Origin IGS: taagctcatacttgtggagttgttaacattgctgtctgataaaactttttatttcttgtaaaaagttttatcggataacaatgattgttatgtgttagtcagcaaacaatcgaaccaatcaacaaccaaacgtccgaaaggtttccctgacattttgtcgttttttacggcaaagttacgcttttttcagagacgcaactctgctttccgatcaatacatgtctgttttcgggacaacatcggctgatttcaggacaatgaagtctgatttcagtgcacgatcgaacttcgataagctcagaaatgaccaatttcaagacaatcttgtctgcttttcattcagccgtttctgatttcggtgcaaagcccgaataaaaaacatcgccgatgccattcgtttatcctccggtatcgatcagtggggtatcagtgaggttttcgttcgtgtgaaagagttgcctacaccttttgtcaatgtatatctggatgacaatctcctcttatgggttgcagcaatccgtcgactgcaaaaaacacagttgtatctgaaaccgtaaaactcgcggcgctcacttgaacagtccgga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tccggactgttcaagtgagcgccgcgagttttacggtttcagatacaactgtgttttttgcagtcgacggattgctgcaacccataagaggagattgtcatccagatatacattgacaaaaggtgtaggcaactctttcacacgaacgaaaacctcactgataccccactgatcgataccggaggataaacgaatggcatcggcgatgttttttattcgggctttgcaccgaaatcagaaacggctgaatgaaaagcagacaagattgtcttgaaattggtcatttctgagcttatcgaagttcgatcgtgcactgaaatcagacttcattgtcctgaaatcagccgatgttgtcccgaaaacagacatgtattgatcggaaagcagagttgcgtctctgaaaaaagcgtaactttgccgtaaaaaacgacaaaatgtcagggaaacctttcggacgtttggttgttgattggttcgattgtttgctgactaacacataacaatcattgttatccgataaaactttttacaagaaataaaaagttttatcagacagcaatgttaacaactccacaagtatgagctta Mask Tandem Repeat Region ================================================ taagctcatacttgtggagttgttaacattgctgtctgataaaactttttatttcttgtaaaaagttttatcggataacaatgattgttatgtgttagtcagcaaacaatcgaaccaatcaacaaccaaacgtccgaaaggtttccctgacattttgtcgttttttacggcaaagttacgcttttttcagagacgcaactctgctttccgatcaatacatgtctgttttcgggacaacatcggctgatttcaggacaatgaagtctgatttcagtgcacgatcgaacttcgataagctcagaaatgaccaatttcaagacaatcttgtctgcttttcattcagccgtttctgatttcggtgcaaagcccgaataaaaaacatcgccgatgccattcgtttatcctccggtatcgatcagtggggtatcagtgaggttttcgttcgtgtgaaagagttgcctacaccttttgtcaatgtatatctggatgacaatctcctcttatgggttgcagcaatccgtcgactgcaaaaaacacagttgtatctgaaaccgtaaaactcgcggcgctcacttgaacagtccgga Find is-nt database================================================ Query_seq: TF1991:TF1992|TF1991:TF1992:hypothetical protein:hypothetical protein:->->:2143645..2144231 587 taagctcatacttgtggagttgttaacattgctgtctgataaaactttttatttcttgtaaaaagttttatcggataacaatgattgttatgtgttagtcagcaaacaatcgaaccaatcaacaaccaaacgtccgaaaggtttccctgacattttgtcgttttttacggcaaagttacgcttttttcagagacgcaactctgctttccgatcaatacatgtctgttttcgggacaacatcggctgatttcaggacaatgaagtctgatttcagtgcacgatcgaacttcgataagctcagaaatgaccaatttcaagacaatcttgtctgcttttcattcagccgtttctgatttcggtgcaaagcccgaataaaaaacatcgccgatgccattcgtttatcctccggtatcgatcagtggggtatcagtgaggttttcgttcgtgtgaaagagttgcctacaccttttgtcaatgtatatctggatgacaatctcctcttatgggttgcagcaatccgtcgactgcaaaaaacacagttgtatctgaaaccgtaaaactcgcggcgctcacttgaacagtccgga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1991:TF1992|TF1991:TF1992:hypothetical protein:hypothetical protein:->->:2143645..2144231 587 taagctcatacttgtggagttgttaacattgctgtctgataaaactttttatttcttgtaaaaagttttatcggataacaatgattgttatgtgttagtcagcaaacaatcgaaccaatcaacaaccaaacgtccgaaaggtttccctgacattttgtcgttttttacggcaaagttacgcttttttcagagacgcaactctgctttccgatcaatacatgtctgttttcgggacaacatcggctgatttcaggacaatgaagtctgatttcagtgcacgatcgaacttcgataagctcagaaatgaccaatttcaagacaatcttgtctgcttttcattcagccgtttctgatttcggtgcaaagcccgaataaaaaacatcgccgatgccattcgtttatcctccggtatcgatcagtggggtatcagtgaggttttcgttcgtgtgaaagagttgcctacaccttttgtcaatgtatatctggatgacaatctcctcttatgggttgcagcaatccgtcgactgcaaaaaacacagttgtatctgaaaccgtaaaactcgcggcgctcacttgaacagtccgga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1991:TF1992|TF1991:TF1992:hypothetical protein:hypothetical protein:->->:2143645..2144231 587 taagctcatacttgtggagttgttaacattgctgtctgataaaactttttatttcttgtaaaaagttttatcggataacaatgattgttatgtgttagtcagcaaacaatcgaaccaatcaacaaccaaacgtccgaaaggtttccctgacattttgtcgttttttacggcaaagttacgcttttttcagagacgcaactctgctttccgatcaatacatgtctgttttcgggacaacatcggctgatttcaggacaatgaagtctgatttcagtgcacgatcgaacttcgataagctcagaaatgaccaatttcaagacaatcttgtctgcttttcattcagccgtttctgatttcggtgcaaagcccgaataaaaaacatcgccgatgccattcgtttatcctccggtatcgatcagtggggtatcagtgaggttttcgttcgtgtgaaagagttgcctacaccttttgtcaatgtatatctggatgacaatctcctcttatgggttgcagcaatccgtcgactgcaaaaaacacagttgtatctgaaaccgtaaaactcgcggcgctcacttgaacagtccgga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taagctcatacttgtggagttgttaacattgctgtctgataaaactttttatttcttgtaaaaagttttatcggataacaatgattgttatgtgttagtcagcaaacaatcgaaccaatcaacaaccaaacgtccgaaaggtttccctgacattttgtcgttttttacggcaaagttacgcttttttcagagacgcaactctgctttccgatcaatacatgtctgttttcgggacaacatcggctgatttcaggacaatgaagtctgatttcagtgcacgatcgaacttcgataagctcagaaatgaccaatttcaagacaatcttgtctgcttttcattcagccgtttctgatttcggtgcaaagcccgaataaaaaacatcgccgatgccattcgtttatcctccggtatcgatcagtggggtatcagtgaggttttcgttcgtgtgaaagagttgcctacaccttttgtcaatgtatatctggatgacaatctcctcttatgggttgcagcaatccgtcgactgcaaaaaacacagttgtatctgaaaccgtaaaactcgcggcgctcacttgaacagtccgga Predict ORF larger than 30AA ================================================ Protein_Len: 51 Strand: + Start: 92 End: 244 ........................................................................................... M L V S K Q S N Q S T T K R P K G F P D I L S F F T A K L R F F Q R R N S A F R S I H V C F R D N I G ....................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 147 End: 350 .................................................................................................................................................. M T F C R F L R Q S Y A F F R D A T L L S D Q Y M S V F G T T S A D F R T M K S D F S A R S N F D K L R N D Q F Q D N L ............................................................................................................................................................................................................................................. Protein_Len: 36 Strand: + Start: 265 End: 372 ........................................................................................................................................................................................................................................................................ M I S V H D R T S I S S E M T N F K T I L S A F H S A V S D F G A K P E ....................................................................................................................................................................................................................... Protein_Len: 40 Strand: + Start: 311 End: 430 ...................................................................................................................................................................................................................................................................................................................... M S R Q S C L L F I Q P F L I S V Q S P N K K H R R C H S F I L R Y R S V G Y Q ............................................................................................................................................................. Protein_Len: 60 Strand: + Start: 372 End: 554 ................................................................................................................................................................................................................................................................................................................................................................................... M K N I A D A I R L S S G I D Q W G I S E V F V R V K E L P T P F V N V Y L D D N L L L W V A A I R R L Q K T Q L Y L K ................................. Protein_Len: 33 Strand: - Start: 475 End: 573 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... H I D P H C D G R I P Q L L G D V A F F V T T D S V T F S A A S M .............. Protein_Len: 33 Strand: - Start: 419 End: 517 .................................................................................................................................................................................................................................................................................................................................................................................................................................. H P I L S T K T R T F S N G V G K T L T Y R S S L R R K H T A A M ...................................................................... Protein_Len: 31 Strand: - Start: 402 End: 494 ................................................................................................................................................................................................................................................................................................................................................................................................................. G G T D I L P T D T L N E N T H F L Q R C R K D I Y I Q I V M ............................................................................................. Protein_Len: 32 Strand: - Start: 317 End: 412 ............................................................................................................................................................................................................................................................................................................................ S L R T Q K E N L R K Q N R H L A R I F F M A S A M R K D E P M ............................................................................................................................................................................... Protein_Len: 52 Strand: - Start: 168 End: 323 ....................................................................................................................................................................... P L T V S K E S V C S Q K G I L V H R N E P C C R S I E P C H L R I E T C S R V E I L E S I V L K L V M ........................................................................................................................................................................................................................................................................ taagctcatacttgtggagttgttaacattgctgtctgataaaactttttatttcttgtaaaaagttttatcggataacaatgattgttatgtgttagtcagcaaacaatcgaaccaatcaacaaccaaacgtccgaaaggtttccctgacattttgtcgttttttacggcaaagttacgcttttttcagagacgcaactctgctttccgatcaatacatgtctgttttcgggacaacatcggctgatttcaggacaatgaagtctgatttcagtgcacgatcgaacttcgataagctcagaaatgaccaatttcaagacaatcttgtctgcttttcattcagccgtttctgatttcggtgcaaagcccgaataaaaaacatcgccgatgccattcgtttatcctccggtatcgatcagtggggtatcagtgaggttttcgttcgtgtgaaagagttgcctacaccttttgtcaatgtatatctggatgacaatctcctcttatgggttgcagcaatccgtcgactgcaaaaaacacagttgtatctgaaaccgtaaaactcgcggcgctcacttgaacagtccgga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taagctcatacttgtggagttgttaacattgctgtctgataaaactttttatttcttgtaaaaagttttatcggataacaatgattgttatgtgttagtcagcaaacaatcgaaccaatcaacaaccaaacgtccgaaaggtttccctgacattttgtcgttttttacggcaaagttacgcttttttcagagacgcaactctgctttccgatcaatacatgtctgttttcgggacaacatcggctgatttcaggacaatgaagtctgatttcagtgcacgatcgaacttcgataagctcagaaatgaccaatttcaagacaatcttgtctgcttttcattcagccgtttctgatttcggtgcaaagcccgaataaaaaacatcgccgatgccattcgtttatcctccggtatcgatcagtggggtatcagtgaggttttcgttcgtgtgaaagagttgcctacaccttttgtcaatgtatatctggatgacaatctcctcttatgggttgcagcaatccgtcgactgcaaaaaacacagttgtatctgaaaccgtaaaactcgcggcgctcacttgaacagtccgga Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -12.9 Tail_Score: -3.97645 Start: 26 End: 84 Full_Region: CTTGTGGAGTTGTTA ACATTGCTGTCTGATAAAACTTTTTAT TTCTT GTAAAAAGTTTTATCGGATAACAATGA TTGTTATGTGTTAGT .........................ACATTGCTGTCTGATAAAACTTTTTATTTCTTGTAAAAAGTTTTATCGGATAACAATGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -16.4 Tail_Score: -2.97503 Start: 27 End: 83 Full_Region: TTGTGGAGTTGTTAA CATTGCTGTCTGATAAAACTTTTTAT TTCTT GTAAAAAGTTTTATCGGATAACAATG ATTGTTATGTGTTAG ..........................CATTGCTGTCTGATAAAACTTTTTATTTCTTGTAAAAAGTTTTATCGGATAACAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 75 HP_score: -10.3 Tail_Score: -3.03124 Start: 29 End: 81 Full_Region: aacacataacaatca ttgttatccgataaaacttttta caagaaa taaaaagttttatcagacagcaa tgttaacaactccac ............................ttgttatccgataaaactttttacaagaaataaaaagttttatcagacagcaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 91 HP_score: -13.2 Tail_Score: -3.02916 Start: 29 End: 81 Full_Region: GTGGAGTTGTTAACA TTGCTGTCTGATAAAACTTTTTAT TTCTT GTAAAAAGTTTTATCGGATAACAA TGATTGTTATGTGTT ............................TTGCTGTCTGATAAAACTTTTTATTTCTTGTAAAAAGTTTTATCGGATAACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 71 HP_score: -4.1 Tail_Score: -5.00616 Start: 148 End: 160 Full_Region: TCCGAAAGGTTTCCC TGACA TTT TGTCG TTTTTTACGGCAAAG ...................................................................................................................................................TGACATTTTGTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 48 HP_score: -4.7 Tail_Score: -2.76492 Start: 188 End: 203 Full_Region: AAGTTACGCTTTTTT CAGAG ACGCAA CTCTG CTTTCCGATCAATAC ...........................................................................................................................................................................................CAGAGACGCAACTCTG................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 43 HP_score: -2.9 Tail_Score: -2.94144 Start: 246 End: 265 Full_Region: GGGACAACATCGGCT GATTTCA GGACAA TGAAGTC TGATTTCAGTGCACG .....................................................................................................................................................................................................................................................GATTTCAGGACAATGAAGTC.................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 89 HP_score: -5.4 Tail_Score: -5.45652 Start: 380 End: 390 Full_Region: aggataaacgaatgg catc ggc gatg ttttttattcgggct ...........................................................................................................................................................................................................................................................................................................................................................................................catcggcgatg..................................................................................................................................................................................................... Find igs database================================================ Query_seq: TF1991:TF1992|TF1991:TF1992:hypothetical protein:hypothetical protein:->->:2143645..2144231 587 taagctcatacttgtggagttgttaacattgctgtctgataaaactttttatttcttgtaaaaagttttatcggataacaatgattgttatgtgttagtcagcaaacaatcgaaccaatcaacaaccaaacgtccgaaaggtttccctgacattttgtcgttttttacggcaaagttacgcttttttcagagacgcaactctgctttccgatcaatacatgtctgttttcgggacaacatcggctgatttcaggacaatgaagtctgatttcagtgcacgatcgaacttcgataagctcagaaatgaccaatttcaagacaatcttgtctgcttttcattcagccgtttctgatttcggtgcaaagcccgaataaaaaacatcgccgatgccattcgtttatcctccggtatcgatcagtggggtatcagtgaggttttcgttcgtgtgaaagagttgcctacaccttttgtcaatgtatatctggatgacaatctcctcttatgggttgcagcaatccgtcgactgcaaaaaacacagttgtatctgaaaccgtaaaactcgcggcgctcacttgaacagtccgga Intra-Species Hit: Count: 1 Min: 1 Max: 587 Len: 587 Subject: tfor_TF1991_TF1992|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2143645,2144231]|587 HSP 1 e-value: 0.0 bit: 1164.0 Len: 587 Query Start:1 Query End:587 Subject Strand: POSITIVE Subject Start: 1 Subject End: 587 taagctcatacttgtggagttgttaacattgctgtctgataaaactttttatttcttgtaaaaagttttatcggataacaatgattgttatgtgttagtcagcaaacaatcgaaccaatcaacaaccaaacgtccgaaaggtttccctgacattttgtcgttttttacggcaaagttacgcttttttcagagacgcaactctgctttccgatcaatacatgtctgttttcgggacaacatcggctgatttcaggacaatgaagtctgatttcagtgcacgatcgaacttcgataagctcagaaatgaccaatttcaagacaatcttgtctgcttttcattcagccgtttctgatttcggtgcaaagcccgaataaaaaacatcgccgatgccattcgtttatcctccggtatcgatcagtggggtatcagtgaggttttcgttcgtgtgaaagagttgcctacaccttttgtcaatgtatatctggatgacaatctcctcttatgggttgcagcaatccgtcgactgcaaaaaacacagttgtatctgaaaccgtaaaactcgcggcgctcacttgaacagtccgga taagctcatacttgtggagttgttaacattgctgtctgataaaactttttatttcttgtaaaaagttttatcggataacaatgattgttatgtgttagtcagcaaacaatcgaaccaatcaacaaccaaacgtccgaaaggtttccctgacattttgtcgttttttacggcaaagttacgcttttttcagagacgcaactctgctttccgatcaatacatgtctgttttcgggacaacatcggctgatttcaggacaatgaagtctgatttcagtgcacgatcgaacttcgataagctcagaaatgaccaatttcaagacaatcttgtctgcttttcattcagccgtttctgatttcggtgcaaagcccgaataaaaaacatcgccgatgccattcgtttatcctccggtatcgatcagtggggtatcagtgaggttttcgttcgtgtgaaagagttgcctacaccttttgtcaatgtatatctggatgacaatctcctcttatgggttgcagcaatccgtcgactgcaaaaaacacagttgtatctgaaaccgtaaaactcgcggcgctcacttgaacagtccgga Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGCUCAUACUUGUGGAGUUGUUAACAUUGCUGUCUGAUAAAACUUUUUAUUUCUUGUAAAAAGUUUUAUCGGAUAACAAUGAUUGUUAUGUGUUAGUCAGCAAACAAUCGAACCAAUCAACAACCAAACGUCCGAAAGGUUUCCCUGACAUUUUGUCGUUUUUUACGGCAAAGUUACGCUUUUUUCAGAGACGCAACUCUGCUUUCCGAUCAAUACAUGUCUGUUUUCGGGACAACAUCGGCUGAUUUCAGGACAAUGAAGUCUGAUUUCAGUGCACGAUCGAACUUCGAUAAGCUCAGAAAUGACCAAUUUCAAGACAAUCUUGUCUGCUUUUCAUUCAGCCGUUUCUGAUUUCGGUGCAAAGCCCGAAUAAAAAACAUCGCCGAUGCCAUUCGUUUAUCCUCCGGUAUCGAUCAGUGGGGUAUCAGUGAGGUUUUCGUUCGUGUGAAAGAGUUGCCUACACCUUUUGUCAAUGUAUAUCUGGAUGACAAUCUCCUCUUAUGGGUUGCAGCAAUCCGUCGACUGCAAAAAACACAGUUGUAUCUGAAACCGUAAAACUCGCGGCGCUCACUUGAACAGUCCGGA ..((((((((...(.((((((((((..((((.((((((((((((((((((((.....)))))))))))))))))))).))))(((((((.(((........))))))))))..............(((.((((.((((((((.((.((((.((((((((((.....))))))))))..........)))).)).((((((((...((((((.....(((....)))..))))))........(((((..((((.((......))))))..)))))((((((.((((((((((.((((...(((((.....))))).(((((....))))))))).)).....(((.(..((((.(((((.((...))))))).............(((((((...............))))))).)))).).)))......)))))..))).))))))...))))))))....))))))))...)))).....))).)))))).)))).).)))))))).......((((..(((((.........(((......)))...((((.......))))............))))))))) (-166.86) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCCGGACUGUUCAAGUGAGCGCCGCGAGUUUUACGGUUUCAGAUACAACUGUGUUUUUUGCAGUCGACGGAUUGCUGCAACCCAUAAGAGGAGAUUGUCAUCCAGAUAUACAUUGACAAAAGGUGUAGGCAACUCUUUCACACGAACGAAAACCUCACUGAUACCCCACUGAUCGAUACCGGAGGAUAAACGAAUGGCAUCGGCGAUGUUUUUUAUUCGGGCUUUGCACCGAAAUCAGAAACGGCUGAAUGAAAAGCAGACAAGAUUGUCUUGAAAUUGGUCAUUUCUGAGCUUAUCGAAGUUCGAUCGUGCACUGAAAUCAGACUUCAUUGUCCUGAAAUCAGCCGAUGUUGUCCCGAAAACAGACAUGUAUUGAUCGGAAAGCAGAGUUGCGUCUCUGAAAAAAGCGUAACUUUGCCGUAAAAAACGACAAAAUGUCAGGGAAACCUUUCGGACGUUUGGUUGUUGAUUGGUUCGAUUGUUUGCUGACUAACACAUAACAAUCAUUGUUAUCCGAUAAAACUUUUUACAAGAAAUAAAAAGUUUUAUCAGACAGCAAUGUUAACAACUCCACAAGUAUGAGCUUA ...(((.((((..((..((((...(((.......(((.((((.......((((..((..((((((....))))))...))..)))).((((...((((((.............))))))...((((((....)).....)))).........)))).)))).)))..((..((((((((((((.(........(..((((((((..((((((((((((((.(((((.........))))...).))))))))))))))(((((....((((.((..(..(((((...(((((((....)))))))...))).))..)..))))))....))))).........))))))))..).(((((....(((((...(((.(((.(..(((((((((((.((.(....).)))))))))))))..)......)))))).))))).((....)).))))).).))))).)))))))..)))))..))))..))....)))).........(((((((.((.((((((((((((((.......)))))))))))))).)).)))))))........)))..((((....)))). (-173.02) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 879 370 321 141 92 tfor:TF1987|5end_hypothetical_protein_2137359..2137589_POSITIVE 627 397 352 43 1 tfor:TF1988|5end_hypothetical_protein_2137237..2137467_POSITIVE 425 430 383 178 113 tfor:TF0595|5end_hypothetical_protein_627820..628050_POSITIVE 398 430 381 208 165 tfor:TF2314|5end_conserved_hypothetical_protein_2473530..2473760_POSITIVE 391 138 94 155 108 tfor:TF1818|5end_conserved_hypothetical_protein_1957967..1958197_POSITIVE 381 248 206 229 179 tfor:TF2055|5end_UDP-N-acetyl-D-mannosaminuronic_acid_dehydrogenase_2219463..2219693_POSITIVE 378 414 382 62 25 tfor:TF0816|5end_hypothetical_protein_874217..874447_POSITIVE 371 448 405 159 105 tfor:TF1891|5end_hypothetical_protein_2043389..2043619_POSITIVE 371 387 343 93 43 tfor:TF0888|5end_transfer_region-related_protein,_TraN_938392..938622_POSITIVE 369 367 327 129 83 tfor:TF1900|5end_conserved_hypothetical_protein_2053867..2054097_POSITIVE 368 430 381 90 35 tfor:TF2282|5end_hypothetical_protein_2439401..2439631_POSITIVE 365 430 383 126 83 tfor:TF2204|5end_conserved_hypothetical_protein_2378866..2379096_POSITIVE 363 466 421 173 137 tfor:TF1923|5end_conserved_hypothetical_protein;_possible_phosphoserine_phosphatase_2072259..2072489_POSITIVE 360 429 384 211 168 tfor:TF1146|5end_2-dehydropantoate_2-reductase_1227162..1227392_POSITIVE 355 427 381 229 181 tfor:TF2918|5end_hypothetical_protein_3114084..3114314_POSITIVE 354 370 325 208 157 tfor:TF2259|5end_transfer_region-related_protein,_TraK_2429577..2429807_POSITIVE 354 290 241 196 139 tfor:TF2020|5end_muconate_cycloisomerase_2176321..2176551_POSITIVE 354 428 382 177 127 tfor:TF1609|5end_hypothetical_protein_1728340..1728570_POSITIVE 353 423 381 228 181 tfor:TF1925|5end_hypothetical_protein_2074458..2074688_POSITIVE 353 423 381 185 138 tfor:TF1926|5end_hypothetical_protein_2074415..2074645_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 391 138 94 82 35 tfor:TF1816|3end_hypothetical_protein_1957974..1958124_POSITIVE 391 138 94 99 52 tfor:TF1817|3end_hypothetical_protein_1957991..1958141_POSITIVE 368 430 381 83 28 tfor:TF2280|3end_hypothetical_protein_2439474..2439624_POSITIVE 360 429 384 149 106 tfor:TF1145|3end_anaerobic_C4-dicarboxylate_membrane_transporter_1227180..1227330_POSITIVE 353 448 402 143 97 tfor:TF0478|3end_conserved_hypothetical_protein_498627..498777_POSITIVE 351 460 416 45 1 tfor:TF1901|3end_conserved_hypothetical_protein_2057428..2057578_POSITIVE 347 248 209 126 84 tfor:TF2297|3end_hypothetical_protein_2449673..2449823_POSITIVE 345 447 403 68 18 tfor:TF2249|3end_transfer_region-related_protein,_TraC_2423418..2423568_POSITIVE 344 440 400 150 98 tfor:TF2782|3end_conserved_hypothetical_protein_2967356..2967506_POSITIVE 343 463 421 150 117 tfor:TF1922|3end_hypothetical_protein_2072319..2072469_POSITIVE 337 244 201 85 47 tfor:TF0624|3end_Xaa-Pro_dipeptidase_(aminopeptidase_P)_661015..661165_POSITIVE 335 450 406 79 36 tfor:TF2058|3end_possible_ATP-dependent_DNA_helicase_2223798..2223948_POSITIVE 334 459 412 151 105 tfor:TF2435|3end_DNA_repair_protein_radC_2615136..2615286_POSITIVE 328 160 111 81 33 tfor:TF2978|3end_conserved_hypothetical_protein_3190862..3191012_POSITIVE 328 427 382 126 70 tfor:TF2654|3end_arginyl-tRNA_synthetase_2824559..2824709_POSITIVE 327 80 33 61 14 tfor:TF1991|3end_hypothetical_protein_2143584..2143734_POSITIVE 325 430 381 123 63 tfor:TF1944|3end_conserved_hypothetical_protein_2093309..2093459_POSITIVE 321 369 321 71 19 tfor:TF2143|3end_S-adenosylmethionine:tRNA_ribosyltransferase-isomerase_2319704..2319854_POSITIVE 320 428 381 92 20 tfor:TF2829|3end_conserved_hypothetical_protein_3020661..3020811_POSITIVE 319 448 407 147 95 tfor:TF1199|3end_dephospho-CoA_kinase_1282797..1282947_POSITIVE