Origin IGS: taagtttaaggccatattccccttcgagtgtttagatatttagttgttggttagttagcgttcagcagccagcgtaatttaattgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgaccattgttcaaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttctca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgtttaactgttgtgctgttgaatggttgagttgtttgattgttggatggaagctgatggctgattgctgaatactgaccgataaattacatcaggcttacagccctccgaacaaggtgggacgggaccccacccttacgggatggggctgaaacagaacgggctttcagcccttgtatgcccttggggcgtttgaacaatggtcaatggttatacgtgtggtacagaccaaatcatgtactctgcatgataattgacaattaaattacgctggctgctgaacgctaactaaccaacaactaaatatctaaacactcgaaggggaatatggccttaaactta Mask Tandem Repeat Region ================================================ taagtttaaggccatattccccttcgagtgtttagatatttagttgttggttagttagcgttcagcagccagcgtaatttaattgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgaccattgttcaaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttctca Find is-nt database================================================ Query_seq: TF2161:TF2162|TF2161:TF2162:conserved hypothetical protein:thermolysin precursor:->->:2338423..2338808 386 taagtttaaggccatattccccttcgagtgtttagatatttagttgttggttagttagcgttcagcagccagcgtaatttaattgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgaccattgttcaaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttctca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF2161:TF2162|TF2161:TF2162:conserved hypothetical protein:thermolysin precursor:->->:2338423..2338808 386 taagtttaaggccatattccccttcgagtgtttagatatttagttgttggttagttagcgttcagcagccagcgtaatttaattgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgaccattgttcaaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttctca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF2161:TF2162|TF2161:TF2162:conserved hypothetical protein:thermolysin precursor:->->:2338423..2338808 386 taagtttaaggccatattccccttcgagtgtttagatatttagttgttggttagttagcgttcagcagccagcgtaatttaattgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgaccattgttcaaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttctca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taagtttaaggccatattccccttcgagtgtttagatatttagttgttggttagttagcgttcagcagccagcgtaatttaattgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgaccattgttcaaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttctca Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 143 End: 253 .............................................................................................................................................. M F K R P K G I Q G L K A R S V S A P S R K G G V P S H L V R R A V S L M ..................................................................................................................................... Protein_Len: 36 Strand: + Start: 260 End: 367 ................................................................................................................................................................................................................................................................... M G Q Y S A I S H Q L P S N N Q T T Q P F N S T T V K R P K G I T F H F ................... Protein_Len: 39 Strand: + Start: 270 End: 386 ............................................................................................................................................................................................................................................................................. M Q Q S A I S F H P T I K Q L N H S T A Q Q L N A R R A S L F T F S F S L F S Protein_Len: 30 Strand: - Start: 275 End: 364 .................................................................................................................................................................................................................................................................................. C D A M L K W G V I L C S L W E V A C C N F A R L A D S K M ...................... Protein_Len: 36 Strand: - Start: 150 End: 257 ..................................................................................................................................................... V G W P C V L A S L G N Q K L G M G Y P H P G T G G Q E S P Q L G S T M ................................................................................................................................. Protein_Len: 60 Strand: - Start: 82 End: 261 ................................................................................. N D I I M C L V H N P R Y W V Y L W Q G N N L R G L P M C P S F A R E T E A G D R L P P T G D W R T R L A T L R I Y N M ............................................................................................................................. taagtttaaggccatattccccttcgagtgtttagatatttagttgttggttagttagcgttcagcagccagcgtaatttaattgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgaccattgttcaaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttctca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taagtttaaggccatattccccttcgagtgtttagatatttagttgttggttagttagcgttcagcagccagcgtaatttaattgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgaccattgttcaaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttctca Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 72 HP_score: -9.1 Tail_Score: -3.52192 Start: 170 End: 182 Full_Region: gggctgaaacagaac gggct ttc agccc ttgtatgcccttggg .........................................................................................................................................................................gggctttcagccc............................................................................................................................................................................................................ TransTerm Strand: + Conf: 72 HP_score: -8.8 Tail_Score: -3.61715 Start: 209 End: 227 Full_Region: GCCCCATCCCGTAAG GGTGGGGT CCC GTCCCACC TTGTTCGGAGGGCTG ................................................................................................................................................................................................................GGTGGGGTCCCGTCCCACC............................................................................................................................................................... Find igs database================================================ Query_seq: TF2161:TF2162|TF2161:TF2162:conserved hypothetical protein:thermolysin precursor:->->:2338423..2338808 386 taagtttaaggccatattccccttcgagtgtttagatatttagttgttggttagttagcgttcagcagccagcgtaatttaattgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgaccattgttcaaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttctca Intra-Species Hit: Count: 10 Min: 1 Max: 386 Len: 386 Subject: tfor_TF2161_TF2162|conserved hypothetical protein:thermolysin precursor|POSITIVE:POSITIVE|[2338423,2338808]|386 HSP 1 e-value: 0.0 bit: 765.0 Len: 386 Query Start:1 Query End:386 Subject Strand: POSITIVE Subject Start: 1 Subject End: 386 taagtttaaggccatattccccttcgagtgtttagatatttagttgttggttagttagcgttcagcagccagcgtaatttaattgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgaccattgttcaaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttctca taagtttaaggccatattccccttcgagtgtttagatatttagttgttggttagttagcgttcagcagccagcgtaatttaattgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgaccattgttcaaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttctca Subject: tfor_TF2166_TF2167|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2342423,2342725]|303 HSP 1 e-value: 1.0E-86 bit: 321.0 Len: 216 Query Start:168 Query End:383 Subject Strand: POSITIVE Subject Start: 87 Subject End: 295 .......................................................................................................................................................................aagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttc... .......................................................................................................................................................................aagggctgaaagccagatatatttcagccccatcccgtaagggtggggtcccgtccaaccttgttcggaaggctgtaagcctgatgtaatttatcggtcagtattcag-------ccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttcgtttttcacttttc... Subject: tfor_TF0346_TF0347|hypothetical protein:possible serine protease|POSITIVE:POSITIVE|[367377,367681]|305 HSP 1 e-value: 1.0E-67 bit: 258.0 Len: 216 Query Start:168 Query End:383 Subject Strand: POSITIVE Subject Start: 87 Subject End: 295 .......................................................................................................................................................................aagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttc... .......................................................................................................................................................................aagggctgcaaacccgatatatttcagccccatcccgtaagggtggggtcccgtccaaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtat-------tcagccatcagcttccatccaacaatcaaacaactcaacagttcaacaattcaacaattcaacgcccgaagggcatcacttttcacttttcgtttctcacttttc... Subject: tfor_TF2172_TF2174|hypothetical protein:possible endopeptidase precursor|POSITIVE:POSITIVE|[2346196,2346431]|236 HSP 1 e-value: 1.0E-58 bit: 228.0 Len: 219 Query Start:168 Query End:386 Subject Strand: POSITIVE Subject Start: 15 Subject End: 236 .......................................................................................................................................................................aagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaat--ttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaac-cattcaacagcacaacagttaaacgcccgaagggcatcacttttcacttttagtttttcacttttctca .......................................................................................................................................................................aagggctgcaagccagatatatttcagccccatcccgtaagggtggggtcccgtccaaccttgttcggagggctgtaagcctgacatgatcgttagcgatcagtattcagtattcagccatcagcttccatccaacaatcaaacaactcaacaaactcaacatttcaacatccaaacgcccgaagggcatcacttttcacttttagttttttacttttctca Subject: tfor_TF0366_TF0367|hypothetical protein:eukaryotic-like metalloproteinase|POSITIVE:POSITIVE|[383872,384146]|275 HSP 1 e-value: 4.0E-58 bit: 226.0 Len: 196 Query Start:168 Query End:363 Subject Strand: POSITIVE Subject Start: 87 Subject End: 275 .......................................................................................................................................................................aagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttca....................... .......................................................................................................................................................................aagggctgaaagccagatatatttcagccccatcccgtaagggtggggtcccgtccaaccttgttcggaaggctgtaagcctgatgtaatttatcggtcagtat-------tcagccatcagcttccatccaacaatcaaacaactcaacagttcaacaattcaacaactcaacgcccgaagggcatcacttttca....................... Subject: tfor_TF0362_TF0364|hypothetical protein:ysyl endopeptidase|POSITIVE:POSITIVE|[380260,380534]|275 HSP 1 e-value: 4.0E-58 bit: 226.0 Len: 196 Query Start:168 Query End:363 Subject Strand: POSITIVE Subject Start: 87 Subject End: 275 .......................................................................................................................................................................aagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggtcccgtcccaccttgttcggagggctgtaagcctgatgtaatttatcggtcagtattcagcaatcagccatcagcttccatccaacaatcaaacaactcaaccattcaacagcacaacagttaaacgcccgaagggcatcacttttca....................... .......................................................................................................................................................................aagggctgaaagccagatatatttcagccccatcccgtaagggtggggtcccgtccaaccttgttcggaaggctgtaagcctgatgtaatttatcggtcagtat-------tcagccatcagcttccatccaacaatcaaacaactcaacagttcaacaattcaacaactcaacgcccgaagggcatcacttttca....................... Subject: tfor_TF1715_TF1716|thermolysin; zinc metalloprotease:hypothetical protein|POSITIVE:POSITIVE|[1837263,1837581]|319 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 87 Query Start:130 Query End:216 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 229 .................................................................................................................................taaccattgaccattgttcaaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtggggt.......................................................................................................................................................................... .................................................................................................................................taaccattgaccattgttcaaacgccccaagggcatacaagggctgtaagcccgttttatttcagccccatcccgcaagggtggggt.......................................................................................................................................................................... HSP 2 e-value: 1.0E-18 bit: 95.6 Len: 48 Query Start:339 Query End:386 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 48 ..................................................................................................................................................................................................................................................................................................................................................aacgcccgaagggcatcacttttcacttttagtttttcacttttctca ..................................................................................................................................................................................................................................................................................................................................................aacgcccgaagggcatcacttttcacttttagtttttcacttttctca HSP 3 e-value: 4.0E-6 bit: 54.0 Len: 58 Query Start:83 Query End:140 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 288 ..................................................................................ttgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgac...................................................................................................................................................................................................................................................... ..................................................................................ttgttaattgtcatgtagggtacatgatttggtctgtac--cacgcataaccattgac...................................................................................................................................................................................................................................................... Subject: tfor_TF0029_TF0030|hypothetical protein:N-acetylneuraminate lyase|POSITIVE:POSITIVE|[25123,25909]|787 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 136 Query Start:150 Query End:285 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 278 .....................................................................................................................................................aacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatcccgtaagggtgggg--tcccgtccc--accttgttcggagggctgtaagcctgatgtaat--ttatcggtcagtattcagcaatcagcca..................................................................................................... .....................................................................................................................................................aacgcccgcagggcatacaagggctggaagcccgaattatttcagccccatcccgtaagggtgggggatccatgcccataccttggttagagggctgtaagcctgatataatcgttagcggtcagtattcagcggtcagcca..................................................................................................... Subject: tfor_TF0358_TF0359|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[376365,377082]|718 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 48 Query Start:169 Query End:216 Subject Strand: POSITIVE Subject Start: 529 Subject End: 576 ........................................................................................................................................................................agggctgaaagcccgttctgtttcagccccatcccgtaagggtggggt.......................................................................................................................................................................... ........................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggggt.......................................................................................................................................................................... HSP 2 e-value: 6.0E-14 bit: 79.8 Len: 48 Query Start:339 Query End:386 Subject Strand: POSITIVE Subject Start: 671 Subject End: 718 ..................................................................................................................................................................................................................................................................................................................................................aacgcccgaagggcatcacttttcacttttagtttttcacttttctca ..................................................................................................................................................................................................................................................................................................................................................aacgcccgaagagcatcacttttcacttttcgtttttcacttttctca Subject: tfor_TF1535_TF1537|possible outer membrane receptor protein:hypothetical protein|POSITIVE:POSITIVE|[1642270,1643045]|776 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 55 Query Start:149 Query End:203 Subject Strand: POSITIVE Subject Start: 396 Subject End: 450 ....................................................................................................................................................aaacgccccaagggcatacaagggctgaaagcccgttctgtttcagccccatccc....................................................................................................................................................................................... ....................................................................................................................................................aaacgccccaggggcatacatgggctgaaagtccgttctatttcagccccatccc....................................................................................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 62 Query Start:79 Query End:140 Subject Strand: POSITIVE Subject Start: 286 Subject End: 345 ..............................................................................ttaattgtcaattatcatgcagagtacatgatttggtctgtaccacacgtataaccattgac...................................................................................................................................................................................................................................................... ..............................................................................ttaattgttaattgtcatgcagggtacatgattggggctgtaccacgc--ataaccattgac...................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGUUUAAGGCCAUAUUCCCCUUCGAGUGUUUAGAUAUUUAGUUGUUGGUUAGUUAGCGUUCAGCAGCCAGCGUAAUUUAAUUGUCAAUUAUCAUGCAGAGUACAUGAUUUGGUCUGUACCACACGUAUAACCAUUGACCAUUGUUCAAACGCCCCAAGGGCAUACAAGGGCUGAAAGCCCGUUCUGUUUCAGCCCCAUCCCGUAAGGGUGGGGUCCCGUCCCACCUUGUUCGGAGGGCUGUAAGCCUGAUGUAAUUUAUCGGUCAGUAUUCAGCAAUCAGCCAUCAGCUUCCAUCCAACAAUCAAACAACUCAACCAUUCAACAGCACAACAGUUAAACGCCCGAAGGGCAUCACUUUUCACUUUUAGUUUUUCACUUUUCUCA .((((..((((........(((((((.((((((((.......((((((((((((((.(((((........)))))..(((.(((((.........(((.((((((......((((.(((((.....)))))))))..((((...........((((...)))).((((.(((((...(((((...........((((((.(((....))))))))).(((..(......)..))).)))))...)))))..)))).......)))).)))))).)))...(((.....)))........))))).))).)))).)))))....))))).......)))))))).))))))).....))))..)))).................... (-111.86) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAGAAAAGUGAAAAACUAAAAGUGAAAAGUGAUGCCCUUCGGGCGUUUAACUGUUGUGCUGUUGAAUGGUUGAGUUGUUUGAUUGUUGGAUGGAAGCUGAUGGCUGAUUGCUGAAUACUGACCGAUAAAUUACAUCAGGCUUACAGCCCUCCGAACAAGGUGGGACGGGACCCCACCCUUACGGGAUGGGGCUGAAACAGAACGGGCUUUCAGCCCUUGUAUGCCCUUGGGGCGUUUGAACAAUGGUCAAUGGUUAUACGUGUGGUACAGACCAAAUCAUGUACUCUGCAUGAUAAUUGACAAUUAAAUUACGCUGGCUGCUGAACGCUAACUAACCAACAACUAAAUAUCUAAACACUCGAAGGGGAAUAUGGCCUUAAACUUA .......(((.....)))..((((..((.((.((((((((((((.(((((..((((.....((((..((((((.((.((((((((((..(...........((((((((..(..(((..((((((......((((.........((((((((((.....((((((.......))))))....)))...))))))).........((((.....)))).)))).((((...))))..........))))))...)))......)..)).))).))).(((((((.....)))))))..)..)))))))))).))..((((........))))..)))))).))))..))))..))))).)))))))))...))).)).))..)))). (-116.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 897 179 131 231 183 tfor:TF1716|5end_hypothetical_protein_1837442..1837672_POSITIVE 893 220 171 222 173 tfor:TF0822|5end_hypothetical_protein_880487..880717_POSITIVE 893 220 171 222 173 tfor:TF0821|5end_hypothetical_protein_879879..880109_POSITIVE 832 240 191 83 28 tfor:TF2547|5end_hypothetical_protein_2730664..2730894_POSITIVE 830 239 191 231 179 tfor:TF0678|5end_hypothetical_protein_721103..721333_POSITIVE 796 218 171 53 5 tfor:TF2840|5end_hypothetical_protein_3031060..3031290_POSITIVE 594 148 102 205 161 tfor:TF0679|5end_hypothetical_protein_721155..721385_POSITIVE 584 270 225 231 182 tfor:TF1655|5end_long-chain-fatty-acid-CoA_ligase_1769279..1769509_POSITIVE 577 290 241 218 162 tfor:TF3105|5end_hypothetical_protein_3338068..3338298_POSITIVE 565 148 102 198 154 tfor:TF2191|5end_hypothetical_protein_2365934..2366164_POSITIVE 558 256 212 165 119 tfor:TF1274|5end_hypothetical_protein_1357621..1357851_POSITIVE 552 250 203 225 175 tfor:TF2745|5end_hypothetical_protein_2927562..2927792_POSITIVE 540 256 211 65 18 tfor:TF3003|5end_hypothetical_protein_3220382..3220612_POSITIVE 510 256 211 197 149 tfor:TF0350|5end_hypothetical_protein_370794..371024_POSITIVE 500 251 219 34 1 tfor:TF0820|5end_hypothetical_protein_879656..879886_POSITIVE 499 250 201 186 131 tfor:TF0499|5end_hypothetical_protein_526257..526487_POSITIVE 488 140 93 164 120 tfor:TF2796|5end_cytochrome_D_ubiquinol_oxidase,_subunit_II_2981269..2981499_POSITIVE 485 360 313 167 116 tfor:TF1818|5end_conserved_hypothetical_protein_1957967..1958197_POSITIVE 475 256 211 94 46 tfor:TF2640|5end_hypothetical_protein_2809106..2809336_POSITIVE 459 150 101 151 105 tfor:TF2817|5end_hypothetical_protein_3007358..3007588_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 760 380 331 84 35 tfor:TF1715|3end_thermolysin;_zinc_metalloprotease_1837202..1837352_POSITIVE 681 260 212 89 44 tfor:TF1762|3end_hypothetical_protein_1899648..1899798_POSITIVE 625 260 212 62 19 tfor:TF0018|3end_hypothetical_protein_12091..12241_POSITIVE 617 148 102 150 106 tfor:TF0820|3end_hypothetical_protein_879942..880092_POSITIVE 578 250 203 70 25 tfor:TF2922|3end_surface_antigen_BspA_3121538..3121688_POSITIVE 555 256 222 53 20 tfor:TF2169|3end_hypothetical_protein_2345354..2345504_POSITIVE 555 256 222 42 9 tfor:TF0361|3end_hypothetical_protein_379810..379960_POSITIVE 539 368 321 67 13 tfor:TF1657|3end_lauroyl/myristoyl_acyltransferase_1773407..1773557_POSITIVE 538 256 211 86 41 tfor:TF0344|3end_hypothetical_protein_366963..367113_POSITIVE 538 256 211 46 1 tfor:TF0343|3end_hypothetical_protein_366923..367073_POSITIVE 531 380 331 64 13 tfor:TF1204|3end_possible_metal-dependent_membrane_protease_1287461..1287611_POSITIVE 520 254 211 77 32 tfor:TF2350|3end_hypothetical_protein_2515364..2515514_POSITIVE 507 260 214 52 1 tfor:TF0677|3end_ATP-binding_protein,_Mrp/Nbp35_family,_involved_in_chromosome_partitioning_720982..721132_POSITIVE 486 273 233 44 5 tfor:TF2047|3end_hypothetical_protein_2210298..2210448_POSITIVE 485 360 313 94 43 tfor:TF1816|3end_hypothetical_protein_1957974..1958124_POSITIVE 485 360 313 111 60 tfor:TF1817|3end_hypothetical_protein_1957991..1958141_POSITIVE 475 256 222 42 9 tfor:TF0349|3end_hypothetical_protein_370719..370869_POSITIVE 463 250 201 82 26 tfor:TF1585|3end_hypothetical_protein_1690610..1690760_POSITIVE 463 250 201 75 19 tfor:TF1584|3end_hypothetical_protein_1690603..1690753_POSITIVE 452 256 222 46 13 tfor:TF2108|3end_hypothetical_protein_2277689..2277839_POSITIVE