Origin IGS: taacagagaagaacgtatgtttttcaacaacaaaaaatatggtatcatggaagcttaaataagagtcactcgtatagaaacatgccatttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaaaatgaatattgtattatgtttttttagtacaaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtaccccccccctcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacgattttcacgatgtataatcccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taagaaactaggtgaaatatcttttttacaatttctgcagcgccttttccggcttgttgggattatacatcgtgaaaatcgtgtttcttctgtgtttgtctctcttgcgagagcaaactgttctcagagttgtcaaagtatatatgccttaggcatttggttccttctaatccggcagttccttaagctgccctgttttcgtgttcttgtattcaaataacgcacatctgcttgtgtcgaacaagtttctgtatgcaaatgcaagtgatcactatcaacttttaccttttagggggtaaagagtctgcagtgagggggggggtacctatgttcttccatgatttcctttcgttcggtttttacaccagtcgaagagatcatatatctcggttacaaaacaacagcatgtatcggatttgtccaaattatttgtactaaaaaaacataatacaatattcattttgtgcaatcatggtcaggcacgccggcccgcagtccatcgcatcgggttgtttgacaaagggaaatggcatgtttctatacgagtgactcttatttaagcttccatgataccatattttttgttgttgaaaaacatacgttcttctctgtta Mask Tandem Repeat Region ================================================ taacagagaagaacgtatgtttttcaacaacaaaaaatatggtatcatggaagcttaaataagagtcactcgtatagaaacatgccatttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaaaatgaatattgtattatgtttttttagtacaaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtaccccccccctcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacgattttcacgatgtataatcccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta Find is-nt database================================================ Query_seq: TF2423:TF2424|TF2423:TF2424:papain family cysteine protease:hypothetical protein:->->:2602558..2603171 614 taacagagaagaacgtatgtttttcaacaacaaaaaatatggtatcatggaagcttaaataagagtcactcgtatagaaacatgccatttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaaaatgaatattgtattatgtttttttagtacaaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtaccccccccctcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacgattttcacgatgtataatcccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF2423:TF2424|TF2423:TF2424:papain family cysteine protease:hypothetical protein:->->:2602558..2603171 614 taacagagaagaacgtatgtttttcaacaacaaaaaatatggtatcatggaagcttaaataagagtcactcgtatagaaacatgccatttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaaaatgaatattgtattatgtttttttagtacaaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtaccccccccctcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacgattttcacgatgtataatcccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF2423:TF2424|TF2423:TF2424:papain family cysteine protease:hypothetical protein:->->:2602558..2603171 614 taacagagaagaacgtatgtttttcaacaacaaaaaatatggtatcatggaagcttaaataagagtcactcgtatagaaacatgccatttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaaaatgaatattgtattatgtttttttagtacaaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtaccccccccctcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacgattttcacgatgtataatcccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taacagagaagaacgtatgtttttcaacaacaaaaaatatggtatcatggaagcttaaataagagtcactcgtatagaaacatgccatttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaaaatgaatattgtattatgtttttttagtacaaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtaccccccccctcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacgattttcacgatgtataatcccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta Predict ORF larger than 30AA ================================================ Protein_Len: 47 Strand: + Start: 37 End: 177 .................................... M W Y H G S L N K S H S Y R N M P F P F V K Q P D A M D C G P A C L T M I A Q N E Y C I M F F ..................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 146 End: 286 ................................................................................................................................................. M H K M N I V L C F F S T N N L D K S D T C C C F V T E I Y D L F D W C K N R T K G N H G R T ........................................................................................................................................................................................................................................................................................................................................ Protein_Len: 30 Strand: + Start: 234 End: 323 ......................................................................................................................................................................................................................................... M I S S T G V K T E R K E I M E E H R Y P P P H C R L F T P ................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 351 End: 479 .............................................................................................................................................................................................................................................................................................................................................................. M H L H T E T C S T Q A D V R Y L N T R T R K Q G S L R N C R I R R N Q M P K A Y I L ....................................................................................................................................... Protein_Len: 39 Strand: + Start: 470 End: 586 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Y T L T T L R T V C S R K R D K H R R N T I F T M Y N P N K P E K A L Q K L ............................ Protein_Len: 46 Strand: - Start: 466 End: 603 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. P M Y V K V V R L V T Q E R L L S L C L L F V I K V I Y L G L L G S F A S C F N Y F L Y K M ........... Protein_Len: 60 Strand: - Start: 398 End: 598 ............................................................................................................................................................................................................................................................................................................................................................................................................. C P L K L F Q R I L L F W I G L A Y I S Q C S Q S C N A R A L S V F V S S V R N E R H I I G V L R F L R Q L F Q L F S M ................ Protein_Len: 32 Strand: - Start: 319 End: 414 .............................................................................................................................................................................................................................................................................................................................. G R F P L L Q Y H D S A N A Y L F K N S V L L H A N N S Y L F M ........................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 180 End: 422 ................................................................................................................................................................................... R S T Y F G F S L F D H F F M P V G G R V A S E K G G L L Y F N I T I V Q M Q M C F S T R C L C I H T I Q I C S C S F M ................................................................................................................................................................................................ Protein_Len: 36 Strand: - Start: 170 End: 277 ......................................................................................................................................................................... T K K T C I I Q V F G I C A T T K Y G L Y I I E E V P T F V S R F S I M ................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 34 Strand: - Start: 69 End: 170 .................................................................... E Y L F M G N G K T L C G S A I S Q P G A H R V M I A C F S Y Q I M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 58 Strand: - Start: 58 End: 231 ......................................................... I L T V R I S V H W K G K D F L G I R H V A P R R A Q G H N C L I F I T N H K K L V F L K S L D S V H Q Q K T V S M ............................................................................................................................................................................................................................................................................................................................................................................................... taacagagaagaacgtatgtttttcaacaacaaaaaatatggtatcatggaagcttaaataagagtcactcgtatagaaacatgccatttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaaaatgaatattgtattatgtttttttagtacaaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtaccccccccctcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacgattttcacgatgtataatcccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taacagagaagaacgtatgtttttcaacaacaaaaaatatggtatcatggaagcttaaataagagtcactcgtatagaaacatgccatttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaaaatgaatattgtattatgtttttttagtacaaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtaccccccccctcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacgattttcacgatgtataatcccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 71 HP_score: -6.8 Tail_Score: -4.02535 Start: 460 End: 470 Full_Region: ttgtcaaagtatata tgcc tta ggca tttggttccttctaa ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgccttaggca................................................................................................................................................ Find igs database================================================ Query_seq: TF2423:TF2424|TF2423:TF2424:papain family cysteine protease:hypothetical protein:->->:2602558..2603171 614 taacagagaagaacgtatgtttttcaacaacaaaaaatatggtatcatggaagcttaaataagagtcactcgtatagaaacatgccatttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaaaatgaatattgtattatgtttttttagtacaaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtaccccccccctcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacgattttcacgatgtataatcccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta Intra-Species Hit: Count: 2 Min: 1 Max: 614 Len: 614 Subject: tfor_TF2423_TF2424|papain family cysteine protease:hypothetical protein|POSITIVE:POSITIVE|[2602558,2603171]|614 HSP 1 e-value: 0.0 bit: 1122.0 Len: 614 Query Start:1 Query End:614 Subject Strand: POSITIVE Subject Start: 1 Subject End: 614 taacagagaagaacgtatgtttttcaacaacaaaaaatatggtatcatggaagcttaaataagagtcactcgtatagaaacatgccatttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaaaatgaatattgtattatgnnnnnnnagtacaaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtannnnnnnnntcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacgattttcacgatgtataatcccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta taacagagaagaacgtatgtttttcaacaacaaaaaatatggtatcatggaagcttaaataagagtcactcgtatagaaacatgccatttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaaaatgaatattgtattatgtttttttagtacaaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtaccccccccctcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacgattttcacgatgtataatcccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta Subject: tfor_TF2426_TF2427|conserved hypothetical protein; possible TonB receptor:arylsulfatase regulator (Fe-S oxidoreductase)|POSITIVE:POSITIVE|[2605992,2606868]|877 HSP 1 e-value: 0.0 bit: 676.0 Len: 431 Query Start:184 Query End:614 Subject Strand: POSITIVE Subject Start: 120 Subject End: 551 .......................................................................................................................................................................................aaataatttggacaaatccgatacatgctgttgttttgtaaccgagatatatgatctcttcgactggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtannnnnnnnntcactgcagactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagaaacttgttcgacacaagcagatgtgcgttatttgaatacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaagaaacacga-ttttcacgatgtataatc-ccaacaagccggaaaaggcgctgcagaaattgtaaaaaagatatttcacctagtttctta .......................................................................................................................................................................................aaataatttggatgaatccgatacatgctgttattttgcaaccgagatatatgatctcttcgattggtgtaaaaaccgaacgaaaggaaatcatggaagaacataggtacctccccc-tcactgcggactctttaccccctaaaaggtaaaagttgatagtgatcacttgcatttgcatacagagacttgttcgacacaagcagatgtgcgttatttgaacacaagaacacgaaaacagggcagcttaaggaactgccggattagaaggaaccaaatgcctaaggcatatatactttgacaactctgagaacagtttgctctcgcaagagagacaaacacagaggaaacacgatttttcacgatgtatgatcaccaacaagccggaaaaggcactgcagaaattgtaaaaaagatatttcacctagtttctta HSP 2 e-value: 5.0E-25 bit: 117.0 Len: 67 Query Start:87 Query End:153 Subject Strand: POSITIVE Subject Start: 23 Subject End: 89 ......................................................................................atttccctttgtcaaacaacccgatgcgatggactgcgggccggcgtgcctgaccatgattgcacaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................atttccctttgtcaaacaacccgatgcgatggattgcgggccggcgtgcctgaccatgattacacaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACAGAGAAGAACGUAUGUUUUUCAACAACAAAAAAUAUGGUAUCAUGGAAGCUUAAAUAAGAGUCACUCGUAUAGAAACAUGCCAUUUCCCUUUGUCAAACAACCCGAUGCGAUGGACUGCGGGCCGGCGUGCCUGACCAUGAUUGCACAAAAUGAAUAUUGUAUUAUGUUUUUUUAGUACAAAUAAUUUGGACAAAUCCGAUACAUGCUGUUGUUUUGUAACCGAGAUAUAUGAUCUCUUCGACUGGUGUAAAAACCGAACGAAAGGAAAUCAUGGAAGAACAUAGGUACCCCCCCCCUCACUGCAGACUCUUUACCCCCUAAAAGGUAAAAGUUGAUAGUGAUCACUUGCAUUUGCAUACAGAAACUUGUUCGACACAAGCAGAUGUGCGUUAUUUGAAUACAAGAACACGAAAACAGGGCAGCUUAAGGAACUGCCGGAUUAGAAGGAACCAAAUGCCUAAGGCAUAUAUACUUUGACAACUCUGAGAACAGUUUGCUCUCGCAAGAGAGACAAACACAGAAGAAACACGAUUUUCACGAUGUAUAAUCCCAACAAGCCGGAAAAGGCGCUGCAGAAAUUGUAAAAAAGAUAUUUCACCUAGUUUCUUA ...(((((......((((((((((..((.........((((....))))((..(((....)))..))....))..)))))))))).........((((((((....((.((((((((......(((..((.(((((((.((((((((..((((((..(...((((((((........)))))))).....(((((....))))).........)..))))))..(((((((.....))))).(((..((((......))))..)))..)).)))))))).......)))))))))..))).((((((..((((.((((((........))))))))))..)))))).......)).)))))).......(.(((((........((((((.....)))))).......))))).).......(((((.........))))).........))......(((((...)))))......)))))))))))))......((((((((((....))))).)))))....(((((((((((((((...(((.....))).......(((......)))......))))))))......((....)).....))))))). (-150.36) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGAAACUAGGUGAAAUAUCUUUUUUACAAUUUCUGCAGCGCCUUUUCCGGCUUGUUGGGAUUAUACAUCGUGAAAAUCGUGUUUCUUCUGUGUUUGUCUCUCUUGCGAGAGCAAACUGUUCUCAGAGUUGUCAAAGUAUAUAUGCCUUAGGCAUUUGGUUCCUUCUAAUCCGGCAGUUCCUUAAGCUGCCCUGUUUUCGUGUUCUUGUAUUCAAAUAACGCACAUCUGCUUGUGUCGAACAAGUUUCUGUAUGCAAAUGCAAGUGAUCACUAUCAACUUUUACCUUUUAGGGGGUAAAGAGUCUGCAGUGAGGGGGGGGGUACCUAUGUUCUUCCAUGAUUUCCUUUCGUUCGGUUUUUACACCAGUCGAAGAGAUCAUAUAUCUCGGUUACAAAACAACAGCAUGUAUCGGAUUUGUCCAAAUUAUUUGUACUAAAAAAACAUAAUACAAUAUUCAUUUUGUGCAAUCAUGGUCAGGCACGCCGGCCCGCAGUCCAUCGCAUCGGGUUGUUUGACAAAGGGAAAUGGCAUGUUUCUAUACGAGUGACUCUUAUUUAAGCUUCCAUGAUACCAUAUUUUUUGUUGUUGAAAAACAUACGUUCUUCUCUGUUA ..((((..((((.(((((((..((((((((((..(.((((.(((......))))))).)..))).......)))))))..))))))).)))).(((((.(((((....))))))))))..))))(((((........((((....(((...(((((..((((((((((..((.(((((((.....)))))))((((....(((..((((((((.......((.(((...((((((.....))))))...))).))..))))))))....))).....(((((((((((....))))).))))))..)))).))..))))))).))).))))).....((((((((..((((...(((......)))...)))))))))))).......))).......((((((((.((((.((..(((..((((....(((((.((........)).))))).......))))..)))((((((..((((..((((.((((((..((........))..)))........)))...))))..(((.((.....)).)))..........))))))))))..))))))....))))))))......))))......)))))... (-156.05) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 469 142 105 190 142 tfor:TF2775|5end_conserved_hypothetical_protein;_possible_mucoidy_inhibitor-related_protein_2959668..2959898_POSITIVE 445 140 91 52 6 tfor:TF0142|5end_subtilisin-like_serine_proteinase_149740..149970_POSITIVE 438 148 108 83 47 tfor:TF0394|5end_oxaloacetate_decarboxylase,_alpha_subunit_(pyruvate_carboxylase,_C-terminal_domain)_413268..413498_POSITIVE 423 138 97 69 26 tfor:TF2038|5end_hypothetical_protein_2198978..2199208_POSITIVE 421 144 108 82 40 tfor:TF1485|5end_conserved_hypothetical_protein_1581871..1582101_POSITIVE 418 138 92 50 1 tfor:TF3014|5end_oxidoreductase,_short-chain_dehydrogenase/reductase_family_3237623..3237853_POSITIVE 418 140 91 221 171 tfor:TF0970|5end_2-keto-3-deoxygluconate_kinase_1020396..1020626_POSITIVE 412 149 107 38 1 tfor:TF1313|5end_conserved_hypothetical_protein_1388880..1389110_POSITIVE 406 150 106 83 28 tfor:TF2267|5end_lysozyme-related_protein_2434869..2435099_POSITIVE 400 149 109 175 135 tfor:TF2711|5end_hemolysis_secretion_protein_2884543..2884773_POSITIVE 399 136 94 57 5 tfor:TF0301|5end_outer_membrane_protein,_TonB_dependent_receptor_325457..325687_POSITIVE 397 150 106 75 19 tfor:TF1252|5end_phosphofructokinase;_pyrophosphate-fructose_6-phosphate_1-phosphotransferase_(probable_beta_subunit)_1334361..1334591_POSITIVE 395 141 105 213 164 tfor:TF0201|5end_permease,_major_facilitator_superfamily_226041..226271_POSITIVE 384 159 113 221 171 tfor:TF0175|5end_hypothetical_protein_185585..185815_POSITIVE 383 150 105 192 143 tfor:TF2578|5end_30S_ribosomal_protein_S11_2746698..2746928_POSITIVE 382 148 104 65 12 tfor:TF1215|5end_haloacid_dehalogenase-like_hydrolase_1302510..1302740_POSITIVE 379 150 106 73 18 tfor:TF3028|5end_1-deoxy-d-xylulose-5-phosphate_reductoisomerase_3251642..3251872_POSITIVE 376 148 106 227 163 tfor:TF2695|5end_prephenate_dehydratase_2869618..2869848_POSITIVE 375 138 92 209 155 tfor:TF2186|5end_outer_membrane_protein_2360291..2360521_POSITIVE 374 144 106 86 41 tfor:TF2898|5end_conserved_hypothetical_protein_3087061..3087291_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 445 140 91 62 16 tfor:TF0141|3end_exodeoxyribonuclease_VII,_large_subunit_149830..149980_POSITIVE 406 150 106 83 28 tfor:TF2266|3end_transfer_region-related_protein,_TraQ_2434949..2435099_POSITIVE 399 136 94 61 9 tfor:TF0300|3end_hypothetical_protein_325541..325691_POSITIVE 397 150 106 57 1 tfor:TF1251|3end_riboflavin_synthase,_alpha_subunit_1334423..1334573_POSITIVE 389 132 105 149 113 tfor:TF2774|3end_2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_pyrophosphokinase_2959719..2959869_POSITIVE 376 150 102 100 31 tfor:TF2900|3end_conserved_hypothetical_protein_3090029..3090179_POSITIVE 374 149 108 51 3 tfor:TF1917|3end_hypothetical_protein_2070244..2070394_POSITIVE 370 145 106 149 116 tfor:TF3087|3end_conserved_hypothetical_protein_3322582..3322732_POSITIVE 370 150 107 71 14 tfor:TF0776|3end_ABC_transporter,_permease_component_826173..826323_POSITIVE 370 150 107 61 13 tfor:TF0612|3end_conserved_hypothetical_protein_646137..646287_POSITIVE 368 136 108 35 4 tfor:TF1268|3end_conserved_hypothetical_protein_1354635..1354785_POSITIVE 368 149 107 122 66 tfor:TF1066|3end_hypothetical_protein_1136858..1137008_POSITIVE 367 131 106 64 36 tfor:TF0385|3end_conserved_hypothetical_protein_406980..407130_POSITIVE 365 148 102 56 6 tfor:TF1422|3end_GLCNAC_transferase_(UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide)-pyr_ophosphoryl-undecaprenol_N-acetylglucosamine_transferase)_1505823..1505973_POSITIVE 363 144 107 41 3 tfor:TF2897|3end_iron(III)_ABC_transporter,_permease_component_3087096..3087246_POSITIVE 360 153 111 55 9 tfor:TF2275|3end_conserved_hypothetical_protein_2438300..2438450_POSITIVE 358 150 107 147 100 tfor:TF0174|3end_hypothetical_protein_185600..185750_POSITIVE 357 128 84 151 107 tfor:TF2342|3end_glutathione_peroxidase_2506639..2506789_POSITIVE 357 150 108 84 36 tfor:TF0744|3end_DNA_polymerase_III_subunit,_gamma/tau_792308..792458_POSITIVE 355 145 106 63 10 tfor:TF3135|3end_hypothetical_protein_3370074..3370224_POSITIVE