Origin IGS: cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagcggtcagcaaacaaatcaacccctcaacaactaaacatctaaacccctcaacaattcaacatctcaacta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagttgagatgttgaattgttgaggggtttagatgtttagttgttgaggggttgatttgtttgctgaccgctgaacactgactgctgtaaaagccctgaaagggcgcattaattcagcccaatgtgtagcgaagcgaagcgttgggaaaacaggcgaccccctcagcggagggctgaaagcctgacataatttaattgttaattgttatgcgtggtacacgccgaatcatgtatttagaaaataaccattaacaattaaccattgaccattcatttcggcgttcgtccatgggcctcgggcg Mask Tandem Repeat Region ================================================ cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagcggtcagcaaacaaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaacta Find is-nt database================================================ Query_seq: TF2438:TF2439|TF2438:TF2439:hypothetical protein:conserved hypothetical protein:->->:2616218..2616519 302 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagcggtcagcaaacaaatcaacccctcaacaactaaacatctaaacccctcaacaattcaacatctcaacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF2438:TF2439|TF2438:TF2439:hypothetical protein:conserved hypothetical protein:->->:2616218..2616519 302 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagcggtcagcaaacaaatcaacccctcaacaactaaacatctaaacccctcaacaattcaacatctcaacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF2438:TF2439|TF2438:TF2439:hypothetical protein:conserved hypothetical protein:->->:2616218..2616519 302 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagcggtcagcaaacaaatcaacccctcaacaactaaacatctaaacccctcaacaattcaacatctcaacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagcggtcagcaaacaaatcaacccctcaacaactaaacatctaaacccctcaacaattcaacatctcaacta Predict ORF larger than 30AA ================================================ Protein_Len: 55 Strand: + Start: 107 End: 271 .......................................................................................................... M K L C Q A F S P P L R G S P V F P T L R F A T H W A E L M R P F R A F T A V S V Q R S A N K S T P Q Q L N I ............................... Protein_Len: 37 Strand: + Start: 190 End: 300 ............................................................................................................................................................................................. M N A P F Q G F Y S S Q C S A V S K Q I N P S T T K H L N P S T I Q H L N .. Protein_Len: 35 Strand: - Start: 121 End: 225 ........................................................................................................................ A K L G G S L P D G T K G V S R K A V C Q A S N I R G K L A K V A T M ............................................................................. cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagcggtcagcaaacaaatcaacccctcaacaactaaacatctaaacccctcaacaattcaacatctcaacta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagcggtcagcaaacaaatcaacccctcaacaactaaacatctaaacccctcaacaattcaacatctcaacta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 79 HP_score: -9.1 Tail_Score: -4.08767 Start: 198 End: 210 Full_Region: GGGCTGAATTAATGC GCCCT TTC AGGGC TTTTACAGCAGTCAG .....................................................................................................................................................................................................GCCCTTTCAGGGC............................................................................................ Find igs database================================================ Query_seq: TF2438:TF2439|TF2438:TF2439:hypothetical protein:conserved hypothetical protein:->->:2616218..2616519 302 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagcggtcagcaaacaaatcaacccctcaacaactaaacatctaaacccctcaacaattcaacatctcaacta Intra-Species Hit: Count: 18 Min: 1 Max: 239 Len: 239 Subject: tfor_TF2438_TF2439|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2616218,2616519]|302 HSP 1 e-value: 1.0E-133 bit: 474.0 Len: 239 Query Start:1 Query End:239 Subject Strand: POSITIVE Subject Start: 1 Subject End: 239 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagcggtcag............................................................... cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagcggtcag............................................................... Subject: tfor_TF2922_TF2923|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[3121599,3122307]|709 HSP 1 e-value: 5.0E-48 bit: 192.0 Len: 109 Query Start:3 Query End:111 Subject Strand: POSITIVE Subject Start: 311 Subject End: 419 ..cccgaggcccatggacgaacgccgaaatgaatggtcaatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaa............................................................................................................................................................................................... ..cccgaggcccatggacgaacaccgaaatgaatggtcaatggttaattgtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaa............................................................................................................................................................................................... HSP 2 e-value: 3.0E-9 bit: 63.9 Len: 55 Query Start:118 Query End:172 Subject Strand: POSITIVE Subject Start: 20 Subject End: 75 .....................................................................................................................tcaggctttcagccctccgctgagggggtcg-cctgttttcccaacgcttcgcttc.................................................................................................................................. .....................................................................................................................tcaggctttcagccctccgccgaggggggcgccctttttccccaacgcttcgcttc.................................................................................................................................. Subject: tfor_TF2998_TF2999|surface antigen BspA:conserved hypothetical protein|POSITIVE:POSITIVE|[3215212,3215705]|494 HSP 1 e-value: 1.0E-42 bit: 174.0 Len: 131 Query Start:95 Query End:225 Subject Strand: POSITIVE Subject Start: 186 Subject End: 317 ..............................................................................................taacaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcc-tgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcag............................................................................. ..............................................................................................taaccattaaccattgaattatgtcaggctttcagccctccgccgagggggtcgccctgttttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctcttacagctgtcag............................................................................. Subject: tfor_TF2500_TF2501|ABC transporter, ATP-binding protein:DNA mismatch repair protein|POSITIVE:POSITIVE|[2675363,2676419]|1057 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 121 Query Start:97 Query End:217 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 325 ................................................................................................acaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttaca..................................................................................... ................................................................................................acaattaacaactgaattacgtcaggctttcatccctccgccgaggggg-cgcctgttttcccaacgcttcgcttcgctctgcattgggctgaattaatgcgccctttcagggcttttaca..................................................................................... Subject: tfor_TF0018_TF0019|hypothetical protein:heat shock protein ClpB|POSITIVE:POSITIVE|[12152,12589]|438 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 118 Query Start:100 Query End:217 Subject Strand: POSITIVE Subject Start: 20 Subject End: 139 ...................................................................................................attaacaattaaattatgtcaggctttcagccctccgctgagggggt-cgcc-tgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttaca..................................................................................... ...................................................................................................attaacaactgaattacgtcaggctttcagccctccgctgagggggggcgcccttttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggctgttaca..................................................................................... Subject: tfor_TF1848_TF1850|conserved hypothetical protein:Na+/H+-exchanging protein|POSITIVE:POSITIVE|[1998005,1998681]|677 HSP 1 e-value: 6.0E-35 bit: 149.0 Len: 115 Query Start:97 Query End:211 Subject Strand: NEGATIVE Subject Start: 78 Subject End: 191 ................................................................................................acaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggct........................................................................................... ................................................................................................acaattaacaattgaattacgtcaggctttcagccctccgctgagggggtcg-ctctttccccaacacttcgctgcgctccacattgggctgaattaacgcgccctttcagggct........................................................................................... Subject: tfor_TF2815_TF2816|meso-diaminopimelate D-dehydrogenase:hypothetical protein|POSITIVE:POSITIVE|[3006481,3007064]|584 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 85 Query Start:149 Query End:233 Subject Strand: POSITIVE Subject Start: 228 Subject End: 312 ....................................................................................................................................................cctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcagtgttcagc..................................................................... ....................................................................................................................................................cctgttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggcttttaaagcagtcagcgttcagc..................................................................... HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 35 Query Start:100 Query End:134 Subject Strand: NEGATIVE Subject Start: 464 Subject End: 498 ...................................................................................................attaacaattaaattatgtcaggctttcagccctc........................................................................................................................................................................ ...................................................................................................attaacaattgaattatgtcaggctttcagccctc........................................................................................................................................................................ Subject: tfor_TF1762_TF1763|hypothetical protein:K+-dependent Na+/Ca+ exchanger related-protein|POSITIVE:POSITIVE|[1899709,1900545]|837 HSP 1 e-value: 4.0E-33 bit: 143.0 Len: 109 Query Start:111 Query End:219 Subject Strand: POSITIVE Subject Start: 4 Subject End: 116 ..............................................................................................................aattatgtcaggctttcagccctccgctgagggggt----cgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagc................................................................................... ..............................................................................................................aattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagc................................................................................... Subject: tfor_TF2920_TF2921|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3117231,3118637]|1407 HSP 1 e-value: 2.0E-31 bit: 137.0 Len: 101 Query Start:118 Query End:218 Subject Strand: POSITIVE Subject Start: 511 Subject End: 611 .....................................................................................................................tcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacag.................................................................................... .....................................................................................................................tcaggctttcagccctccgccgagggggtcgccctgtttcccaacgcttcgcttcgctgcacattggactgaattaacgcgccctttcagggctgttacag.................................................................................... HSP 2 e-value: 2.0E-25 bit: 117.0 Len: 100 Query Start:118 Query End:217 Subject Strand: POSITIVE Subject Start: 830 Subject End: 933 .....................................................................................................................tcaggctttcagccctccgctgagggggtcgcc----tgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttaca..................................................................................... .....................................................................................................................tcaggctttcagccctccgctgagggggttgccctgttttttttccaacgcttcgcttcgctgcgcattgggctgaattaatacgccctttcagggctcttaca..................................................................................... Subject: tfor_TF2914_TF2915|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3109704,3110561]|858 HSP 1 e-value: 2.0E-31 bit: 137.0 Len: 129 Query Start:97 Query End:225 Subject Strand: POSITIVE Subject Start: 337 Subject End: 460 ................................................................................................acaattaacaattaaattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagcagtcag............................................................................. ................................................................................................acaattaacaactgaattacgtcaggctttcagccctccgccgaggggggtgcctgttttcccaacgcttcgctgc-----acattgggctgaattaacgtgccctttcagggcttttacagcggtcag............................................................................. Subject: tfor_TF1841_TF1842|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1992328,1992710]|383 HSP 1 e-value: 4.0E-30 bit: 133.0 Len: 94 Query Start:118 Query End:211 Subject Strand: NEGATIVE Subject Start: 163 Subject End: 257 .....................................................................................................................tcaggctttcagccctccgctgagggggtcgcc-tgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggct........................................................................................... .....................................................................................................................tcaggctttcagccctccgccgagggggtcgcccttttttcccaacgcttcgctttgctgcacattgggctgaattaatacgccctttcagggct........................................................................................... HSP 2 e-value: 5.0E-8 bit: 60.0 Len: 34 Query Start:69 Query End:102 Subject Strand: POSITIVE Subject Start: 122 Subject End: 155 ....................................................................atacatgattcggcgtgtaccacgcataacaatt........................................................................................................................................................................................................ ....................................................................atacatgatttggcgtgtaccacgcataacaatt........................................................................................................................................................................................................ Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 2.0E-28 bit: 127.0 Len: 123 Query Start:95 Query End:217 Subject Strand: POSITIVE Subject Start: 747 Subject End: 870 ..............................................................................................taacaattaacaattaaattatgtcaggctttcagccctccgctgagggg-gtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttaca..................................................................................... ..............................................................................................taaccattaacaattgaattacgtcaggcttacagccctccgccgagatgcgatgccttttttcccaacgcttcgctgcgctccacattgggctgaattaatgcgccctttcagggctgttaca..................................................................................... HSP 2 e-value: 7.0E-7 bit: 56.0 Len: 28 Query Start:82 Query End:109 Subject Strand: POSITIVE Subject Start: 517 Subject End: 544 .................................................................................cgtgtaccacgcataacaattaacaatt................................................................................................................................................................................................. .................................................................................cgtgtaccacgcataacaattaacaatt................................................................................................................................................................................................. Subject: tfor_TF0467_TF0468|acetyltransferase-related protein:hypothetical protein|POSITIVE:POSITIVE|[486604,487068]|465 HSP 1 e-value: 4.0E-27 bit: 123.0 Len: 94 Query Start:118 Query End:211 Subject Strand: POSITIVE Subject Start: 281 Subject End: 374 .....................................................................................................................tcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggct........................................................................................... .....................................................................................................................tcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggct........................................................................................... HSP 2 e-value: 2.0E-19 bit: 97.6 Len: 73 Query Start:38 Query End:110 Subject Strand: POSITIVE Subject Start: 381 Subject End: 453 .....................................caatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaatta................................................................................................................................................................................................ .....................................caattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaatta................................................................................................................................................................................................ Subject: tfor_TF2921_TF2922|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[3118851,3119261]|411 HSP 1 e-value: 6.0E-23 bit: 109.0 Len: 59 Query Start:53 Query End:111 Subject Strand: POSITIVE Subject Start: 39 Subject End: 97 ....................................................aatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaa............................................................................................................................................................................................... ....................................................aatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaa............................................................................................................................................................................................... HSP 2 e-value: 1.0E-17 bit: 91.7 Len: 46 Query Start:1 Query End:46 Subject Strand: POSITIVE Subject Start: 1 Subject End: 46 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggtta................................................................................................................................................................................................................................................................ cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggtta................................................................................................................................................................................................................................................................ Subject: tfor_TF2665_TF2667|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2842296,2842534]|239 HSP 1 e-value: 2.0E-19 bit: 97.6 Len: 49 Query Start:57 Query End:105 Subject Strand: POSITIVE Subject Start: 164 Subject End: 212 ........................................................gttattttctaaatacatgattcggcgtgtaccacgcataacaattaac..................................................................................................................................................................................................... ........................................................gttattttctaaatacatgattcggcgtgtaccacgcataacaattaac..................................................................................................................................................................................................... HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 46 Query Start:1 Query End:46 Subject Strand: POSITIVE Subject Start: 122 Subject End: 167 cgcccgaggcccatggacgaacgccgaaatgaatggtcaatggtta................................................................................................................................................................................................................................................................ cgcccgaggcccaaggacgaacgctgaaatgaatggtcaattgtta................................................................................................................................................................................................................................................................ Subject: tfor_TF2477_TF2478|phosphatase:hypothetical protein|POSITIVE:POSITIVE|[2655026,2655514]|489 HSP 1 e-value: 5.0E-17 bit: 89.7 Len: 101 Query Start:111 Query End:211 Subject Strand: NEGATIVE Subject Start: 362 Subject End: 456 ..............................................................................................................aattatgtcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggct........................................................................................... ..............................................................................................................aattatgtcgggctttcagccctccgccgaggagattgcct-ttttcccaa-----cgcttcgctacgcattgggctgaattaatacgccctttcagggct........................................................................................... Subject: tfor_TF1585_TF1586|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1690671,1691110]|440 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 49 Query Start:118 Query End:166 Subject Strand: POSITIVE Subject Start: 8 Subject End: 56 .....................................................................................................................tcaggctttcagccctccgctgagggggtcgcctgttttcccaacgctt........................................................................................................................................ .....................................................................................................................tcaggctttcagccctccgctgagggggttgccttgtttcccaacgctt........................................................................................................................................ HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 74 Query Start:38 Query End:111 Subject Strand: POSITIVE Subject Start: 98 Subject End: 171 .....................................caatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaattaa............................................................................................................................................................................................... .....................................caattgttagttgttaatggttatttgccgggtacatgattcgacgtgtaccacgcataacaattgaccattaa............................................................................................................................................................................................... Subject: tfor_TF0827_TF0828|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[886980,887229]|250 HSP 1 e-value: 1.0E-11 bit: 71.9 Len: 48 Query Start:179 Query End:226 Subject Strand: NEGATIVE Subject Start: 128 Subject End: 175 ..................................................................................................................................................................................cattgggctgaattaatgcgccctttcagggcttttacagcagtcagt............................................................................ ..................................................................................................................................................................................cattgggctgaattattacgccctttcagggcttttacagcattcagt............................................................................ HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 39 Query Start:97 Query End:135 Subject Strand: NEGATIVE Subject Start: 209 Subject End: 247 ................................................................................................acaattaacaattaaattatgtcaggctttcagccctcc....................................................................................................................................................................... ................................................................................................acaattaacaattgaattacgtcaggctttcagccctcc....................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGCCCGAGGCCCAUGGACGAACGCCGAAAUGAAUGGUCAAUGGUUAAUUGUUAAUGGUUAUUUUCUAAAUACAUGAUUCGGCGUGUACCACGCAUAACAAUUAACAAUUAAAUUAUGUCAGGCUUUCAGCCCUCCGCUGAGGGGGUCGCCUGUUUUCCCAACGCUUCGCUUCGCUACACAUUGGGCUGAAUUAAUGCGCCCUUUCAGGGCUUUUACAGCAGUCAGUGUUCAGCGGUCAG ....((((((...(((..(((((.(((..((((.((((.((((((((((((((((.(((((........((((((......))))))......))))).)))))))))).))))))....)))))))).(((((....)))))..))).).))))..)))..))))))..(((((..(((((((.(((...(((...((((.....))))..)))...))))))))))..))))).... (-70.44) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUGACCGCUGAACACUGACUGCUGUAAAAGCCCUGAAAGGGCGCAUUAAUUCAGCCCAAUGUGUAGCGAAGCGAAGCGUUGGGAAAACAGGCGACCCCCUCAGCGGAGGGCUGAAAGCCUGACAUAAUUUAAUUGUUAAUUGUUAUGCGUGGUACACGCCGAAUCAUGUAUUUAGAAAAUAACCAUUAACAAUUAACCAUUGACCAUUCAUUUCGGCGUUCGUCCAUGGGCCUCGGGCG .....(((((.(((.((...((((.....((((.....)))).........)))).)).))).)))))..(((((.(((((..(...(((((....(((((....)))))......))))).......((((((((((((.((((((((((((.(.....).))))))).........))))).))))))))))))..............)..))))))))))......(((...))). (-71.24) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 965 46 1 97 52 tfor:TF2817|5end_hypothetical_protein_3007358..3007588_POSITIVE 941 170 121 183 135 tfor:TF2478|5end_hypothetical_protein_2655375..2655605_POSITIVE 876 219 171 184 136 tfor:TF2517|5end_hypothetical_protein_2695089..2695319_POSITIVE 867 210 161 122 73 tfor:TF0538|5end_hypothetical_protein_566891..567121_POSITIVE 867 210 161 115 66 tfor:TF0539|5end_hypothetical_protein_566884..567114_POSITIVE 821 199 153 99 53 tfor:TF1716|5end_hypothetical_protein_1837442..1837672_POSITIVE 804 218 172 196 150 tfor:TF1183|5end_hypothetical_protein_1268391..1268621_POSITIVE 776 220 172 208 160 tfor:TF0828|5end_hypothetical_protein_887090..887320_POSITIVE 712 170 121 66 16 tfor:TF3107|5end_hypothetical_protein_3338459..3338689_POSITIVE 706 210 161 115 65 tfor:TF0679|5end_hypothetical_protein_721155..721385_POSITIVE 706 210 161 63 13 tfor:TF0678|5end_hypothetical_protein_721103..721333_POSITIVE 695 218 172 200 154 tfor:TF1186|5end_hypothetical_protein_1269568..1269798_POSITIVE 693 169 121 218 169 tfor:TF1187|5end_hypothetical_protein_1269625..1269855_POSITIVE 692 169 127 46 4 tfor:TF0821|5end_hypothetical_protein_879879..880109_POSITIVE 691 209 161 206 152 tfor:TF1406|5end_transposase_1481758..1481988_POSITIVE 686 219 172 198 150 tfor:TF2824|5end_nucleoside-transporting_protein_nupG_3014701..3014931_POSITIVE 682 219 172 224 177 tfor:TF1184|5end_hypothetical_protein_1269004..1269234_POSITIVE 674 210 162 122 74 tfor:TF0534|5end_hypothetical_protein_559509..559739_POSITIVE 632 210 167 115 77 tfor:TF2191|5end_hypothetical_protein_2365934..2366164_POSITIVE 632 27 1 143 117 tfor:TF1182|5end_hypothetical_protein_1268565..1268795_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 817 210 161 81 32 tfor:TF2840|3end_hypothetical_protein_3031289..3031439_POSITIVE 712 170 121 135 85 tfor:TF3106|3end_hypothetical_protein_3338608..3338758_POSITIVE 705 169 121 114 65 tfor:TF2547|3end_hypothetical_protein_2730947..2731097_POSITIVE 695 218 172 115 69 tfor:TF1185|3end_hypothetical_protein_1269563..1269713_POSITIVE 682 219 172 78 31 tfor:TF1182|3end_hypothetical_protein_1268938..1269088_POSITIVE 674 210 162 52 4 tfor:TF0533|3end_hypothetical_protein_559519..559669_POSITIVE 632 27 1 143 117 tfor:TF1186|3end_hypothetical_protein_1269815..1269965_POSITIVE 632 98 51 135 88 tfor:TF0820|3end_hypothetical_protein_879942..880092_POSITIVE 560 147 101 112 63 tfor:TF2816|3end_hypothetical_protein_3007184..3007334_POSITIVE 548 170 121 142 91 tfor:TF1405|3end_conserved_hypothetical_protein_1481819..1481969_POSITIVE 512 160 118 132 88 tfor:TF1274|3end_hypothetical_protein_1357895..1358045_POSITIVE 499 160 112 80 29 tfor:TF0340|3end_hypothetical_protein_364257..364407_POSITIVE 484 170 122 61 13 tfor:TF0821|3end_hypothetical_protein_880195..880345_POSITIVE 484 170 122 80 32 tfor:TF0370|3end_hypothetical_protein_386317..386467_POSITIVE 476 39 2 146 115 tfor:TF3087|3end_conserved_hypothetical_protein_3322582..3322732_POSITIVE 459 146 104 149 110 tfor:TF0678|3end_hypothetical_protein_721335..721485_POSITIVE 410 170 128 76 32 tfor:TF1618|3end_conserved_hypothetical_protein_1733766..1733916_POSITIVE 403 170 128 83 25 tfor:TF1544|3end_possible_transcriptional_regulator_1651214..1651364_POSITIVE 389 179 133 67 13 tfor:TF1255|3end_conserved_hypothetical_protein_1338151..1338301_POSITIVE 388 169 121 86 37 tfor:TF2668|3end_hypothetical_protein_2842733..2842883_POSITIVE