Origin IGS: tagtcatcaaatattgcatgaaatttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaagaaaattatttattacgttttttttaacataaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctccccctcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttcttatgtctgccgaaagcgaagtacagtaacgagtagggcagtgtagcaatctccaaccgatatcttcatatcggaaaactgcatcaaacaatggacgcggatttcgaaaagcgaagagagtagaaaagaaaattaaaatgtaaatgacatggaagagataaaatttatcattgaaagtcaagatgttttaaaagaagaaatggcctcaatctttggaggatctgcggatgctcctcctgtaattcattgtaatagtaatggaatcgttaatattcctcctactaaagagaattagtagagcatgttataattagattagtgacgggctt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aagcccgtcactaatctaattataacatgctctactaattctctttagtaggaggaatattaacgattccattactattacaatgaattacaggaggagcatccgcagatcctccaaagattgaggccatttcttcttttaaaacatcttgactttcaatgataaattttatctcttccatgtcatttacattttaattttcttttctactctcttcgcttttcgaaatccgcgtccattgtttgatgcagttttccgatatgaagatatcggttggagattgctacactgccctactcgttactgtacttcgctttcggcagacataagaaactaggtgaaatatcttttttacaatttctgcagtgccttttccggcttgttggtgatcatacatcgtgaaaaatcgtgtttcctctgtgtttgtctctcttgcgagagcaaactgttctcagagttgtcaaagtatatatgccttaggcatttggttccttctaatccggcagttccttaagctgccctgttttcgtgttcttgtgttcaaataacgcacatctgcttgtgtcgaacaagtctctgtatgcaaatgcaagtgatcactatcaacttttaccttttagggggtaaagagtccgcagtgagggggaggtacctatgttcttccatgatttcctttcgttcggtttttacaccaatcgaagagatcatatatctcggttgcaaaataacagcatgtatcggattcatccaaattatttatgttaaaaaaaacgtaataaataattttcttgtgtaatcatggtcaggcacgccggcccgcaatccatcgcatcgggttgtttgacaaagggaaatttcatgcaatatttgatgacta Mask Tandem Repeat Region ================================================ tagtcatcaaatattgcatgaaatttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaagaaaattatttattacgttttttttaacataaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctccccctcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttcttatgtctgccgaaagcgaagtacagtaacgagtagggcagtgtagcaatctccaaccgatatcttcatatcggaaaactgcatcaaacaatggacgcggatttcgaaaagcgaagagagtagaaaagaaaattaaaatgtaaatgacatggaagagataaaatttatcattgaaagtcaagatgttttaaaagaagaaatggcctcaatctttggaggatctgcggatgctcctcctgtaattcattgtaatagtaatggaatcgttaatattcctcctactaaagagaattagtagagcatgttataattagattagtgacgggctt Find is-nt database================================================ Query_seq: TF2426:TF2427|TF2426:TF2427:conserved hypothetical protein; possible TonB receptor:arylsulfatase regulator (Fe-S oxidoreductase):->->:2605992..2606868 877 tagtcatcaaatattgcatgaaatttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaagaaaattatttattacgttttttttaacataaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctccccctcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttcttatgtctgccgaaagcgaagtacagtaacgagtagggcagtgtagcaatctccaaccgatatcttcatatcggaaaactgcatcaaacaatggacgcggatttcgaaaagcgaagagagtagaaaagaaaattaaaatgtaaatgacatggaagagataaaatttatcattgaaagtcaagatgttttaaaagaagaaatggcctcaatctttggaggatctgcggatgctcctcctgtaattcattgtaatagtaatggaatcgttaatattcctcctactaaagagaattagtagagcatgttataattagattagtgacgggctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF2426:TF2427|TF2426:TF2427:conserved hypothetical protein; possible TonB receptor:arylsulfatase regulator (Fe-S oxidoreductase):->->:2605992..2606868 877 tagtcatcaaatattgcatgaaatttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaagaaaattatttattacgttttttttaacataaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctccccctcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttcttatgtctgccgaaagcgaagtacagtaacgagtagggcagtgtagcaatctccaaccgatatcttcatatcggaaaactgcatcaaacaatggacgcggatttcgaaaagcgaagagagtagaaaagaaaattaaaatgtaaatgacatggaagagataaaatttatcattgaaagtcaagatgttttaaaagaagaaatggcctcaatctttggaggatctgcggatgctcctcctgtaattcattgtaatagtaatggaatcgttaatattcctcctactaaagagaattagtagagcatgttataattagattagtgacgggctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF2426:TF2427|TF2426:TF2427:conserved hypothetical protein; possible TonB receptor:arylsulfatase regulator (Fe-S oxidoreductase):->->:2605992..2606868 877 tagtcatcaaatattgcatgaaatttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaagaaaattatttattacgttttttttaacataaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctccccctcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttcttatgtctgccgaaagcgaagtacagtaacgagtagggcagtgtagcaatctccaaccgatatcttcatatcggaaaactgcatcaaacaatggacgcggatttcgaaaagcgaagagagtagaaaagaaaattaaaatgtaaatgacatggaagagataaaatttatcattgaaagtcaagatgttttaaaagaagaaatggcctcaatctttggaggatctgcggatgctcctcctgtaattcattgtaatagtaatggaatcgttaatattcctcctactaaagagaattagtagagcatgttataattagattagtgacgggctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tagtcatcaaatattgcatgaaatttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaagaaaattatttattacgttttttttaacataaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctccccctcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttcttatgtctgccgaaagcgaagtacagtaacgagtagggcagtgtagcaatctccaaccgatatcttcatatcggaaaactgcatcaaacaatggacgcggatttcgaaaagcgaagagagtagaaaagaaaattaaaatgtaaatgacatggaagagataaaatttatcattgaaagtcaagatgttttaaaagaagaaatggcctcaatctttggaggatctgcggatgctcctcctgtaattcattgtaatagtaatggaatcgttaatattcctcctactaaagagaattagtagagcatgttataattagattagtgacgggctt Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 6 End: 113 ..... M K Y C M K F P F V K Q P D A M D C G P A C L T M I T Q E N Y L L R F F ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 36 Strand: + Start: 11 End: 118 .......... M L H E I S L C Q T T R C D G L R A G V P D H D Y T R K L F I T F F L T ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 94 End: 222 ............................................................................................. M I Y Y V F F N I N N L D E S D T C C Y F A T E I Y D L F D W C K N R T K G N H G R T ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: + Start: 122 End: 265 ......................................................................................................................... M I W M N P I H A V I L Q P R Y M I S S I G V K T E R K E I M E E H R Y L P L T A D S L P P K R .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 286 End: 414 ............................................................................................................................................................................................................................................................................................. M H L H T E T C S T Q A D V R Y L N T R T R K Q G S L R N C R I R R N Q M P K A Y I L ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 407 End: 523 ...................................................................................................................................................................................................................................................................................................................................................................................................................... M Y F D N S E N S L L S Q E R Q T Q R K H D F S R C M I T N K P E K A L Q K L .................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 37 Strand: + Start: 481 End: 591 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M Y D H Q Q A G K G T A E I V K K I F H L V S Y V C R K R S T V T S R A V .............................................................................................................................................................................................................................................................................................. Protein_Len: 48 Strand: + Start: 697 End: 840 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M E E I K F I I E S Q D V L K E E M A S I F G G S A D A P P V I H C N S N G I V N I P P T K E N ..................................... Protein_Len: 33 Strand: - Start: 552 End: 650 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... T Q R F R L V T V L L A T Y C D G V S I K M D S F Q M L C H V R M ................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 544 End: 732 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... D A S L S T C Y R T P C H L L R W G I D E Y R F V A D F L P R P N R F A F L T S F F I L I Y I V H F L Y F K D N F T L M ................................................................................................................................................. Protein_Len: 42 Strand: - Start: 479 End: 604 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. S T H D G V L R F L C Q L F Q L F S I E G L K K H R G F A F Y L L S Y P L T A I E M ................................................................................................................................................................................................................................................................................. Protein_Len: 58 Strand: - Start: 367 End: 540 .............................................................................................................................................................................................................................................................................................................................................................................. P V A P N S P V L H R L C I Y K S L E S F L K S E C S L C V C L F C S K E R H I I V L L G S F A S C F N Y F L Y K M ................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 50 Strand: - Start: 333 End: 482 ............................................................................................................................................................................................................................................................................................................................................ K F V L V R F C P L K L F Q R I L L F W I G L A Y I S Q C S Q S C N A R A L S V F V S S V R N K V M ........................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 254 End: 349 ............................................................................................................................................................................................................................................................. G R F P L L Q Y H D S A N A Y L S K N S V L L H A N N S C L F M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 36 Strand: - Start: 116 End: 223 ................................................................................................................... C L Y N P H I R Y M S N N Q L R S I H D R R N T Y F G F S L F D H F F M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 85 End: 357 .................................................................................... E I P T F V S R F S I M S S C L Y R G R V A S E K G G L L Y F N I T I V Q M Q M C L S T R C L C I H T I Q V C S C S F M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 32 Strand: - Start: 3 End: 98 .. D D F I A H F K G K D F L G I R H I A P R R A Q G H N C L F I M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tagtcatcaaatattgcatgaaatttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaagaaaattatttattacgttttttttaacataaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctccccctcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttcttatgtctgccgaaagcgaagtacagtaacgagtagggcagtgtagcaatctccaaccgatatcttcatatcggaaaactgcatcaaacaatggacgcggatttcgaaaagcgaagagagtagaaaagaaaattaaaatgtaaatgacatggaagagataaaatttatcattgaaagtcaagatgttttaaaagaagaaatggcctcaatctttggaggatctgcggatgctcctcctgtaattcattgtaatagtaatggaatcgttaatattcctcctactaaagagaattagtagagcatgttataattagattagtgacgggctt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tagtcatcaaatattgcatgaaatttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaagaaaattatttattacgttttttttaacataaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctccccctcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttcttatgtctgccgaaagcgaagtacagtaacgagtagggcagtgtagcaatctccaaccgatatcttcatatcggaaaactgcatcaaacaatggacgcggatttcgaaaagcgaagagagtagaaaagaaaattaaaatgtaaatgacatggaagagataaaatttatcattgaaagtcaagatgttttaaaagaagaaatggcctcaatctttggaggatctgcggatgctcctcctgtaattcattgtaatagtaatggaatcgttaatattcctcctactaaagagaattagtagagcatgttataattagattagtgacgggctt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 52 HP_score: -4.3 Tail_Score: -3.22521 Start: 163 End: 177 Full_Region: TGTTATTTTGCAACC GAGAT ATATG ATCTC TTCGATTGGTGTAAA ..................................................................................................................................................................GAGATATATGATCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 51 HP_score: -4.8 Tail_Score: -2.98356 Start: 763 End: 785 Full_Region: ATGGCCTCAATCTTT GGAGGATC TGCGGAT GCTCCTCC TGTAATTCATTGTAA ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGATCTGCGGATGCTCCTCC............................................................................................ TransTerm Strand: - Conf: 40 HP_score: -2.3 Tail_Score: -2.62026 Start: 808 End: 824 Full_Region: ttctctttagtagga ggaat attaacg attcc attactattacaatg .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggaatattaacgattcc..................................................... Find igs database================================================ Query_seq: TF2426:TF2427|TF2426:TF2427:conserved hypothetical protein; possible TonB receptor:arylsulfatase regulator (Fe-S oxidoreductase):->->:2605992..2606868 877 tagtcatcaaatattgcatgaaatttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaagaaaattatttattacgttttttttaacataaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctccccctcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttcttatgtctgccgaaagcgaagtacagtaacgagtagggcagtgtagcaatctccaaccgatatcttcatatcggaaaactgcatcaaacaatggacgcggatttcgaaaagcgaagagagtagaaaagaaaattaaaatgtaaatgacatggaagagataaaatttatcattgaaagtcaagatgttttaaaagaagaaatggcctcaatctttggaggatctgcggatgctcctcctgtaattcattgtaatagtaatggaatcgttaatattcctcctactaaagagaattagtagagcatgttataattagattagtgacgggctt Intra-Species Hit: Count: 2 Min: 1 Max: 877 Len: 877 Subject: tfor_TF2426_TF2427|conserved hypothetical protein; possible TonB receptor:arylsulfatase regulator (Fe-S oxidoreductase)|POSITIVE:POSITIVE|[2605992,2606868]|877 HSP 1 e-value: 0.0 bit: 1691.0 Len: 877 Query Start:1 Query End:877 Subject Strand: POSITIVE Subject Start: 1 Subject End: 877 tagtcatcaaatattgcatgaaatttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaagaaaattatttattacgnnnnnnnnaacataaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctccccctcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttcttatgtctgccgaaagcgaagtacagtaacgagtagggcagtgtagcaatctccaaccgatatcttcatatcggaaaactgcatcaaacaatggacgcggatttcgaaaagcgaagagagtagaaaagaaaattaaaatgtaaatgacatggaagagataaaatttatcattgaaagtcaagatgttttaaaagaagaaatggcctcaatctttggaggatctgcggatgctcctcctgtaattcattgtaatagtaatggaatcgttaatattcctcctactaaagagaattagtagagcatgttataattagattagtgacgggctt tagtcatcaaatattgcatgaaatttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaagaaaattatttattacgttttttttaacataaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctccccctcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttcttatgtctgccgaaagcgaagtacagtaacgagtagggcagtgtagcaatctccaaccgatatcttcatatcggaaaactgcatcaaacaatggacgcggatttcgaaaagcgaagagagtagaaaagaaaattaaaatgtaaatgacatggaagagataaaatttatcattgaaagtcaagatgttttaaaagaagaaatggcctcaatctttggaggatctgcggatgctcctcctgtaattcattgtaatagtaatggaatcgttaatattcctcctactaaagagaattagtagagcatgttataattagattagtgacgggctt Subject: tfor_TF2423_TF2424|papain family cysteine protease:hypothetical protein|POSITIVE:POSITIVE|[2602558,2603171]|614 HSP 1 e-value: 0.0 bit: 716.0 Len: 432 Query Start:120 Query End:551 Subject Strand: POSITIVE Subject Start: 184 Subject End: 614 .......................................................................................................................aaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctcccc-ctcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttctta...................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................aaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtaccccccccctcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacga-ttttcacgatgtataatc-ccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta...................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-25 bit: 117.0 Len: 67 Query Start:23 Query End:89 Subject Strand: POSITIVE Subject Start: 87 Subject End: 153 ......................atttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................atttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGUCAUCAAAUAUUGCAUGAAAUUUCCCUUUGUCAAACAACCCGAUGCGAUGGAUUGCGGGCCGGCGUGCCUGACCAUGAUUACACAAGAAAAUUAUUUAUUACGUUUUUUUUAACAUAAAUAAUUUGGAUGAAUCCGAUACAUGCUGUUAUUUUGCAACCGAGAUAUAUGAUCUCUUCGAUUGGUGUAAAAACCGAACGAAAGGAAAUCAUGGAAGAACAUAGGUACCUCCCCCUCACUGCGGACUCUUUACCCCCUAAAAGGUAAAAGUUGAUAGUGAUCACUUGCAUUUGCAUACAGAGACUUGUUCGACACAAGCAGAUGUGCGUUAUUUGAACACAAGAACACGAAAACAGGGCAGCUUAAGGAACUGCCGGAUUAGAAGGAACCAAAUGCCUAAGGCAUAUAUACUUUGACAACUCUGAGAACAGUUUGCUCUCGCAAGAGAGACAAACACAGAGGAAACACGAUUUUUCACGAUGUAUGAUCACCAACAAGCCGGAAAAGGCACUGCAGAAAUUGUAAAAAAGAUAUUUCACCUAGUUUCUUAUGUCUGCCGAAAGCGAAGUACAGUAACGAGUAGGGCAGUGUAGCAAUCUCCAACCGAUAUCUUCAUAUCGGAAAACUGCAUCAAACAAUGGACGCGGAUUUCGAAAAGCGAAGAGAGUAGAAAAGAAAAUUAAAAUGUAAAUGACAUGGAAGAGAUAAAAUUUAUCAUUGAAAGUCAAGAUGUUUUAAAAGAAGAAAUGGCCUCAAUCUUUGGAGGAUCUGCGGAUGCUCCUCCUGUAAUUCAUUGUAAUAGUAAUGGAAUCGUUAAUAUUCCUCCUACUAAAGAGAAUUAGUAGAGCAUGUUAUAAUUAGAUUAGUGACGGGCUU ...((((((.....)).))))....................((((.(((((((((((((((((((((.((.....((((((((...((...(((((((((((...(((......))))))))))))))...))..(((......(((.........)))...(((((.....))))).(((.(((((......))))).)))..)))))))))))..((.((((.((.((((....((((((..((((.((((((........))))))))))..)))))).....(((....)))..(((((...(((((((.....(((....))).....)))))))........((((.....(((((.........))))).................(((((...)))))......))))....)))))......((((((((((....))))).)))))...))))......((....))...)).)))).)).....)).)))))....(((((((((((..............((((((..(((.((((((....(((((....((...((......))..))..)))))....((.........(((((((....)))))))....((((.((........)).))))..........)).)))))).))).........(((((((((...((((.....((.((((.....)))).))....))))..))))))))).....)))))).((((........)))).))))))).))))...)))))))))))))))).((.((((..(((...((((((..(((.((((((......))))))))).))))))..)))..)))).)).))))... (-219.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGCCCGUCACUAAUCUAAUUAUAACAUGCUCUACUAAUUCUCUUUAGUAGGAGGAAUAUUAACGAUUCCAUUACUAUUACAAUGAAUUACAGGAGGAGCAUCCGCAGAUCCUCCAAAGAUUGAGGCCAUUUCUUCUUUUAAAACAUCUUGACUUUCAAUGAUAAAUUUUAUCUCUUCCAUGUCAUUUACAUUUUAAUUUUCUUUUCUACUCUCUUCGCUUUUCGAAAUCCGCGUCCAUUGUUUGAUGCAGUUUUCCGAUAUGAAGAUAUCGGUUGGAGAUUGCUACACUGCCCUACUCGUUACUGUACUUCGCUUUCGGCAGACAUAAGAAACUAGGUGAAAUAUCUUUUUUACAAUUUCUGCAGUGCCUUUUCCGGCUUGUUGGUGAUCAUACAUCGUGAAAAAUCGUGUUUCCUCUGUGUUUGUCUCUCUUGCGAGAGCAAACUGUUCUCAGAGUUGUCAAAGUAUAUAUGCCUUAGGCAUUUGGUUCCUUCUAAUCCGGCAGUUCCUUAAGCUGCCCUGUUUUCGUGUUCUUGUGUUCAAAUAACGCACAUCUGCUUGUGUCGAACAAGUCUCUGUAUGCAAAUGCAAGUGAUCACUAUCAACUUUUACCUUUUAGGGGGUAAAGAGUCCGCAGUGAGGGGGAGGUACCUAUGUUCUUCCAUGAUUUCCUUUCGUUCGGUUUUUACACCAAUCGAAGAGAUCAUAUAUCUCGGUUGCAAAAUAACAGCAUGUAUCGGAUUCAUCCAAAUUAUUUAUGUUAAAAAAAACGUAAUAAAUAAUUUUCUUGUGUAAUCAUGGUCAGGCACGCCGGCCCGCAAUCCAUCGCAUCGGGUUGUUUGACAAAGGGAAAUUUCAUGCAAUAUUUGAUGACUA .....(((((...................((((..((((((....((((((..(((((.......)))))....))))))....))))))..))))..(((.(((.((((......((((...(((...................((((((.....))).)))......((((((((((..(((((((.((((.....................((((.....))))....((((.(((((((((((((((......((((((((((((..((((((((...((((...((((.....(((...(((((((.((....((((((((((.(((((...((((((......))))))..((((.((((.(((......))))))).((((......))))..))))......)))))...)))))))))).((((...((((((.....))))))))))..))..))))))).))).....))))..))))...)))))))).(((((((.....))))))).))))))))))))..((((((.....)))))).......))))))))))))).....)).)))).)))).)))))))((((....(((((((((((....))))).))))))....)))).)))))))))))))....))))..((((((((..((((...(((......)))...))))))))))))..))))))).))).........(((((....(((....))).......(((((((......))))))).....(((((((((.(((......((((.((....)))))).(((((((........)))))))...))).))))))))).)))))......))))).... (-215.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 499 78 31 190 136 tfor:TF2775|5end_conserved_hypothetical_protein;_possible_mucoidy_inhibitor-related_protein_2959668..2959898_POSITIVE 436 87 42 84 28 tfor:TF2267|5end_lysozyme-related_protein_2434869..2435099_POSITIVE 427 90 42 76 35 tfor:TF2038|5end_hypothetical_protein_2198978..2199208_POSITIVE 421 80 44 82 40 tfor:TF1485|5end_conserved_hypothetical_protein_1581871..1582101_POSITIVE 411 83 44 82 47 tfor:TF0394|5end_oxaloacetate_decarboxylase,_alpha_subunit_(pyruvate_carboxylase,_C-terminal_domain)_413268..413498_POSITIVE 406 81 42 63 10 tfor:TF3136|5end_Na+-translocating_NADH-quinone_reductase,_subunit_F_3369994..3370224_POSITIVE 398 80 31 55 11 tfor:TF0142|5end_subtilisin-like_serine_proteinase_149740..149970_POSITIVE 395 77 41 213 164 tfor:TF0201|5end_permease,_major_facilitator_superfamily_226041..226271_POSITIVE 388 787 742 181 116 tfor:TF1934|5end_hypothetical_protein_2083787..2084017_POSITIVE 388 630 581 172 124 tfor:TF1489|5end_argininosuccinate_lyase_1588904..1589134_POSITIVE 380 77 31 231 190 tfor:TF2820|5end_argininosuccinate_synthetase_3009876..3010106_POSITIVE 377 90 42 79 1 tfor:TF1277|5end_electron_transfer_flavoprotein,_alpha_subunit_1363012..1363242_POSITIVE 375 80 41 184 143 tfor:TF2578|5end_30S_ribosomal_protein_S11_2746698..2746928_POSITIVE 374 74 38 50 7 tfor:TF3014|5end_oxidoreductase,_short-chain_dehydrogenase/reductase_family_3237623..3237853_POSITIVE 371 72 31 57 6 tfor:TF0301|5end_outer_membrane_protein,_TonB_dependent_receptor_325457..325687_POSITIVE 368 78 44 197 161 tfor:TF1921|5end_hypothetical_protein_2070322..2070552_POSITIVE 367 75 43 202 155 tfor:TF1067|5end_conserved_hypothetical_protein_1136867..1137097_POSITIVE 363 480 431 120 69 tfor:TF2501|5end_DNA_mismatch_repair_protein_2676280..2676510_POSITIVE 363 72 44 47 16 tfor:TF1269|5end_acetyltransferase_1354567..1354797_POSITIVE 362 80 42 221 163 tfor:TF2695|5end_prephenate_dehydratase_2869618..2869848_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 436 87 42 84 28 tfor:TF2266|3end_transfer_region-related_protein,_TraQ_2434949..2435099_POSITIVE 419 68 31 149 107 tfor:TF2774|3end_2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_pyrophosphokinase_2959719..2959869_POSITIVE 406 81 42 63 10 tfor:TF3135|3end_hypothetical_protein_3370074..3370224_POSITIVE 402 593 555 65 25 tfor:TF1298|3end_possible_membrane_protein_1381197..1381347_POSITIVE 398 80 31 65 21 tfor:TF0141|3end_exodeoxyribonuclease_VII,_large_subunit_149830..149980_POSITIVE 371 72 31 61 10 tfor:TF0300|3end_hypothetical_protein_325541..325691_POSITIVE 370 76 31 150 107 tfor:TF2913|3end_conserved_hypothetical_protein_3109117..3109267_POSITIVE 368 78 44 39 3 tfor:TF1917|3end_hypothetical_protein_2070244..2070394_POSITIVE 367 75 43 113 66 tfor:TF1066|3end_hypothetical_protein_1136858..1137008_POSITIVE 364 80 44 57 19 tfor:TF1683|3end_conserved_hypothetical_protein_1796511..1796661_POSITIVE 363 79 38 51 6 tfor:TF1422|3end_GLCNAC_transferase_(UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide)-pyr_ophosphoryl-undecaprenol_N-acetylglucosamine_transferase)_1505823..1505973_POSITIVE 363 72 44 35 4 tfor:TF1268|3end_conserved_hypothetical_protein_1354635..1354785_POSITIVE 359 77 43 70 32 tfor:TF1794|3end_possible_glucose-1-phosphatase_1935816..1935966_POSITIVE 359 621 581 151 115 tfor:TF1488|3end_conserved_hypothetical_protein_1588975..1589125_POSITIVE 357 90 43 151 100 tfor:TF0174|3end_hypothetical_protein_185600..185750_POSITIVE 353 80 43 41 6 tfor:TF2897|3end_iron(III)_ABC_transporter,_permease_component_3087096..3087246_POSITIVE 353 80 31 72 23 tfor:TF2148|3end_conserved_hypothetical_protein_2322189..2322339_POSITIVE 353 74 44 69 42 tfor:TF0946|3end_iron(III)_ABC_transporter,_periplasmic_iron-binding_protein_990698..990848_POSITIVE 352 88 42 149 108 tfor:TF0744|3end_DNA_polymerase_III_subunit,_gamma/tau_792308..792458_POSITIVE 346 70 22 124 68 tfor:TF2003|3end_dihydrofolate_reductase_2156427..2156577_POSITIVE