Origin IGS: cttccgttcttatttatgtttattccagagaccatatcagcaacgaagcatcttatcttaaacccatgctttacggttttttgccgtatgtacgcccatcttcgcaaccgatgcaaagctacaagataaatttcaattcacccacaggctgcgtttaaattttattttttgattcaatgaagcagaattctaaatcatggtcagttggagaaaggcaatgctacatccatttaaaacttcgtagtctttcaccaaacttctactgaaattgaaaaccaccccaatattctttctacaatctattttggactctgtcttgcatatgggcagaatgtattatattgccccccataaacacacaaatatccagacagttatcaaaaatccaattcgcagaataccgtttatatgttgtataacatataaaaataatgattctaaaaagatccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttagggggagggctgcgcatgatattcccacaaaaactgaaggctta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taagccttcagtttttgtgggaatatcatgcgcagccctccccctaaacgcttggtggggtaaggggaagctatggcgtctgcaaataaatgagcgatttatcatacaaggaaattgataaaatactatgaaatttaattagtgctttactatatcaaggattataataaagttgcggaattaaggatctttttagaatcattatttttatatgttatacaacatataaacggtattctgcgaattggatttttgataactgtctggatatttgtgtgtttatggggggcaatataatacattctgcccatatgcaagacagagtccaaaatagattgtagaaagaatattggggtggttttcaatttcagtagaagtttggtgaaagactacgaagttttaaatggatgtagcattgcctttctccaactgaccatgatttagaattctgcttcattgaatcaaaaaataaaatttaaacgcagcctgtgggtgaattgaaatttatcttgtagctttgcatcggttgcgaagatgggcgtacatacggcaaaaaaccgtaaagcatgggtttaagataagatgcttcgttgctgatatggtctctggaataaacataaataagaacggaag Mask Tandem Repeat Region ================================================ cttccgttcttatttatgtttattccagagaccatatcagcaacgaagcatcttatcttaaacccatgctttacggttttttgccgtatgtacgcccatcttcgcaaccgatgcaaagctacaagataaatttcaattcacccacaggctgcgtttaaattttattttttgattcaatgaagcagaattctaaatcatggtcagttggagaaaggcaatgctacatccatttaaaacttcgtagtctttcaccaaacttctactgaaattgaaaaccaccccaatattctttctacaatctattttggactctgtcttgcatatgggcagaatgtattatattgccccccataaacacacaaatatccagacagttatcaaaaatccaattcgcagaataccgtttatatgttgtataacatataaaaataatgattctaaaaagatccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttagggggagggctgcgcatgatattcccacaaaaactgaaggctta Find is-nt database================================================ Query_seq: TF1982:TF1983|TF1982:TF1983:1,4-alpha-glucan branching enzyme:conserved hypothetical protein:->->:2134191..2134823 633 cttccgttcttatttatgtttattccagagaccatatcagcaacgaagcatcttatcttaaacccatgctttacggttttttgccgtatgtacgcccatcttcgcaaccgatgcaaagctacaagataaatttcaattcacccacaggctgcgtttaaattttattttttgattcaatgaagcagaattctaaatcatggtcagttggagaaaggcaatgctacatccatttaaaacttcgtagtctttcaccaaacttctactgaaattgaaaaccaccccaatattctttctacaatctattttggactctgtcttgcatatgggcagaatgtattatattgccccccataaacacacaaatatccagacagttatcaaaaatccaattcgcagaataccgtttatatgttgtataacatataaaaataatgattctaaaaagatccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttagggggagggctgcgcatgatattcccacaaaaactgaaggctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1982:TF1983|TF1982:TF1983:1,4-alpha-glucan branching enzyme:conserved hypothetical protein:->->:2134191..2134823 633 cttccgttcttatttatgtttattccagagaccatatcagcaacgaagcatcttatcttaaacccatgctttacggttttttgccgtatgtacgcccatcttcgcaaccgatgcaaagctacaagataaatttcaattcacccacaggctgcgtttaaattttattttttgattcaatgaagcagaattctaaatcatggtcagttggagaaaggcaatgctacatccatttaaaacttcgtagtctttcaccaaacttctactgaaattgaaaaccaccccaatattctttctacaatctattttggactctgtcttgcatatgggcagaatgtattatattgccccccataaacacacaaatatccagacagttatcaaaaatccaattcgcagaataccgtttatatgttgtataacatataaaaataatgattctaaaaagatccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttagggggagggctgcgcatgatattcccacaaaaactgaaggctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1982:TF1983|TF1982:TF1983:1,4-alpha-glucan branching enzyme:conserved hypothetical protein:->->:2134191..2134823 633 cttccgttcttatttatgtttattccagagaccatatcagcaacgaagcatcttatcttaaacccatgctttacggttttttgccgtatgtacgcccatcttcgcaaccgatgcaaagctacaagataaatttcaattcacccacaggctgcgtttaaattttattttttgattcaatgaagcagaattctaaatcatggtcagttggagaaaggcaatgctacatccatttaaaacttcgtagtctttcaccaaacttctactgaaattgaaaaccaccccaatattctttctacaatctattttggactctgtcttgcatatgggcagaatgtattatattgccccccataaacacacaaatatccagacagttatcaaaaatccaattcgcagaataccgtttatatgttgtataacatataaaaataatgattctaaaaagatccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttagggggagggctgcgcatgatattcccacaaaaactgaaggctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 cttccgttcttatttatgtttattccagagaccatatcagcaacgaagcatcttatcttaaacccatgctttacggttttttgccgtatgtacgcccatcttcgcaaccgatgcaaagctacaagataaatttcaattcacccacaggctgcgtttaaattttattttttgattcaatgaagcagaattctaaatcatggtcagttggagaaaggcaatgctacatccatttaaaacttcgtagtctttcaccaaacttctactgaaattgaaaaccaccccaatattctttctacaatctattttggactctgtcttgcatatgggcagaatgtattatattgccccccataaacacacaaatatccagacagttatcaaaaatccaattcgcagaataccgtttatatgttgtataacatataaaaataatgattctaaaaagatccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttagggggagggctgcgcatgatattcccacaaaaactgaaggctta Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 16 End: 126 ............... M F I P E T I S A T K H L I L N P C F T V F C R M Y A H L R N R C K A T R ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: + Start: 12 End: 155 ........... M Y V Y S R D H I S N E A S Y L K P M L Y G F L P Y V R P S S Q P M Q S Y K I N F N S P T G C V .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 35 Strand: + Start: 159 End: 263 .............................................................................................................................................................. M L F F D S M K Q N S K S W S V G E R Q C Y I H L K L R S L S P N F Y .................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 35 Strand: + Start: 312 End: 416 ....................................................................................................................................................................................................................................................................................................................... M S C I W A E C I I L P P I N T Q I S R Q L S K I Q F A E Y R L Y V V ......................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 263 End: 469 ...................................................................................................................................................................................................................................................................... M K L K T T P I F F L Q S I L D S V L H M G R M Y Y I A P H K H T N I Q T V I K N P I R R I P F I C C I T Y K N N D S K .................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 536 End: 631 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A H L F A D A I A S P Y P T K R L G G G L R M I F P Q K L K A .. Protein_Len: 43 Strand: + Start: 505 End: 633 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M V F Y Q F P C M I N R S F I C R R H S F P L P H Q A F R G R A A H D I P T K T E G L Protein_Len: 33 Strand: - Start: 519 End: 617 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N G Q I I F R E N I Q L R W L K G K G W W A N L P L A A C S I G M ................ Protein_Len: 51 Strand: - Start: 340 End: 492 ................................................................................................................................................................................................................................................................................................................................................... I A G W L C V F I W V T I L F G I R L I G N I H Q I V Y L F L S E L F I R L E A V K N Y D K I Y Y L M ............................................................................................................................................. Protein_Len: 53 Strand: - Start: 296 End: 454 ....................................................................................................................................................................................................................................................................................................... L R N Q V R D Q M H A S H I I N G G M F V C I D L C N D F I W N A S Y R K Y T T Y C I F I I I R F L D K M ................................................................................................................................................................................... Protein_Len: 47 Strand: - Start: 193 End: 333 ................................................................................................................................................................................................ I M T L Q L F A I S C G N L V E Y D K V L S R S F N F V V G I N K R C D I K S E T K C I P L M ............................................................................................................................................................................................................................................................................................................ Protein_Len: 45 Strand: - Start: 3 End: 137 .. G N K N I N I G S V M D A V F C R I K F G H K V T K Q R I Y A W R R L R H L A V L Y I E M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ cttccgttcttatttatgtttattccagagaccatatcagcaacgaagcatcttatcttaaacccatgctttacggttttttgccgtatgtacgcccatcttcgcaaccgatgcaaagctacaagataaatttcaattcacccacaggctgcgtttaaattttattttttgattcaatgaagcagaattctaaatcatggtcagttggagaaaggcaatgctacatccatttaaaacttcgtagtctttcaccaaacttctactgaaattgaaaaccaccccaatattctttctacaatctattttggactctgtcttgcatatgggcagaatgtattatattgccccccataaacacacaaatatccagacagttatcaaaaatccaattcgcagaataccgtttatatgttgtataacatataaaaataatgattctaaaaagatccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttagggggagggctgcgcatgatattcccacaaaaactgaaggctta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ cttccgttcttatttatgtttattccagagaccatatcagcaacgaagcatcttatcttaaacccatgctttacggttttttgccgtatgtacgcccatcttcgcaaccgatgcaaagctacaagataaatttcaattcacccacaggctgcgtttaaattttattttttgattcaatgaagcagaattctaaatcatggtcagttggagaaaggcaatgctacatccatttaaaacttcgtagtctttcaccaaacttctactgaaattgaaaaccaccccaatattctttctacaatctattttggactctgtcttgcatatgggcagaatgtattatattgccccccataaacacacaaatatccagacagttatcaaaaatccaattcgcagaataccgtttatatgttgtataacatataaaaataatgattctaaaaagatccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttagggggagggctgcgcatgatattcccacaaaaactgaaggctta Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TF1982:TF1983|TF1982:TF1983:1,4-alpha-glucan branching enzyme:conserved hypothetical protein:->->:2134191..2134823 633 cttccgttcttatttatgtttattccagagaccatatcagcaacgaagcatcttatcttaaacccatgctttacggttttttgccgtatgtacgcccatcttcgcaaccgatgcaaagctacaagataaatttcaattcacccacaggctgcgtttaaattttattttttgattcaatgaagcagaattctaaatcatggtcagttggagaaaggcaatgctacatccatttaaaacttcgtagtctttcaccaaacttctactgaaattgaaaaccaccccaatattctttctacaatctattttggactctgtcttgcatatgggcagaatgtattatattgccccccataaacacacaaatatccagacagttatcaaaaatccaattcgcagaataccgtttatatgttgtataacatataaaaataatgattctaaaaagatccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttagggggagggctgcgcatgatattcccacaaaaactgaaggctta Intra-Species Hit: Count: 2 Min: 1 Max: 633 Len: 633 Subject: tfor_TF1982_TF1983|1,4-alpha-glucan branching enzyme:conserved hypothetical protein|POSITIVE:POSITIVE|[2134191,2134823]|633 HSP 1 e-value: 0.0 bit: 1255.0 Len: 633 Query Start:1 Query End:633 Subject Strand: POSITIVE Subject Start: 1 Subject End: 633 cttccgttcttatttatgtttattccagagaccatatcagcaacgaagcatcttatcttaaacccatgctttacggttttttgccgtatgtacgcccatcttcgcaaccgatgcaaagctacaagataaatttcaattcacccacaggctgcgtttaaattttattttttgattcaatgaagcagaattctaaatcatggtcagttggagaaaggcaatgctacatccatttaaaacttcgtagtctttcaccaaacttctactgaaattgaaaaccaccccaatattctttctacaatctattttggactctgtcttgcatatgggcagaatgtattatattgccccccataaacacacaaatatccagacagttatcaaaaatccaattcgcagaataccgtttatatgttgtataacatataaaaataatgattctaaaaagatccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttagggggagggctgcgcatgatattcccacaaaaactgaaggctta cttccgttcttatttatgtttattccagagaccatatcagcaacgaagcatcttatcttaaacccatgctttacggttttttgccgtatgtacgcccatcttcgcaaccgatgcaaagctacaagataaatttcaattcacccacaggctgcgtttaaattttattttttgattcaatgaagcagaattctaaatcatggtcagttggagaaaggcaatgctacatccatttaaaacttcgtagtctttcaccaaacttctactgaaattgaaaaccaccccaatattctttctacaatctattttggactctgtcttgcatatgggcagaatgtattatattgccccccataaacacacaaatatccagacagttatcaaaaatccaattcgcagaataccgtttatatgttgtataacatataaaaataatgattctaaaaagatccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttagggggagggctgcgcatgatattcccacaaaaactgaaggctta Subject: tfor_TF1904_TF1905|two-component system response regulator:conserved hypothetical protein|POSITIVE:POSITIVE|[2059796,2060071]|276 HSP 1 e-value: 5.0E-99 bit: 363.0 Len: 187 Query Start:447 Query End:633 Subject Strand: POSITIVE Subject Start: 90 Subject End: 276 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................tccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttagggggagggctgcgcatgatattcccacaaaaactgaaggctta ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................tccttaattccgcaactttattataatccttgatatagtaaagcactaattaaatttcatagtattttatcaatttccttgtatgataaatcgctcatttatttgcagacgccatagcttccccttaccccaccaagcgtttaaggggagggctgcgcatgatattcccacaaaaactgaaggctta Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUCCGUUCUUAUUUAUGUUUAUUCCAGAGACCAUAUCAGCAACGAAGCAUCUUAUCUUAAACCCAUGCUUUACGGUUUUUUGCCGUAUGUACGCCCAUCUUCGCAACCGAUGCAAAGCUACAAGAUAAAUUUCAAUUCACCCACAGGCUGCGUUUAAAUUUUAUUUUUUGAUUCAAUGAAGCAGAAUUCUAAAUCAUGGUCAGUUGGAGAAAGGCAAUGCUACAUCCAUUUAAAACUUCGUAGUCUUUCACCAAACUUCUACUGAAAUUGAAAACCACCCCAAUAUUCUUUCUACAAUCUAUUUUGGACUCUGUCUUGCAUAUGGGCAGAAUGUAUUAUAUUGCCCCCCAUAAACACACAAAUAUCCAGACAGUUAUCAAAAAUCCAAUUCGCAGAAUACCGUUUAUAUGUUGUAUAACAUAUAAAAAUAAUGAUUCUAAAAAGAUCCUUAAUUCCGCAACUUUAUUAUAAUCCUUGAUAUAGUAAAGCACUAAUUAAAUUUCAUAGUAUUUUAUCAAUUUCCUUGUAUGAUAAAUCGCUCAUUUAUUUGCAGACGCCAUAGCUUCCCCUUACCCCACCAAGCGUUUAGGGGGAGGGCUGCGCAUGAUAUUCCCACAAAAACUGAAGGCUUA ((((.(((.........((((.......)))).((((((((...(((((...(((((((.......(((..((((((.....)))))).))).......(((.(((.....))).)))....))))))).................(((((((..(((((.......(((((((.......((.(((((.....(((...((((((((.(((((((.(((...................))).))))))).))).......)))))...)))...............(((((.((.((((..((((((...((((((.(.((((((((((.(((...))).))))))...............))))).))))))...))))))....................((((((((((....))))))))))......)))).)).))))).....))))).))..((((((((((........))))))))))....)))))))......(((..(((((((((......)).)))))))..))).)))))..))))...)))...)))))(((((.((((............)))))))))....)).)))))).........))).))))..... (-123.18) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGCCUUCAGUUUUUGUGGGAAUAUCAUGCGCAGCCCUCCCCCUAAACGCUUGGUGGGGUAAGGGGAAGCUAUGGCGUCUGCAAAUAAAUGAGCGAUUUAUCAUACAAGGAAAUUGAUAAAAUACUAUGAAAUUUAAUUAGUGCUUUACUAUAUCAAGGAUUAUAAUAAAGUUGCGGAAUUAAGGAUCUUUUUAGAAUCAUUAUUUUUAUAUGUUAUACAACAUAUAAACGGUAUUCUGCGAAUUGGAUUUUUGAUAACUGUCUGGAUAUUUGUGUGUUUAUGGGGGGCAAUAUAAUACAUUCUGCCCAUAUGCAAGACAGAGUCCAAAAUAGAUUGUAGAAAGAAUAUUGGGGUGGUUUUCAAUUUCAGUAGAAGUUUGGUGAAAGACUACGAAGUUUUAAAUGGAUGUAGCAUUGCCUUUCUCCAACUGACCAUGAUUUAGAAUUCUGCUUCAUUGAAUCAAAAAAUAAAAUUUAAACGCAGCCUGUGGGUGAAUUGAAAUUUAUCUUGUAGCUUUGCAUCGGUUGCGAAGAUGGGCGUACAUACGGCAAAAAACCGUAAAGCAUGGGUUUAAGAUAAGAUGCUUCGUUGCUGAUAUGGUCUCUGGAAUAAACAUAAAUAAGAACGGAAG .....((((.((((((((((((((((((.((((((((((((((((((....)))).))))..))))...((....))..)))).....((((((((.((((((.........................((((((((...((((..((((((((((((((((((.........(((((((((...((.(((....))).))......((((((((((....))))))))))....)))))))))....))))))))))).((((.(((((.(((((.(((.((((((.((.(((.......))))).)))))).)))..))))))))))..)))).............(((((..((........))..)))))......)))))))..))))..))))))))..(((((.((((...((((.(((((((((((...((((((((((......)))..))))))).................((((.(((..(((((((....))))).))..)))..)))).))))))).).))).)))).....(((((.......)))))..)).)).))))).)))))).))).)))))))))))))..)))).(.......)....)))))))).)))) (-158.12) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 447 610 563 64 6 tfor:TF2746|5end_hypothetical_protein_2927996..2928226_POSITIVE 389 598 551 137 81 tfor:TF1763|5end_K+-dependent_Na+/Ca+_exchanger_related-protein_1900406..1900636_POSITIVE 372 600 552 152 90 tfor:TF0340|5end_hypothetical_protein_363893..364123_POSITIVE 368 610 562 165 105 tfor:TF2171|5end_hypothetical_protein_2345485..2345715_POSITIVE 368 610 562 165 105 tfor:TF2166|5end_hypothetical_protein_2342115..2342345_POSITIVE 367 608 564 57 1 tfor:TF1259|5end_hypothetical_protein_1338549..1338779_POSITIVE 367 88 41 56 5 tfor:TF0919|5end_conserved_hypothetical_protein_957541..957771_POSITIVE 366 120 71 95 42 tfor:TF2853|5end_2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase_3040172..3040402_POSITIVE 365 615 575 139 102 tfor:TF1274|5end_hypothetical_protein_1357621..1357851_POSITIVE 363 114 74 61 22 tfor:TF2099|5end_D-tyrosyl-tRNA(Tyr)_deacylase_2272896..2273126_POSITIVE 361 587 551 58 24 tfor:TF2724|5end_anti-sigma_factor_2898193..2898423_POSITIVE 361 598 554 218 174 tfor:TF0643|5end_probable_tRNA_methyltransferase_684195..684425_POSITIVE 360 570 524 220 181 tfor:TF2772|5end_tRNA_pseudouridine_synthase_B_2957383..2957613_POSITIVE 355 603 564 39 3 tfor:TF2640|5end_hypothetical_protein_2809106..2809336_POSITIVE 354 607 568 69 30 tfor:TF1606|5end_outer_membrane_protein_1722352..1722582_POSITIVE 353 125 83 92 52 tfor:TF2187|5end_conserved_hypothetical_protein_2361693..2361923_POSITIVE 352 615 581 150 117 tfor:TF2410|5end_possible_endo-1,4-beta-xylanase_2584000..2584230_POSITIVE 352 626 582 226 171 tfor:TF1787|5end_conserved_hypothetical_protein_1926377..1926607_POSITIVE 348 110 64 221 167 tfor:TF1924|5end_prenyltransferase,_UbiA_family_2072857..2073087_POSITIVE 346 600 552 158 96 tfor:TF2172|5end_hypothetical_protein_2345822..2346052_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 394 608 562 90 40 tfor:TF1588|3end_hypothetical_protein_1702560..1702710_POSITIVE 372 608 562 34 1 tfor:TF1590|3end_hypothetical_protein_1706043..1706193_POSITIVE 366 120 71 64 11 tfor:TF2852|3end_conserved_hypothetical_protein_3040221..3040371_POSITIVE 361 600 556 63 27 tfor:TF0828|3end_hypothetical_protein_887508..887658_POSITIVE 354 607 568 51 12 tfor:TF1605|3end_outer_membrane_protein,_TonB_dependent_receptor_1722414..1722564_POSITIVE 342 608 562 50 1 tfor:TF2171|3end_hypothetical_protein_2345792..2345942_POSITIVE 337 599 552 51 1 tfor:TF1592|3end_hypothetical_protein_1708557..1708707_POSITIVE 336 120 71 135 88 tfor:TF3106|3end_hypothetical_protein_3338608..3338758_POSITIVE 336 601 565 140 96 tfor:TF2442|3end_heat_shock_protein_60_2620271..2620421_POSITIVE 334 119 73 151 108 tfor:TF2831|3end_ABC_transporter,_permease_component_3022671..3022821_POSITIVE 333 608 565 58 11 tfor:TF1169|3end_lipoprotein_ABC_transporter,_permease_component_1251573..1251723_POSITIVE 330 603 564 75 30 tfor:TF1362|3end_hypothetical_protein_1444059..1444209_POSITIVE 330 607 579 115 77 tfor:TF0880|3end_conserved_hypothetical_protein_934371..934521_POSITIVE 329 114 93 27 4 tfor:TF2098|3end_excinuclease_ABC,_subunit_C_2272942..2273092_POSITIVE 329 599 551 127 74 tfor:TF1154|3end_RNA_pseudouridylate_synthetase_1236822..1236972_POSITIVE 326 619 572 80 36 tfor:TF0419|3end_conserved_hypothetical_protein_435794..435944_POSITIVE 324 79 40 108 66 tfor:TF1425|3end_phospho-N-acetylmuramoyl_pentapeptide_transferase_1509942..1510092_POSITIVE 323 609 561 140 78 tfor:TF2843|3end_conserved_hypothetical_protein;_possible_lipoprotein_3033760..3033910_POSITIVE 320 599 557 111 72 tfor:TF1046|3end_hypothetical_protein_1108446..1108596_POSITIVE 319 597 552 150 103 tfor:TF1168|3end_hypothetical_protein_1249092..1249242_POSITIVE