttcgtcgatttttccaacaggttggggagttccttggctataagaggcttcgcatagtccggaatacttttgaccgatgccaacaggacaggcagcacattgcgtaatgccttaaccgtttccgtgtcgagatagaagcgggtagaggaaccattcgaggtataatatacgggtatcccggccttaaacagcactttgatagcagccaatttcgtagcatcaagacctttcatttccgcgaaaaccttgtctgcgtccggatgcaacaggattttgttagcgacttttgtgttgtatgtcgcataacctttggccgccatccattctttcgaatcttttttcttatatgtggcttcaatttttccatcggccgtgaacgtaacgtctttcagcccggcctgtacgagttcgttcagggtcggagtcatcatggcagtcaattgcttgaccgtaagtttgatctttcccgcctcaatcacgacattgtccggagcttcccacacgatatccatcggcatttcttttacattccatttacccgccaattcgaatggcttcttgtcgtcatttttgttacatccgctgaaaatgcccatcgtacatacgagcatacagcaatacattaaaaaactttttctcatcattcttctgtttagagttaaacttggtttttttatcgggacaaaagtactacatttgccggcaaaaaaaatcttttt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taatcaattggccgctttggtcaaagtcagaccgatctcgattttcgtcgatttttccaacaggttggggagttccttggctataagaggcttcgcatagtccggaatacttttgaccgatgccaacaggacaggcagcacattgcgtaatgccttaaccgtttccgtgtcgagatagaagcgggtagaggaaccattcgaggtataatatacgggtatcccggccttaaacagcactttgatagcagccaatttcgtagcatcaagacctttcatttccgcgaaaaccttgtctgcgtccggatgcaacaggattttgttagcgacttttgtgttgtatgtcgcataacctttggccgccatccattctttcgaatcttttttcttatatgtggcttcaatttttccatcggccgtgaacgtaacgtctttcagcccggcctgtacgagttcgttcagggtcggagtcatcatggcagtcaattgcttgaccgtaagtttgatctttcccgcctcaatcacgacattgtccggagcttcccacacgatatccatcggcatttcttttacattccatttacccgccaattcgaatggcttcttgtcgtcatttttgttacatccgctgaaaatgcccatcgtacatacgagcatacagcaatacattaaaaaactttttctcatcattcttctgtttagagttaaacttggtttttttatcgggacaaaagtactacatttgccggcaaaaaaaatcttttt Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TF2782:TF2783|TF2782:TF2783:conserved hypothetical protein:aminotransferase, PatB family:->->:2967417..2968178 762 taatcaattggccgctttggtcaaagtcagaccgatctcgattttcgtcgatttttccaacaggttggggagttccttggctataagaggcttcgcatagtccggaatacttttgaccgatgccaacaggacaggcagcacattgcgtaatgccttaaccgtttccgtgtcgagatagaagcgggtagaggaaccattcgaggtataatatacgggtatcccggccttaaacagcactttgatagcagccaatttcgtagcatcaagacctttcatttccgcgaaaaccttgtctgcgtccggatgcaacaggattttgttagcgacttttgtgttgtatgtcgcataacctttggccgccatccattctttcgaatcttttttcttatatgtggcttcaatttttccatcggccgtgaacgtaacgtctttcagcccggcctgtacgagttcgttcagggtcggagtcatcatggcagtcaattgcttgaccgtaagtttgatctttcccgcctcaatcacgacattgtccggagcttcccacacgatatccatcggcatttcttttacattccatttacccgccaattcgaatggcttcttgtcgtcatttttgttacatccgctgaaaatgcccatcgtacatacgagcatacagcaatacattaaaaaactttttctcatcattcttctgtttagagttaaacttggtttttttatcgggacaaaagtactacatttgccggcaaaaaaaatcttttt Intra-Species Hit: Count: 1 Min: 1 Max: 747 Len: 747 Subject: tfor_TF2782_TF2783|conserved hypothetical protein:aminotransferase, PatB family|POSITIVE:POSITIVE|[2967417,2968178]|762 HSP 1 e-value: 0.0 bit: 1439.0 Len: 747 Query Start:1 Query End:747 Subject Strand: POSITIVE Subject Start: 1 Subject End: 747 taatcaattggccgctttggtcaaagtcagaccgatctcgattttcgtcgatttttccaacaggttggggagttccttggctataagaggcttcgcatagtccggaatacttttgaccgatgccaacaggacaggcagcacattgcgtaatgccttaaccgtttccgtgtcgagatagaagcgggtagaggaaccattcgaggtataatatacgggtatcccggccttaaacagcactttgatagcagccaatttcgtagcatcaagacctttcatttccgcgaaaaccttgtctgcgtccggatgcaacaggattttgttagcgacttttgtgttgtatgtcgcataacctttggccgccatccattctttcgaatcttttttcttatatgtggcttcaatttttccatcggccgtgaacgtaacgtctttcagcccggcctgtacgagttcgttcagggtcggagtcatcatggcagtcaattgcttgaccgtaagtttgatctttcccgcctcaatcacgacattgtccggagcttcccacacgatatccatcggcatttcttttacattccatttacccgccaattcgaatggcttcttgtcgtcatttttgttacatccgctgaaaatgcccatcgtacatacgagcatacagcaatacattaaaaaactttttctcatcattcttctgtttagagttaaacttggnnnnnnnatcgggacaaaagtactacatttgccggc............... taatcaattggccgctttggtcaaagtcagaccgatctcgattttcgtcgatttttccaacaggttggggagttccttggctataagaggcttcgcatagtccggaatacttttgaccgatgccaacaggacaggcagcacattgcgtaatgccttaaccgtttccgtgtcgagatagaagcgggtagaggaaccattcgaggtataatatacgggtatcccggccttaaacagcactttgatagcagccaatttcgtagcatcaagacctttcatttccgcgaaaaccttgtctgcgtccggatgcaacaggattttgttagcgacttttgtgttgtatgtcgcataacctttggccgccatccattctttcgaatcttttttcttatatgtggcttcaatttttccatcggccgtgaacgtaacgtctttcagcccggcctgtacgagttcgttcagggtcggagtcatcatggcagtcaattgcttgaccgtaagtttgatctttcccgcctcaatcacgacattgtccggagcttcccacacgatatccatcggcatttcttttacattccatttacccgccaattcgaatggcttcttgtcgtcatttttgttacatccgctgaaaatgcccatcgtacatacgagcatacagcaatacattaaaaaactttttctcatcattcttctgtttagagttaaacttggtttttttatcgggacaaaagtactacatttgccggc............... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUCAAUUGGCCGCUUUGGUCAAAGUCAGACCGAUCUCGAUUUUCGUCGAUUUUUCCAACAGGUUGGGGAGUUCCUUGGCUAUAAGAGGCUUCGCAUAGUCCGGAAUACUUUUGACCGAUGCCAACAGGACAGGCAGCACAUUGCGUAAUGCCUUAACCGUUUCCGUGUCGAGAUAGAAGCGGGUAGAGGAACCAUUCGAGGUAUAAUAUACGGGUAUCCCGGCCUUAAACAGCACUUUGAUAGCAGCCAAUUUCGUAGCAUCAAGACCUUUCAUUUCCGCGAAAACCUUGUCUGCGUCCGGAUGCAACAGGAUUUUGUUAGCGACUUUUGUGUUGUAUGUCGCAUAACCUUUGGCCGCCAUCCAUUCUUUCGAAUCUUUUUUCUUAUAUGUGGCUUCAAUUUUUCCAUCGGCCGUGAACGUAACGUCUUUCAGCCCGGCCUGUACGAGUUCGUUCAGGGUCGGAGUCAUCAUGGCAGUCAAUUGCUUGACCGUAAGUUUGAUCUUUCCCGCCUCAAUCACGACAUUGUCCGGAGCUUCCCACACGAUAUCCAUCGGCAUUUCUUUUACAUUCCAUUUACCCGCCAAUUCGAAUGGCUUCUUGUCGUCAUUUUUGUUACAUCCGCUGAAAAUGCCCAUCGUACAUACGAGCAUACAGCAAUACAUUAAAAAACUUUUUCUCAUCAUUCUUCUGUUUAGAGUUAAACUUGGUUUUUUUAUCGGGACAAAAGUACUACAUUUGCCGGC ...(((((((((((..((((((.......))))))...))......((((((....((....)).(((((((((((............(((.(((....(((..((....))..)))))).)))....((((.((((..((.....))..))))............((((((.(((.((.(((((.((.((((..(((.(((((...(((((.((((....(((((...........((((((.((.((.......)).)))))))).............((((....(((((.(((((....)))))))))).........(((((......)))))...)))).........)))))..))))........(((......))).)))))...))))))))..)))).((((((.((((((.(((.((...(((......)))...))))))))))).)))))).((((.....((.(((((....))))).)).....))))))..))))).)).))).)))))).)))))))))))))))..........))))))........................))))))).))..(((....(((.((.((((((((..(....((((...((((...((((....)))))))).))))........((((((((..........(((((.......))))).......))))))))....)..)))))))))).)))...)))... (-200.63) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCCGGCAAAUGUAGUACUUUUGUCCCGAUAAAAAAACCAAGUUUAACUCUAAACAGAAGAAUGAUGAGAAAAAGUUUUUUAAUGUAUUGCUGUAUGCUCGUAUGUACGAUGGGCAUUUUCAGCGGAUGUAACAAAAAUGACGACAAGAAGCCAUUCGAAUUGGCGGGUAAAUGGAAUGUAAAAGAAAUGCCGAUGGAUAUCGUGUGGGAAGCUCCGGACAAUGUCGUGAUUGAGGCGGGAAAGAUCAAACUUACGGUCAAGCAAUUGACUGCCAUGAUGACUCCGACCCUGAACGAACUCGUACAGGCCGGGCUGAAAGACGUUACGUUCACGGCCGAUGGAAAAAUUGAAGCCACAUAUAAGAAAAAAGAUUCGAAAGAAUGGAUGGCGGCCAAAGGUUAUGCGACAUACAACACAAAAGUCGCUAACAAAAUCCUGUUGCAUCCGGACGCAGACAAGGUUUUCGCGGAAAUGAAAGGUCUUGAUGCUACGAAAUUGGCUGCUAUCAAAGUGCUGUUUAAGGCCGGGAUACCCGUAUAUUAUACCUCGAAUGGUUCCUCUACCCGCUUCUAUCUCGACACGGAAACGGUUAAGGCAUUACGCAAUGUGCUGCCUGUCCUGUUGGCAUCGGUCAAAAGUAUUCCGGACUAUGCGAAGCCUCUUAUAGCCAAGGAACUCCCCAACCUGUUGGAAAAAUCGACGAAAAUCGAGAUCGGUCUGACUUUGACCAAAGCGGCCAAUUGAUUA ...(((...(((.((..((((((..((...(((((((....(((..(((....((......))..))))))..)))))))......((((((.((((((((.......))))))))...)))))).))..))))))...)).)))....)))..((.(((((((.(.(..................((((((((((((...((.((((....)))).))..(((((.(((.((((((((..............(((((((....)))))))((((..(((.((((..((((.(((....))).)))).)))).......(((....((((.(((((..((((........(((.((..............((((....)))).((((((((((((..((((.(((((.............))))))))).......(((.(((((.((((..........((((((......)))))))))).))))).)))...))))))))))))...))))).)))).)))))))))...)))..........))).))))........)))))))).))).)))))((....))....(((((.(((.....))).))))))))).)))))))).((((((.....((((((.(((((.((....)).)))))))..))))...........((..((....((((......))))......))..)).))))))..).).)))))))))... (-214.42) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 461 479 432 100 52 tfor:TF1661|5end_conserved_hypothetical_protein_1776065..1776295_POSITIVE 439 200 151 219 182 tfor:TF0960|5end_beta-galactosidase_1008618..1008848_POSITIVE 429 460 411 122 67 tfor:TF0253|5end_conserved_hypothetical_protein_283707..283937_POSITIVE 427 446 401 63 20 tfor:TF1489|5end_argininosuccinate_lyase_1588904..1589134_POSITIVE 420 460 411 80 30 tfor:TF0579|5end_DNA-binding_protein_HU_609724..609954_POSITIVE 417 489 441 214 176 tfor:TF0240|5end_conserved_hypothetical_protein;_possible_gycosyltransferase_I_family_protein_270086..270316_POSITIVE 410 190 142 96 33 tfor:TF2378|5end_peptide_chain_release_factor_1_2542682..2542912_POSITIVE 400 558 511 182 132 tfor:TF1712|5end_conserved_hypothetical_protein_1832392..1832622_POSITIVE 398 170 121 82 29 tfor:TF1885|5end_conserved_hypothetical_protein_2037307..2037537_POSITIVE 398 200 153 205 157 tfor:TF0036|5end_beta-hexosaminidase_precursor_35821..36051_POSITIVE 396 477 432 206 161 tfor:TF1782|5end_conserved_hypothetical_protein_1922003..1922233_POSITIVE 396 460 411 109 42 tfor:TF1577|5end_hypothetical_protein_1685960..1686190_POSITIVE 394 476 431 224 191 tfor:TF2789|5end_enoyl-[acyl-carrier-protein]_reductase_2972431..2972661_POSITIVE 394 478 431 71 25 tfor:TF2270|5end_conserved_hypothetical_protein_2435463..2435693_POSITIVE 394 477 433 183 119 tfor:TF2160|5end_magnesium_chelatase,_subunit_I_2335974..2336204_POSITIVE 394 105 62 70 22 tfor:TF0122|5end_hypothetical_protein_133162..133392_POSITIVE 393 460 411 72 24 tfor:TF2345|5end_dGTP_triphosphohydrolase_2508372..2508602_POSITIVE 392 560 511 208 149 tfor:TF2081|5end_phosphopantetheine_adenylyltransferase_2248475..2248705_POSITIVE 391 477 432 192 134 tfor:TF2358|5end_possible_small-conductance_mechanosensitive_channel_2523829..2524059_POSITIVE 391 449 408 57 7 tfor:TF0462|5end_possible_cobalamin_biosynthesis_precorrin-3_methylase_477600..477830_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 439 200 151 61 24 tfor:TF0959|3end_periplasmic_protease_1008540..1008690_POSITIVE 429 460 411 94 39 tfor:TF0252|3end_hypothetical_protein_283759..283909_POSITIVE 427 446 401 54 11 tfor:TF1488|3end_conserved_hypothetical_protein_1588975..1589125_POSITIVE 393 460 411 54 6 tfor:TF2344|3end_ATP/GTP_binding_protein_2508434..2508584_POSITIVE 390 478 435 75 32 tfor:TF0841|3end_NADH_dehydrogenase/NAD(P)H_nitroreductase_893048..893198_POSITIVE 389 448 401 142 84 tfor:TF2515|3end_outer_membrane_protein,_TonB_dependent_receptor_2694865..2695015_POSITIVE 385 478 434 45 1 tfor:TF0433|3end_60_kDa_inner_membrane_protein_455386..455536_POSITIVE 385 449 408 83 29 tfor:TF0247|3end_conserved_hypothetical_protein_278348..278498_POSITIVE 384 105 66 45 4 tfor:TF0121|3end_hypothetical_protein_133217..133367_POSITIVE 378 460 411 68 9 tfor:TF1930|3end_two-component_response_regulator_2078203..2078353_POSITIVE 372 559 521 132 90 tfor:TF2342|3end_glutathione_peroxidase_2506639..2506789_POSITIVE 369 139 91 71 5 tfor:TF0212|3end_DNA/pantothenate_metabolism_flavoprotein_239001..239151_POSITIVE 367 476 431 81 19 tfor:TF0326|3end_hypothetical_protein_354317..354467_POSITIVE 365 327 281 150 104 tfor:TF2882|3end_conserved_hypothetical_protein_3074401..3074551_POSITIVE 365 230 183 71 25 tfor:TF2400|3end_conserved_hypothetical_protein_2573249..2573399_POSITIVE 360 225 182 142 105 tfor:TF0596|3end_conserved_hypothetical_protein_628652..628802_POSITIVE 359 466 421 120 67 tfor:TF2640|3end_hypothetical_protein_2809533..2809683_POSITIVE 358 458 416 143 102 tfor:TF0717|3end_signal_recognition_particle_769059..769209_POSITIVE 353 475 435 63 15 tfor:TF0214|3end_DNA_recombination_and_repair_protein,_RecN_241571..241721_POSITIVE 351 440 392 146 84 tfor:TF2487|3end_transposase_2663956..2664106_POSITIVE