Origin IGS: tgattatctaacaaatttacagatattcttccctcggaaactctttcctatttccgagggatttttttcatatactccctcggaaaaagcaagctgaaaactcagaaaaaagttgtttataaaaactgaaaaaaaaatttgaataatccattaggtttttaaatagggttcaaatttcatcttccgaaaaaaaatacaggaattcttttatgtatttttcaaacgatgaaatccacaaaaaaaataatttttttcatgcaaaaatatcccctgaaaaggttttcaagctttgtttataaatcatttataaatactatttataaacaacttatcctgtttatatcttactcaaaaaatagtccgtttatttgaaagaatgaaaaacaaaaaatcattgaagaaaatttcaacactttaaacagcctatcatctatatcatattattttataaaaaccaattatataaatagttgtgagaaaaccgttgaaatattcttttgcttcatattctaactgtatgaaaggtcaattcgtcagaggaaattccacagaacataattggtgatcaattttttcgtaaatagactcggcgtatttgtttagatttgaaaagctactttttgaatttgttttactggtataacacgattgtctattttaaaatgtttatttactgattgaaactgcatttttgggagagttttttatttgtgtatgtctttgattatctttgtgcctctttttatcaagttgagtaatag .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ctattactcaacttgataaaaagaggcacaaagataatcaaagacatacacaaataaaaaactctcccaaaaatgcagtttcaatcagtaaataaacattttaaaatagacaatcgtgttataccagtaaaacaaattcaaaaagtagcttttcaaatctaaacaaatacgccgagtctatttacgaaaaaattgatcaccaattatgttctgtggaatttcctctgacgaattgacctttcatacagttagaatatgaagcaaaagaatatttcaacggttttctcacaactatttatataattggtttttataaaataatatgatatagatgataggctgtttaaagtgttgaaattttcttcaatgattttttgtttttcattctttcaaataaacggactattttttgagtaagatataaacaggataagttgtttataaatagtatttataaatgatttataaacaaagcttgaaaaccttttcaggggatatttttgcatgaaaaaaattattttttttgtggatttcatcgtttgaaaaatacataaaagaattcctgtattttttttcggaagatgaaatttgaaccctatttaaaaacctaatggattattcaaatttttttttcagtttttataaacaacttttttctgagttttcagcttgctttttccgagggagtatatgaaaaaaatccctcggaaataggaaagagtttccgagggaagaatatctgtaaatttgttagataatca Mask Tandem Repeat Region ================================================ tgattatctaacaaatttacagatattcttccctcggaaactctttcctatttccgagggatttttttcatatactccctcggaaaaagcaagctgaaaactcagaaaaaagttgtttataaaaactgaaaaaaaaatttgaataatccattaggtttttaaatagggttcaaatttcatcttccgaaaaaaaatacaggaattcttttatgtatttttcaaacgatgaaatccacaaaaaaaataatttttttcatgcaaaaatatcccctgaaaaggttttcaagctttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaacttatcctgtttatatcttactcaaaaaatagtccgtttatttgaaagaatgaaaaacaaaaaatcattgaagaaaatttcaacactttaaacagcctatcatctatatcatattattttataaaaaccaattatataaatagttgtgagaaaaccgttgaaatattcttttgcttcatattctaactgtatgaaaggtcaattcgtcagaggaaattccacagaacataattggtgatcaattttttcgtaaatagactcggcgtatttgtttagatttgaaaagctactttttgaatttgttttactggtataacacgattgtctattttaaaatgtttatttactgattgaaactgcatttttgggagagttttttatttgtgtatgtctttgattatctttgtgcctctttttatcaagttgagtaatag Find is-nt database================================================ Query_seq: TF2096:TF2097|TF2096:TF2097:possible OmpA, outer membrane-related protein:glucose inhibited division protein A:->->:2268516..2269276 761 tgattatctaacaaatttacagatattcttccctcggaaactctttcctatttccgagggatttttttcatatactccctcggaaaaagcaagctgaaaactcagaaaaaagttgtttataaaaactgaaaaaaaaatttgaataatccattaggtttttaaatagggttcaaatttcatcttccgaaaaaaaatacaggaattcttttatgtatttttcaaacgatgaaatccacaaaaaaaataatttttttcatgcaaaaatatcccctgaaaaggttttcaagctttgtttataaatcatttataaatactatttataaacaacttatcctgtttatatcttactcaaaaaatagtccgtttatttgaaagaatgaaaaacaaaaaatcattgaagaaaatttcaacactttaaacagcctatcatctatatcatattattttataaaaaccaattatataaatagttgtgagaaaaccgttgaaatattcttttgcttcatattctaactgtatgaaaggtcaattcgtcagaggaaattccacagaacataattggtgatcaattttttcgtaaatagactcggcgtatttgtttagatttgaaaagctactttttgaatttgttttactggtataacacgattgtctattttaaaatgtttatttactgattgaaactgcatttttgggagagttttttatttgtgtatgtctttgattatctttgtgcctctttttatcaagttgagtaatag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF2096:TF2097|TF2096:TF2097:possible OmpA, outer membrane-related protein:glucose inhibited division protein A:->->:2268516..2269276 761 tgattatctaacaaatttacagatattcttccctcggaaactctttcctatttccgagggatttttttcatatactccctcggaaaaagcaagctgaaaactcagaaaaaagttgtttataaaaactgaaaaaaaaatttgaataatccattaggtttttaaatagggttcaaatttcatcttccgaaaaaaaatacaggaattcttttatgtatttttcaaacgatgaaatccacaaaaaaaataatttttttcatgcaaaaatatcccctgaaaaggttttcaagctttgtttataaatcatttataaatactatttataaacaacttatcctgtttatatcttactcaaaaaatagtccgtttatttgaaagaatgaaaaacaaaaaatcattgaagaaaatttcaacactttaaacagcctatcatctatatcatattattttataaaaaccaattatataaatagttgtgagaaaaccgttgaaatattcttttgcttcatattctaactgtatgaaaggtcaattcgtcagaggaaattccacagaacataattggtgatcaattttttcgtaaatagactcggcgtatttgtttagatttgaaaagctactttttgaatttgttttactggtataacacgattgtctattttaaaatgtttatttactgattgaaactgcatttttgggagagttttttatttgtgtatgtctttgattatctttgtgcctctttttatcaagttgagtaatag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF2096:TF2097|TF2096:TF2097:possible OmpA, outer membrane-related protein:glucose inhibited division protein A:->->:2268516..2269276 761 tgattatctaacaaatttacagatattcttccctcggaaactctttcctatttccgagggatttttttcatatactccctcggaaaaagcaagctgaaaactcagaaaaaagttgtttataaaaactgaaaaaaaaatttgaataatccattaggtttttaaatagggttcaaatttcatcttccgaaaaaaaatacaggaattcttttatgtatttttcaaacgatgaaatccacaaaaaaaataatttttttcatgcaaaaatatcccctgaaaaggttttcaagctttgtttataaatcatttataaatactatttataaacaacttatcctgtttatatcttactcaaaaaatagtccgtttatttgaaagaatgaaaaacaaaaaatcattgaagaaaatttcaacactttaaacagcctatcatctatatcatattattttataaaaaccaattatataaatagttgtgagaaaaccgttgaaatattcttttgcttcatattctaactgtatgaaaggtcaattcgtcagaggaaattccacagaacataattggtgatcaattttttcgtaaatagactcggcgtatttgtttagatttgaaaagctactttttgaatttgttttactggtataacacgattgtctattttaaaatgtttatttactgattgaaactgcatttttgggagagttttttatttgtgtatgtctttgattatctttgtgcctctttttatcaagttgagtaatag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgattatctaacaaatttacagatattcttccctcggaaactctttcctatttccgagggatttttttcatatactccctcggaaaaagcaagctgaaaactcagaaaaaagttgtttataaaaactgaaaaaaaaatttgaataatccattaggtttttaaatagggttcaaatttcatcttccgaaaaaaaatacaggaattcttttatgtatttttcaaacgatgaaatccacaaaaaaaataatttttttcatgcaaaaatatcccctgaaaaggttttcaagctttgtttataaatcatttataaatactatttataaacaacttatcctgtttatatcttactcaaaaaatagtccgtttatttgaaagaatgaaaaacaaaaaatcattgaagaaaatttcaacactttaaacagcctatcatctatatcatattattttataaaaaccaattatataaatagttgtgagaaaaccgttgaaatattcttttgcttcatattctaactgtatgaaaggtcaattcgtcagaggaaattccacagaacataattggtgatcaattttttcgtaaatagactcggcgtatttgtttagatttgaaaagctactttttgaatttgttttactggtataacacgattgtctattttaaaatgtttatttactgattgaaactgcatttttgggagagttttttatttgtgtatgtctttgattatctttgtgcctctttttatcaagttgagtaatag Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 15 End: 119 .............. M Y R Y S S L G N S F L F P R D F F H I L P R K K Q A E N S E K S C L .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 34 Strand: + Start: 25 End: 126 ........................ M L P S E T L S Y F R G I F F I Y S L G K S K L K T Q K K V V Y K N ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 49 Strand: + Start: 150 End: 296 ..................................................................................................................................................... M R F L N R V Q I S S S E K K Y R N S F M Y F S N D E I H K K N N F F H A K I S P E K V F K L C L ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 163 End: 369 .................................................................................................................................................................. M G F K F H L P K K N T G I L L C I F Q T M K S T K K I I F F M Q K Y P L K R F S S F V Y K S F I N T I Y K Q L I L F I ........................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 35 Strand: + Start: 311 End: 415 ...................................................................................................................................................................................................................................................................................................................... M L F I N N L S C L Y L T Q K I V R L F E R M K N K K S L K K I S T L .......................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: + Start: 391 End: 510 ...................................................................................................................................................................................................................................................................................................................................................................................................... M I E E N F N T L N S L S S I S Y Y F I K T N Y I N S C E K T V E I F F C F I F ........................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 467 End: 562 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M V V R K P L K Y S F A S Y S N C M K G Q F V R G N S T E H N W ....................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 670 End: 759 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. K S I S V A N K P S N K I Q T H R Q N D K H R K K D L Q T M .. Protein_Len: 47 Strand: - Start: 7 End: 147 ...... R V F K C I N K G R F S K G I E S P N K E Y V G E S F A L Q F S L F F N N I F V S F F I Q I M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgattatctaacaaatttacagatattcttccctcggaaactctttcctatttccgagggatttttttcatatactccctcggaaaaagcaagctgaaaactcagaaaaaagttgtttataaaaactgaaaaaaaaatttgaataatccattaggtttttaaatagggttcaaatttcatcttccgaaaaaaaatacaggaattcttttatgtatttttcaaacgatgaaatccacaaaaaaaataatttttttcatgcaaaaatatcccctgaaaaggttttcaagctttgtttataaatcatttataaatactatttataaacaacttatcctgtttatatcttactcaaaaaatagtccgtttatttgaaagaatgaaaaacaaaaaatcattgaagaaaatttcaacactttaaacagcctatcatctatatcatattattttataaaaaccaattatataaatagttgtgagaaaaccgttgaaatattcttttgcttcatattctaactgtatgaaaggtcaattcgtcagaggaaattccacagaacataattggtgatcaattttttcgtaaatagactcggcgtatttgtttagatttgaaaagctactttttgaatttgttttactggtataacacgattgtctattttaaaatgtttatttactgattgaaactgcatttttgggagagttttttatttgtgtatgtctttgattatctttgtgcctctttttatcaagttgagtaatag Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgattatctaacaaatttacagatattcttccctcggaaactctttcctatttccgagggatttttttcatatactccctcggaaaaagcaagctgaaaactcagaaaaaagttgtttataaaaactgaaaaaaaaatttgaataatccattaggtttttaaatagggttcaaatttcatcttccgaaaaaaaatacaggaattcttttatgtatttttcaaacgatgaaatccacaaaaaaaataatttttttcatgcaaaaatatcccctgaaaaggttttcaagctttgtttataaatcatttataaatactatttataaacaacttatcctgtttatatcttactcaaaaaatagtccgtttatttgaaagaatgaaaaacaaaaaatcattgaagaaaatttcaacactttaaacagcctatcatctatatcatattattttataaaaaccaattatataaatagttgtgagaaaaccgttgaaatattcttttgcttcatattctaactgtatgaaaggtcaattcgtcagaggaaattccacagaacataattggtgatcaattttttcgtaaatagactcggcgtatttgtttagatttgaaaagctactttttgaatttgttttactggtataacacgattgtctattttaaaatgtttatttactgattgaaactgcatttttgggagagttttttatttgtgtatgtctttgattatctttgtgcctctttttatcaagttgagtaatag Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -10.3 Tail_Score: -5.59357 Start: 30 End: 61 Full_Region: ATTTACAGATATTCT TCCCTCGGAAA CTCTTTCCTA TTTCCGAGGGA TTTTTTTCATATACT .............................TCCCTCGGAAACTCTTTCCTATTTCCGAGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 43 HP_score: -2.6 Tail_Score: -3.13522 Start: 319 End: 342 Full_Region: TTTATAAATACTATT TATAAACA ACTTATCC TGTTTATA TCTTACTCAAAAAAT ..............................................................................................................................................................................................................................................................................................................................TATAAACAACTTATCCTGTTTATA................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TF2096:TF2097|TF2096:TF2097:possible OmpA, outer membrane-related protein:glucose inhibited division protein A:->->:2268516..2269276 761 tgattatctaacaaatttacagatattcttccctcggaaactctttcctatttccgagggatttttttcatatactccctcggaaaaagcaagctgaaaactcagaaaaaagttgtttataaaaactgaaaaaaaaatttgaataatccattaggtttttaaatagggttcaaatttcatcttccgaaaaaaaatacaggaattcttttatgtatttttcaaacgatgaaatccacaaaaaaaataatttttttcatgcaaaaatatcccctgaaaaggttttcaagctttgtttataaatcatttataaatactatttataaacaacttatcctgtttatatcttactcaaaaaatagtccgtttatttgaaagaatgaaaaacaaaaaatcattgaagaaaatttcaacactttaaacagcctatcatctatatcatattattttataaaaaccaattatataaatagttgtgagaaaaccgttgaaatattcttttgcttcatattctaactgtatgaaaggtcaattcgtcagaggaaattccacagaacataattggtgatcaattttttcgtaaatagactcggcgtatttgtttagatttgaaaagctactttttgaatttgttttactggtataacacgattgtctattttaaaatgtttatttactgattgaaactgcatttttgggagagttttttatttgtgtatgtctttgattatctttgtgcctctttttatcaagttgagtaatag Intra-Species Hit: Count: 1 Min: 1 Max: 761 Len: 761 Subject: tfor_TF2096_TF2097|possible OmpA, outer membrane-related protein:glucose inhibited division protein A|POSITIVE:POSITIVE|[2268516,2269276]|761 HSP 1 e-value: 0.0 bit: 934.0 Len: 507 Query Start:255 Query End:761 Subject Strand: POSITIVE Subject Start: 255 Subject End: 761 ..............................................................................................................................................................................................................................................................catgcaaaaatatcccctgaaaaggttttcaagctttgtttataaatcatttataaatactatttataaacaacttatcctgtttatatcttactcaaaaaatagtccgtttatttgaaagaatgnnnnnnnnnnnntcattgaagaaaatttcaacactttaaacagcctatcatctatatcatattattttataaaaaccaattatataaatagttgtgagaaaaccgttgaaatattcttttgcttcatattctaactgtatgaaaggtcaattcgtcagaggaaattccacagaacataattggtgatcaattttttcgtaaatagactcggcgtatttgtttagatttgaaaagctactttttgaatttgttttactggtataacacgattgtctattttaaaatgtttatttactgattgaaactgcatttttgggagagttttttatttgtgtatgtctttgattatctttgtgcctctttttatcaagttgagtaatag ..............................................................................................................................................................................................................................................................catgcaaaaatatcccctgaaaaggttttcaagctttgtttataaatcatttataaatactatttataaacaacttatcctgtttatatcttactcaaaaaatagtccgtttatttgaaagaatgaaaaacaaaaaatcattgaagaaaatttcaacactttaaacagcctatcatctatatcatattattttataaaaaccaattatataaatagttgtgagaaaaccgttgaaatattcttttgcttcatattctaactgtatgaaaggtcaattcgtcagaggaaattccacagaacataattggtgatcaattttttcgtaaatagactcggcgtatttgtttagatttgaaaagctactttttgaatttgttttactggtataacacgattgtctattttaaaatgtttatttactgattgaaactgcatttttgggagagttttttatttgtgtatgtctttgattatctttgtgcctctttttatcaagttgagtaatag HSP 2 e-value: 2.0E-34 bit: 149.0 Len: 99 Query Start:138 Query End:236 Subject Strand: POSITIVE Subject Start: 138 Subject End: 236 .........................................................................................................................................tttgaataatccattaggtttttaaatagggttcaaatttcatcttccgnnnnnnnntacaggaattcttttatgtatttttcaaacgatgaaatccac............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .........................................................................................................................................tttgaataatccattaggtttttaaatagggttcaaatttcatcttccgaaaaaaaatacaggaattcttttatgtatttttcaaacgatgaaatccac............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 4.0E-26 bit: 121.0 Len: 61 Query Start:1 Query End:61 Subject Strand: POSITIVE Subject Start: 1 Subject End: 61 tgattatctaacaaatttacagatattcttccctcggaaactctttcctatttccgaggga............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ tgattatctaacaaatttacagatattcttccctcggaaactctttcctatttccgaggga............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUUAUCUAACAAAUUUACAGAUAUUCUUCCCUCGGAAACUCUUUCCUAUUUCCGAGGGAUUUUUUUCAUAUACUCCCUCGGAAAAAGCAAGCUGAAAACUCAGAAAAAAGUUGUUUAUAAAAACUGAAAAAAAAAUUUGAAUAAUCCAUUAGGUUUUUAAAUAGGGUUCAAAUUUCAUCUUCCGAAAAAAAAUACAGGAAUUCUUUUAUGUAUUUUUCAAACGAUGAAAUCCACAAAAAAAAUAAUUUUUUUCAUGCAAAAAUAUCCCCUGAAAAGGUUUUCAAGCUUUGUUUAUAAAUCAUUUAUAAAUACUAUUUAUAAACAACUUAUCCUGUUUAUAUCUUACUCAAAAAAUAGUCCGUUUAUUUGAAAGAAUGAAAAACAAAAAAUCAUUGAAGAAAAUUUCAACACUUUAAACAGCCUAUCAUCUAUAUCAUAUUAUUUUAUAAAAACCAAUUAUAUAAAUAGUUGUGAGAAAACCGUUGAAAUAUUCUUUUGCUUCAUAUUCUAACUGUAUGAAAGGUCAAUUCGUCAGAGGAAAUUCCACAGAACAUAAUUGGUGAUCAAUUUUUUCGUAAAUAGACUCGGCGUAUUUGUUUAGAUUUGAAAAGCUACUUUUUGAAUUUGUUUUACUGGUAUAACACGAUUGUCUAUUUUAAAAUGUUUAUUUACUGAUUGAAACUGCAUUUUUGGGAGAGUUUUUUAUUUGUGUAUGUCUUUGAUUAUCUUUGUGCCUCUUUUUAUCAAGUUGAGUAAUAG ..((((..((((........((((((.........((((.....))))..(((((((((((..............)))))))))))..(((((..((((((((......((((((((((((((...(((((((((.(((((((....((....))..)))))))..((.....((((((((........(((((((((.(((....))).))))))))).....)))))))))).............))))))))).............(((....)))...........(((((((((.....)))))))))...)))))))))))))).................((((((((...(.((.(((((((....)))))))...............((((((.((((((((.........((........))...((((((((((((((((.......))))).)))))).))))).......)))))))).))))))...(((((((.......))))))).)).).....(.(((.((.....))........((((..((((..(((.((((...(((((((((((..((((..((.((((((..(((((...)))))..))))))....))..))))....)))..)))))))).)))).)))...))))..))))...)))).)))))))).))))))))..)))))..)))))).((((...................)))).))))..)))).. (-150.37) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUAUUACUCAACUUGAUAAAAAGAGGCACAAAGAUAAUCAAAGACAUACACAAAUAAAAAACUCUCCCAAAAAUGCAGUUUCAAUCAGUAAAUAAACAUUUUAAAAUAGACAAUCGUGUUAUACCAGUAAAACAAAUUCAAAAAGUAGCUUUUCAAAUCUAAACAAAUACGCCGAGUCUAUUUACGAAAAAAUUGAUCACCAAUUAUGUUCUGUGGAAUUUCCUCUGACGAAUUGACCUUUCAUACAGUUAGAAUAUGAAGCAAAAGAAUAUUUCAACGGUUUUCUCACAACUAUUUAUAUAAUUGGUUUUUAUAAAAUAAUAUGAUAUAGAUGAUAGGCUGUUUAAAGUGUUGAAAUUUUCUUCAAUGAUUUUUUGUUUUUCAUUCUUUCAAAUAAACGGACUAUUUUUUGAGUAAGAUAUAAACAGGAUAAGUUGUUUAUAAAUAGUAUUUAUAAAUGAUUUAUAAACAAAGCUUGAAAACCUUUUCAGGGGAUAUUUUUGCAUGAAAAAAAUUAUUUUUUUUGUGGAUUUCAUCGUUUGAAAAAUACAUAAAAGAAUUCCUGUAUUUUUUUUCGGAAGAUGAAAUUUGAACCCUAUUUAAAAACCUAAUGGAUUAUUCAAAUUUUUUUUUCAGUUUUUAUAAACAACUUUUUUCUGAGUUUUCAGCUUGCUUUUUCCGAGGGAGUAUAUGAAAAAAAUCCCUCGGAAAUAGGAAAGAGUUUCCGAGGGAAGAAUAUCUGUAAAUUUGUUAGAUAAUCA ....(((((..((((..((((((((((....................((((.......((((((..........).)))))......((......))..................)))).......(.(((((..(((((((((((((((((((((.(.((((((.....(((..((((((............(((..(((((((((((..(((((((..((.((((((....(((....)))....))))))...(((((..........)))))..))..))).)))).......)))))))))))..)))..............))))))....))))))))).)...))))))........(((((...........))))).............)).)))))))))))))..........(((((.((((((((((((((..(((.((((((.....))))))......(((((((....))))))).........)))..((((((((.(((((((((((((..(((((.....)))))....)))))))))).....))).)))))))).(((((.((((((((((..(((((.........)))))....)))))))))).)))))....))))))))))))))..))))).)))))).)))).)))))).)))).)))))...........((((((((((((........)))))))))))).((.((((((.........)))))).)). (-153.67) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 327 97 54 181 142 tfor:TF1439|5end_outer_membrane_protein,_TonB_dependent_receptor_1522479..1522709_POSITIVE 294 606 562 114 74 tfor:TF1450|5end_periplasmic_serine_protease_1534102..1534332_POSITIVE 294 60 14 180 133 tfor:TF0379|5end_conserved_hypothetical_protein,_nif3_family_399458..399688_POSITIVE 292 79 34 194 133 tfor:TF2952|5end_transposase_3159572..3159802_POSITIVE 291 89 41 110 62 tfor:TF2816|5end_hypothetical_protein_3006925..3007155_POSITIVE 290 96 55 115 68 tfor:TF3142|5end_conserved_hypothetical_protein_3376357..3376587_POSITIVE 286 89 41 61 14 tfor:TF0542|5end_hypothetical_protein_571918..572148_POSITIVE 284 90 41 173 124 tfor:TF2777|5end_hypothetical_protein_2961595..2961825_POSITIVE 281 93 53 59 12 tfor:TF1714|5end_hypothetical_protein_1834125..1834355_POSITIVE 278 567 523 212 159 tfor:TF0839|5end_aminopeptidasem_M28_family_890442..890672_POSITIVE 276 59 28 27 1 tfor:TF2876|5end_cytosine_deaminase_3065144..3065374_POSITIVE 275 89 41 179 131 tfor:TF1841|5end_hypothetical_protein_1991936..1992166_POSITIVE 274 57 18 205 165 tfor:TF0651|5end_hypothetical_protein_693338..693568_POSITIVE 273 89 41 179 130 tfor:TF2745|5end_hypothetical_protein_2927562..2927792_POSITIVE 271 630 581 210 150 tfor:TF1574|5end_two-component_system_response_regulator_1681807..1682037_POSITIVE 271 80 33 188 145 tfor:TF0731|5end_conserved_hypothetical_protein_783850..784080_POSITIVE 270 84 47 43 5 tfor:TF1600|5end_uroporphyrinogen-III_synthase_1713964..1714194_POSITIVE 267 56 25 74 39 tfor:TF1559|5end_glycosyltransferase_1665879..1666109_POSITIVE 265 597 559 71 32 tfor:TF0016|5end_hypothetical_protein_10292..10522_POSITIVE 263 97 55 41 1 tfor:TF0629|5end_hypothetical_protein_665230..665460_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 327 97 54 146 107 tfor:TF1438|3end_hypothetical_protein_1522524..1522674_POSITIVE 280 97 51 57 5 tfor:TF2096|3end_possible_OmpA,_outer_membrane-related_protein_2268455..2268605_POSITIVE 276 59 28 27 1 tfor:TF2874|3end_conserved_hypothetical_protein_3065224..3065374_POSITIVE 275 60 23 55 14 tfor:TF0828|3end_hypothetical_protein_887508..887658_POSITIVE 271 586 547 75 34 tfor:TF1316|3end_conserved_hypothetical_protein;_possible_TPR-repeat-containing_protein_1393496..1393646_POSITIVE 270 84 47 53 15 tfor:TF1599|3end_ribonuclease_P_protein_component_1714054..1714204_POSITIVE 267 56 25 74 39 tfor:TF1558|3end_possible_heme_biosynthesis_protein_1665959..1666109_POSITIVE 259 59 14 116 64 tfor:TF2889|3end_50S_ribosomal_protein_L27_3078688..3078838_POSITIVE 257 90 44 131 84 tfor:TF0886|3end_conjugative_transposon_protein_fragment_938152..938302_POSITIVE 256 755 711 39 1 tfor:TF3048|3end_conserved_hypothetical_protein_3277105..3277255_POSITIVE 255 85 41 75 35 tfor:TF1841|3end_hypothetical_protein_1992267..1992417_POSITIVE 254 59 19 151 94 tfor:TF2378|3end_peptide_chain_release_factor_1_2543871..2544021_POSITIVE 253 80 33 117 81 tfor:TF3042|3end_ferrous_iron_transport_protein_B_3271949..3272099_POSITIVE 249 69 21 148 91 tfor:TF2951|3end_O-succinylbenzoic_acid--CoA_ligase_3159622..3159772_POSITIVE 247 83 50 90 55 tfor:TF2556|3end_conserved_hypothetical_protein_2737095..2737245_POSITIVE 247 80 32 136 81 tfor:TF1872|3end_ABC_transporter,_ATP-binding/permease_component_2026811..2026961_POSITIVE 247 729 692 47 3 tfor:TF1396|3end_conserved_hypothetical_protein_1470400..1470550_POSITIVE 247 80 32 136 81 tfor:TF1130|3end_ABC_transporter_ATP-binding_protein/permease_component_1207677..1207827_POSITIVE 246 60 20 36 1 tfor:TF1169|3end_lipoprotein_ABC_transporter,_permease_component_1251573..1251723_POSITIVE 243 69 30 43 4 tfor:TF2466|3end_pyruvate_kinase_2645907..2646057_POSITIVE