Origin IGS: tataatttaatctcttagagtttaactcctcgctacttgcagcgagaagtaaaaattattcctctataaactacccgtccaaaagcgggcgagtagttcatttaatcaattcgcggacaacaatctcacaataattttatgaggttgttgacaagaaactcaattccaatttccatatggcgtatgtattgttcttgatgttataaaagaaccattatttgcgttatagatcgagaatcttatggcgttttgtccagacaagtcagtttttaccactgtaaatgcttctgaatttgtatagccctggtccaataaggtcgcttgtaattctctcatcatgttttcaagtcgagtcccgaattgatcaatcatctgagacagtcctggtataatactcaatcctgtatttgcccaaatatctgcttcggaaatagattggttacattggttacgaataaaatcagataaattcatataatacacttgtgatgtttgccctggataagttgaattcccatgaatatacacatcattggctacataccctatcccttctacgtaacctccattccaactgttactgttgagcatggtgttatactcatattgggtgtagggattagcggatgtcccatcccctccacctacgtagtgcatttgggatgcttcttcaattactggcaatgtttttgccaactcatctaaactttttctggtcaattttttca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgaaaaaattgaccagaaaaagtttagatgagttggcaaaaacattgccagtaattgaagaagcatcccaaatgcactacgtaggtggaggggatgggacatccgctaatccctacacccaatatgagtataacaccatgctcaacagtaacagttggaatggaggttacgtagaagggatagggtatgtagccaatgatgtgtatattcatgggaattcaacttatccagggcaaacatcacaagtgtattatatgaatttatctgattttattcgtaaccaatgtaaccaatctatttccgaagcagatatttgggcaaatacaggattgagtattataccaggactgtctcagatgattgatcaattcgggactcgacttgaaaacatgatgagagaattacaagcgaccttattggaccagggctatacaaattcagaagcatttacagtggtaaaaactgacttgtctggacaaaacgccataagattctcgatctataacgcaaataatggttcttttataacatcaagaacaatacatacgccatatggaaattggaattgagtttcttgtcaacaacctcataaaattattgtgagattgttgtccgcgaattgattaaatgaactactcgcccgcttttggacgggtagtttatagaggaataatttttacttctcgctgcaagtagcgaggagttaaactctaagagattaaattata Mask Tandem Repeat Region ================================================ tataatttaatctcttagagtttaactcctcgctacttgcagcgagaagtaaaaattattcctctataaactacccgtccaaaagcgggcgagtagttcatttaatcaattcgcggacaacaatctcacaataattttatgaggttgttgacaagaaactcaattccaatttccatatggcgtatgtattgttcttgatgttataaaagaaccattatttgcgttatagatcgagaatcttatggcgttttgtccagacaagtcagtttttaccactgtaaatgcttctgaatttgtatagccctggtccaataaggtcgcttgtaattctctcatcatgttttcaagtcgagtcccgaattgatcaatcatctgagacagtcctggtataatactcaatcctgtatttgcccaaatatctgcttcggaaatagattggttacattggttacgaataaaatcagataaattcatataatacacttgtgatgtttgccctggataagttgaattcccatgaatatacacatcattggctacataccctatcccttctacgtaacctccattccaactgttactgttgagcatggtgttatactcatattgggtgtagggattagcggatgtcccatcccctccacctacgtagtgcatttgggatgcttcttcaattactggcaatgtttttgccaactcatctaaactttttctggtcaattttttca Find is-nt database================================================ Query_seq: TF2720:TF2721|TF2720:TF2721:conserved hypothetical protein:conserved hypothetical protein:->->:2895002..2895729 728 tataatttaatctcttagagtttaactcctcgctacttgcagcgagaagtaaaaattattcctctataaactacccgtccaaaagcgggcgagtagttcatttaatcaattcgcggacaacaatctcacaataattttatgaggttgttgacaagaaactcaattccaatttccatatggcgtatgtattgttcttgatgttataaaagaaccattatttgcgttatagatcgagaatcttatggcgttttgtccagacaagtcagtttttaccactgtaaatgcttctgaatttgtatagccctggtccaataaggtcgcttgtaattctctcatcatgttttcaagtcgagtcccgaattgatcaatcatctgagacagtcctggtataatactcaatcctgtatttgcccaaatatctgcttcggaaatagattggttacattggttacgaataaaatcagataaattcatataatacacttgtgatgtttgccctggataagttgaattcccatgaatatacacatcattggctacataccctatcccttctacgtaacctccattccaactgttactgttgagcatggtgttatactcatattgggtgtagggattagcggatgtcccatcccctccacctacgtagtgcatttgggatgcttcttcaattactggcaatgtttttgccaactcatctaaactttttctggtcaattttttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF2720:TF2721|TF2720:TF2721:conserved hypothetical protein:conserved hypothetical protein:->->:2895002..2895729 728 tataatttaatctcttagagtttaactcctcgctacttgcagcgagaagtaaaaattattcctctataaactacccgtccaaaagcgggcgagtagttcatttaatcaattcgcggacaacaatctcacaataattttatgaggttgttgacaagaaactcaattccaatttccatatggcgtatgtattgttcttgatgttataaaagaaccattatttgcgttatagatcgagaatcttatggcgttttgtccagacaagtcagtttttaccactgtaaatgcttctgaatttgtatagccctggtccaataaggtcgcttgtaattctctcatcatgttttcaagtcgagtcccgaattgatcaatcatctgagacagtcctggtataatactcaatcctgtatttgcccaaatatctgcttcggaaatagattggttacattggttacgaataaaatcagataaattcatataatacacttgtgatgtttgccctggataagttgaattcccatgaatatacacatcattggctacataccctatcccttctacgtaacctccattccaactgttactgttgagcatggtgttatactcatattgggtgtagggattagcggatgtcccatcccctccacctacgtagtgcatttgggatgcttcttcaattactggcaatgtttttgccaactcatctaaactttttctggtcaattttttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF2720:TF2721|TF2720:TF2721:conserved hypothetical protein:conserved hypothetical protein:->->:2895002..2895729 728 tataatttaatctcttagagtttaactcctcgctacttgcagcgagaagtaaaaattattcctctataaactacccgtccaaaagcgggcgagtagttcatttaatcaattcgcggacaacaatctcacaataattttatgaggttgttgacaagaaactcaattccaatttccatatggcgtatgtattgttcttgatgttataaaagaaccattatttgcgttatagatcgagaatcttatggcgttttgtccagacaagtcagtttttaccactgtaaatgcttctgaatttgtatagccctggtccaataaggtcgcttgtaattctctcatcatgttttcaagtcgagtcccgaattgatcaatcatctgagacagtcctggtataatactcaatcctgtatttgcccaaatatctgcttcggaaatagattggttacattggttacgaataaaatcagataaattcatataatacacttgtgatgtttgccctggataagttgaattcccatgaatatacacatcattggctacataccctatcccttctacgtaacctccattccaactgttactgttgagcatggtgttatactcatattgggtgtagggattagcggatgtcccatcccctccacctacgtagtgcatttgggatgcttcttcaattactggcaatgtttttgccaactcatctaaactttttctggtcaattttttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 187 Max: 726 Len: 540 Subject: UniRef90_Q5LJ92 Cluster: Hypothetical protein; n=1; Bacteroides fragilis NCTC 9343|Rep: Hypothetical protein - Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) HSP 1 e-value: 1.0E-38 bit: 162.0 Len: 540 Query Start:187 Query End:726 Subject Strand: null Subject Start: 2 Subject End: 175 .......................................................................................................................................................................................... K K L T R K S L D E L A K T L P V I E E A S Q M H Y V G G G D G T S A N P Y T Q Y E Y N T M L N S N S W N G G Y V E G I G Y V A N D V Y I H G N S T Y P G Q T S Q V Y Y M N L S D F I R N Q C N Q S I S E A - - D I W A N T G L S I I P G L S Q M I D Q F G T R L E N M M R E L Q A T L L D Q G Y T N S E A F T V V K T D L S G Q N A I R F S I Y N A N N G S F I T S R T I .. .......................................................................................................................................................................................... K K L T R K S L N E L A K T M P V I E E S L Q M S Y V G G G N G T S A N P Y T Q A E F D N M L S N D N W N G G Y V E G M G Y V A T N T Y I Y G S S V Y S G S V S Q M Y Y - T F P D Y V - - - - - T S I S S T G W D R F L S E A V G L T P - L G S L V S H V S Q D I T N M E L S I L R E L L E K G Y N A S S S F N F V K T N I P - Y G G T Q I S V Y D A A T G Q F V T S R T V .. Subject: UniRef90_Q650S0 Cluster: Hypothetical protein; n=1; Bacteroides fragilis|Rep: Hypothetical protein - Bacteroides fragilis HSP 1 e-value: 4.0E-20 bit: 100.0 Len: 186 Query Start:541 Query End:726 Subject Strand: null Subject Start: 2 Subject End: 63 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K L T R K S L D E L A K T L P V I E E A S Q M H Y V G G G D G T S A N P Y T Q Y E Y N T M L N S N S W N G G Y V E G I G Y .. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K L T R K S L N E L A K T M P V I E E S L Q M S Y V G G G N G T S A N P Y T Q E E Y E S M V S S G I W N G G Y V E N W G Y .. tataatttaatctcttagagtttaactcctcgctacttgcagcgagaagtaaaaattattcctctataaactacccgtccaaaagcgggcgagtagttcatttaatcaattcgcggacaacaatctcacaataattttatgaggttgttgacaagaaactcaattccaatttccatatggcgtatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnca Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 282 End: 389 ......................................................................................................................................................................................................................................................................................... M L L N L Y S P G P I R S L V I L S S C F Q V E S R I D Q S S E T V L V ................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 361 End: 465 ........................................................................................................................................................................................................................................................................................................................................................................ M I N H L R Q S W Y N T Q S C I C P N I C F G N R L V T L V T N K I R ....................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: + Start: 465 End: 584 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M N S Y N T L V M F A L D K L N S H E Y T H H W L H T L S L L R N L H S N C Y C ................................................................................................................................................ Protein_Len: 60 Strand: + Start: 511 End: 702 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M P M N I H I I G Y I P Y P F Y V T S I P T V T V E H G V I L I L G V G I S G C P I P S T Y V V H L G C F F N Y W Q C F .......................... Protein_Len: 34 Strand: + Start: 627 End: 728 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M S H P L H L R S A F G M L L Q L L A M F L P T H L N F F W S I F S Protein_Len: 60 Strand: - Start: 163 End: 720 .................................................................................................................................................................. Y G I G E V Y G G N W S N S N L M T N Y E Y Q T Y P N A S T G D G G G V Y H M Q S A E E I V P L T K A L E D L S K R T M ........ tataatttaatctcttagagtttaactcctcgctacttgcagcgagaagtaaaaattattcctctataaactacccgtccaaaagcgggcgagtagttcatttaatcaattcgcggacaacaatctcacaataattttatgaggttgttgacaagaaactcaattccaatttccatatggcgtatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: + Score: 83 Start: 678 End: 694 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAATGTTTTTGCC.................................. PromScan Matrix: RpoN Strand: - Score: 83 Start: 680 End: 696 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCAAAAACATTGCC................................ tataatttaatctcttagagtttaactcctcgctacttgcagcgagaagtaaaaattattcctctataaactacccgtccaaaagcgggcgagtagttcatttaatcaattcgcggacaacaatctcacaataattttatgaggttgttgacaagaaactcaattccaatttccatatggcgtatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 64 HP_score: -6.0 Tail_Score: -3.794 Start: 67 End: 100 Full_Region: AAAATTATTCCTCTA TAAACTACCCGTCC AAAAGC GGGCGAGTAGTTCA TTTAATCAATTCGCG ..................................................................TAAACTACCCGTCCAAAAGCGGGCGAGTAGTTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 72 HP_score: -7.5 Tail_Score: -3.86346 Start: 71 End: 96 Full_Region: aattgattaaatgaa ctactcgcccg cttt tggacgggtag tttatagaggaataa ......................................................................ctactcgcccgcttttggacgggtag........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 52 HP_score: -4.5 Tail_Score: -3.30159 Start: 121 End: 147 Full_Region: tgagtttcttgtcaa caacctcataa aatta ttgtgagattg ttgtccgcgaattga ........................................................................................................................caacctcataaaattattgtgagattg..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TF2720:TF2721|TF2720:TF2721:conserved hypothetical protein:conserved hypothetical protein:->->:2895002..2895729 728 tataatttaatctcttagagtttaactcctcgctacttgcagcgagaagtaaaaattattcctctataaactacccgtccaaaagcgggcgagtagttcatttaatcaattcgcggacaacaatctcacaataattttatgaggttgttgacaagaaactcaattccaatttccatatggcgtatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnca Intra-Species Hit: Count: 1 Min: 1 Max: 185 Len: 185 Subject: tfor_TF2720_TF2721|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2895002,2895729]|728 HSP 1 e-value: 1.0E-100 bit: 367.0 Len: 185 Query Start:1 Query End:185 Subject Strand: POSITIVE Subject Start: 1 Subject End: 185 tataatttaatctcttagagtttaactcctcgctacttgcagcgagaagtaaaaattattcctctataaactacccgtccaaaagcgggcgagtagttcatttaatcaattcgcggacaacaatctcacaataattttatgaggttgttgacaagaaactcaattccaatttccatatggcgtat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tataatttaatctcttagagtttaactcctcgctacttgcagcgagaagtaaaaattattcctctataaactacccgtccaaaagcgggcgagtagttcatttaatcaattcgcggacaacaatctcacaataattttatgaggttgttgacaagaaactcaattccaatttccatatggcgtat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAUAAUUUAAUCUCUUAGAGUUUAACUCCUCGCUACUUGCAGCGAGAAGUAAAAAUUAUUCCUCUAUAAACUACCCGUCCAAAAGCGGGCGAGUAGUUCAUUUAAUCAAUUCGCGGACAACAAUCUCACAAUAAUUUUAUGAGGUUGUUGACAAGAAACUCAAUUCCAAUUUCCAUAUGGCGUAU .................((((((.(((.((((((......)))))).)))..................((((((.(((((......))))).))))))...................(((((((((((.((.....)).))))))))))).....))))))........................ (-44.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUACGCCAUAUGGAAAUUGGAAUUGAGUUUCUUGUCAACAACCUCAUAAAAUUAUUGUGAGAUUGUUGUCCGCGAAUUGAUUAAAUGAACUACUCGCCCGCUUUUGGACGGGUAGUUUAUAGAGGAAUAAUUUUUACUUCUCGCUGCAAGUAGCGAGGAGUUAAACUCUAAGAGAUUAAAUUAUA ...(((.....(((((((.......))))))).(.((((((.(((((((.....))))))).)))))).).)))..((((((...(((((((((((.(((....))).)))))))))))(((((...........(((((((((((....)))))))))))....)))))...))))))...... (-57.26) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 334 46 13 213 177 tfor:TF2275|5end_conserved_hypothetical_protein_2436934..2437164_POSITIVE 327 45 27 149 131 tfor:TF0962|5end_possible_amidohydrolase_1011593..1011823_POSITIVE 323 54 12 44 5 tfor:TF1259|5end_hypothetical_protein_1338549..1338779_POSITIVE 312 113 72 82 40 tfor:TF1928|5end_conserved_hypothetical_protein_2075529..2075759_POSITIVE 306 120 76 148 109 tfor:TF1255|5end_conserved_hypothetical_protein_1336635..1336865_POSITIVE 291 119 71 91 47 tfor:TF0816|5end_hypothetical_protein_874217..874447_POSITIVE 290 119 72 71 30 tfor:TF0302|5end_FKBP-type_peptidyl-prolyl_cis-trans_isomerase_328641..328871_POSITIVE 284 119 76 116 70 tfor:TF1464|5end_conserved_hypothetical_protein_1553467..1553697_POSITIVE 279 108 63 75 29 tfor:TF1188|5end_conserved_hypothetical_protein_1270156..1270386_POSITIVE 278 117 71 58 6 tfor:TF1063|5end_possible_amidase_enhancer_precursor;_sporulation-related_protein_1132671..1132901_POSITIVE 276 115 75 85 47 tfor:TF1144|5end_ABC_transporter,_ATP-binding/permease_component_1223527..1223757_POSITIVE 271 117 75 97 56 tfor:TF0406|5end_monofunctional_biosynthetic_peptidoglycan_transglycosylase_424245..424475_POSITIVE 270 114 72 50 7 tfor:TF2419|5end_conserved_hypothetical_protein;_possible_DNA_uptake-related_protein_2598358..2598588_POSITIVE 268 112 71 216 179 tfor:TF2776|5end_hypothetical_protein_2961470..2961700_POSITIVE 268 116 71 216 179 tfor:TF2775|5end_conserved_hypothetical_protein;_possible_mucoidy_inhibitor-related_protein_2959668..2959898_POSITIVE 268 97 59 169 138 tfor:TF0352|5end_transposase_element_371223..371453_POSITIVE 265 119 75 52 4 tfor:TF2255|5end_transfer_region-related_protein,_TraH_2427504..2427734_POSITIVE 265 101 69 47 16 tfor:TF0298|5end_dipeptidase_323127..323357_POSITIVE 263 103 61 194 155 tfor:TF2186|5end_outer_membrane_protein_2360291..2360521_POSITIVE 262 120 73 67 17 tfor:TF1741|5end_conserved_hypothetical_protein_1869304..1869534_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 327 45 27 149 131 tfor:TF0961|3end_translation_initiation_inhibitor,_endoribonuclease_activity_1011673..1011823_POSITIVE 312 113 72 75 33 tfor:TF1927|3end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_2075602..2075752_POSITIVE 306 120 76 138 99 tfor:TF1254|3end_conserved_hypothetical_protein;_possible_transcriptional_regulator_1336705..1336855_POSITIVE 295 98 61 112 58 tfor:TF1838|3end_tRNA/rRNA_methyltransferase_1988745..1988895_POSITIVE 290 119 72 108 67 tfor:TF0303|3end_conserved_hypothetical_protein_328758..328908_POSITIVE 284 119 76 77 31 tfor:TF1462|3end_erythronate-4-phosphate_dehydrogenase_1553508..1553658_POSITIVE 276 115 75 79 41 tfor:TF1143|3end_ABC_transporter,_ATP-binding/permease_component_1223601..1223751_POSITIVE 273 120 72 111 51 tfor:TF0001|3end_hypothetical_protein_158..308_POSITIVE 271 117 75 80 39 tfor:TF0405|3end_conserved_hypothetical_protein_424308..424458_POSITIVE 270 118 71 67 13 tfor:TF2272|3end_conserved_hypothetical_protein_2436514..2436664_POSITIVE 268 97 59 92 61 tfor:TF0351|3end_hypothetical_protein_371226..371376_POSITIVE 265 119 76 66 17 tfor:TF0242|3end_conserved_hypothetical_protein_274069..274219_POSITIVE 262 116 75 108 55 tfor:TF0959|3end_periplasmic_protease_1008540..1008690_POSITIVE 260 129 81 139 84 tfor:TF2723|3end_30S_ribosomal_protein_S20_2898020..2898170_POSITIVE 259 117 74 150 107 tfor:TF0889|3end_conjugative_transposon_protein,_TraO_940078..940228_POSITIVE 258 52 15 68 30 tfor:TF1291|3end_response_regulator_(fimR__protein)_1372647..1372797_POSITIVE 255 117 74 106 60 tfor:TF1088|3end_transposase_fragment_1158466..1158616_POSITIVE 255 180 150 131 101 tfor:TF0400|3end_conserved_hypothetical_protein_422128..422278_POSITIVE 252 99 76 57 30 tfor:TF2371|3end_conserved_hypothetical_protein_2537614..2537764_POSITIVE 252 99 57 147 107 tfor:TF1117|3end_conserved_hypothetical_protein_1189451..1189601_POSITIVE