Origin IGS: aacctgtattcatgcgaccccagttcctaagaccaattataataaaacagagagcgtggaacttgtatgtgccacgtcttaacgagaagatgataggaaaaacctttgtaagcagatgtggattaacagtcccacgcggatgtgtggagaccattacaccattctcttacttacgtgagttaagtttcctaggcttttctcgtacaagaagaagacataacgcctctaaatattctgtccgaatatagcttgtgccaaattcgttgcaaaagtaatgttttttttattgagatttatacctttatacggattttttcttactggcacatctcttttcaaaccgtcagactccctcccccgttttccaaaggattttgtcctctgcctgttgcaccagcatttgcagattcgcgttctcggccggtcgatagtcaataatcgcattgattctgtcgactttttcagaaaaacaattccctatcgcaaattgtaaccattatgttacctaaccactcgaaaacacaatataacagattgataatgcggatgatataaatttatttggcatatcagcccatcttcctgattgatccgaaagaggtgaaagcgtatcgcagcgatatcgaatttatccggtacggcgcttcggaaggtgtaaagcgactca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgagtcgctttacaccttccgaagcgccgtaccggataaattcgatatcgctgcgatacgctttcacctctttcggatcaatcaggaagatgggctgatatgccaaataaatttatatcatccgcattatcaatctgttatattgtgttttcgagtggttaggtaacataatggttacaatttgcgatagggaattgtttttctgaaaaagtcgacagaatcaatgcgattattgactatcgaccggccgagaacgcgaatctgcaaatgctggtgcaacaggcagaggacaaaatcctttggaaaacgggggagggagtctgacggtttgaaaagagatgtgccagtaagaaaaaatccgtataaaggtataaatctcaataaaaaaaacattacttttgcaacgaatttggcacaagctatattcggacagaatatttagaggcgttatgtcttcttcttgtacgagaaaagcctaggaaacttaactcacgtaagtaagagaatggtgtaatggtctccacacatccgcgtgggactgttaatccacatctgcttacaaaggtttttcctatcatcttctcgttaagacgtggcacatacaagttccacgctctctgttttattataattggtcttaggaactggggtcgcatgaatacaggtt Mask Tandem Repeat Region ================================================ aacctgtattcatgcgaccccagttcctaagaccaattataataaaacagagagcgtggaacttgtatgtgccacgtcttaacgagaagatgataggaaaaacctttgtaagcagatgtggattaacagtcccacgcggatgtgtggagaccattacaccattctcttacttacgtgagttaagtttcctaggcttttctcgtacaagaagaagacataacgcctctaaatattctgtccgaatatagcttgtgccaaattcgttgcaaaagtaatgttttttttattgagatttatacctttatacggattttttcttactggcacatctcttttcaaaccgtcagactccctcccccgttttccaaaggattttgtcctctgcctgttgcaccagcatttgcagattcgcgttctcggccggtcgatagtcaataatcgcattgattctgtcgactttttcagaaaaacaattccctatcgcaaattgtaaccattatgttacctaaccactcgaaaacacaatataacagattgataatgcggatgatataaatttatttggcatatcagcccatcttcctgattgatccgaaagaggtgaaagcgtatcgcagcgatatcgaatttatccggtacggcgcttcggaaggtgtaaagcgactca Find is-nt database================================================ Query_seq: TF1924:TF1926|TF1924:TF1926:prenyltransferase, UbiA family:hypothetical protein:->->:2073888..2074554 667 aacctgtattcatgcgaccccagttcctaagaccaattataataaaacagagagcgtggaacttgtatgtgccacgtcttaacgagaagatgataggaaaaacctttgtaagcagatgtggattaacagtcccacgcggatgtgtggagaccattacaccattctcttacttacgtgagttaagtttcctaggcttttctcgtacaagaagaagacataacgcctctaaatattctgtccgaatatagcttgtgccaaattcgttgcaaaagtaatgttttttttattgagatttatacctttatacggattttttcttactggcacatctcttttcaaaccgtcagactccctcccccgttttccaaaggattttgtcctctgcctgttgcaccagcatttgcagattcgcgttctcggccggtcgatagtcaataatcgcattgattctgtcgactttttcagaaaaacaattccctatcgcaaattgtaaccattatgttacctaaccactcgaaaacacaatataacagattgataatgcggatgatataaatttatttggcatatcagcccatcttcctgattgatccgaaagaggtgaaagcgtatcgcagcgatatcgaatttatccggtacggcgcttcggaaggtgtaaagcgactca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1924:TF1926|TF1924:TF1926:prenyltransferase, UbiA family:hypothetical protein:->->:2073888..2074554 667 aacctgtattcatgcgaccccagttcctaagaccaattataataaaacagagagcgtggaacttgtatgtgccacgtcttaacgagaagatgataggaaaaacctttgtaagcagatgtggattaacagtcccacgcggatgtgtggagaccattacaccattctcttacttacgtgagttaagtttcctaggcttttctcgtacaagaagaagacataacgcctctaaatattctgtccgaatatagcttgtgccaaattcgttgcaaaagtaatgttttttttattgagatttatacctttatacggattttttcttactggcacatctcttttcaaaccgtcagactccctcccccgttttccaaaggattttgtcctctgcctgttgcaccagcatttgcagattcgcgttctcggccggtcgatagtcaataatcgcattgattctgtcgactttttcagaaaaacaattccctatcgcaaattgtaaccattatgttacctaaccactcgaaaacacaatataacagattgataatgcggatgatataaatttatttggcatatcagcccatcttcctgattgatccgaaagaggtgaaagcgtatcgcagcgatatcgaatttatccggtacggcgcttcggaaggtgtaaagcgactca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1924:TF1926|TF1924:TF1926:prenyltransferase, UbiA family:hypothetical protein:->->:2073888..2074554 667 aacctgtattcatgcgaccccagttcctaagaccaattataataaaacagagagcgtggaacttgtatgtgccacgtcttaacgagaagatgataggaaaaacctttgtaagcagatgtggattaacagtcccacgcggatgtgtggagaccattacaccattctcttacttacgtgagttaagtttcctaggcttttctcgtacaagaagaagacataacgcctctaaatattctgtccgaatatagcttgtgccaaattcgttgcaaaagtaatgttttttttattgagatttatacctttatacggattttttcttactggcacatctcttttcaaaccgtcagactccctcccccgttttccaaaggattttgtcctctgcctgttgcaccagcatttgcagattcgcgttctcggccggtcgatagtcaataatcgcattgattctgtcgactttttcagaaaaacaattccctatcgcaaattgtaaccattatgttacctaaccactcgaaaacacaatataacagattgataatgcggatgatataaatttatttggcatatcagcccatcttcctgattgatccgaaagaggtgaaagcgtatcgcagcgatatcgaatttatccggtacggcgcttcggaaggtgtaaagcgactca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aacctgtattcatgcgaccccagttcctaagaccaattataataaaacagagagcgtggaacttgtatgtgccacgtcttaacgagaagatgataggaaaaacctttgtaagcagatgtggattaacagtcccacgcggatgtgtggagaccattacaccattctcttacttacgtgagttaagtttcctaggcttttctcgtacaagaagaagacataacgcctctaaatattctgtccgaatatagcttgtgccaaattcgttgcaaaagtaatgttttttttattgagatttatacctttatacggattttttcttactggcacatctcttttcaaaccgtcagactccctcccccgttttccaaaggattttgtcctctgcctgttgcaccagcatttgcagattcgcgttctcggccggtcgatagtcaataatcgcattgattctgtcgactttttcagaaaaacaattccctatcgcaaattgtaaccattatgttacctaaccactcgaaaacacaatataacagattgataatgcggatgatataaatttatttggcatatcagcccatcttcctgattgatccgaaagaggtgaaagcgtatcgcagcgatatcgaatttatccggtacggcgcttcggaaggtgtaaagcgactca Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 12 End: 245 ........... M R P Q F L R P I I I K Q R A W N L Y V P R L N E K M I G K T F V S R C G L T V P R G C V E T I T P F S Y L R E L S F L ...................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 321 End: 428 ................................................................................................................................................................................................................................................................................................................................ M A H L F S N R Q T P S P V F Q R I L S S A C C T S I C R F A F S A G R ............................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 217 End: 435 ........................................................................................................................................................................................................................ M T P L N I L S E Y S L C Q I R C K S N V F F I E I Y T F I R I F S Y W H I S F Q T V R L P P P F S K G F C P L P V A P ........................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 230 End: 490 ..................................................................................................................................................................................................................................... M F C P N I A C A K F V A K V M F F L L R F I P L Y G F F L T G T S L F K P S D S L P R F P K D F V L C L L H Q H L Q I ................................................................................................................................................................................. Protein_Len: 37 Strand: + Start: 556 End: 666 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Y L A Y Q P I F L I D P K E V K A Y R S D I E F I R Y G A S E G V K R L . Protein_Len: 40 Strand: - Start: 509 End: 628 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ G S S F V I Y C I S L A S S I F K N P M D A W R G S Q D S L P S L T D C R Y R M ....................................... Protein_Len: 39 Strand: - Start: 505 End: 621 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ R V V R F C L I V S Q Y H P H Y L N I Q C I L G D E Q N I R F L H F R I A A M .............................................. Protein_Len: 31 Strand: - Start: 465 End: 557 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ F F L E R D C I T V M I N G L W E F V C Y L L N I I R I I Y M .............................................................................................................. Protein_Len: 45 Strand: - Start: 347 End: 481 .......................................................................................................................................................................................................................................................................................................................................................... V G E G T K W L I K D E A Q Q V L M Q L N A N E A P R Y D I I A N I R D V K E S F C N G M .......................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 229 End: 474 .................................................................................................................................................................................................................................... I G K Y P N K R V P V D R K L G D S E R G R K G F S K T R Q R N C W C K C I R T R P R D I T L L R M S E T S K K L F V M ................................................................................................................................................................................................. Protein_Len: 34 Strand: - Start: 192 End: 293 ............................................................................................................................................................................................... A K R T C S S S M V G R F I R D S Y L K H W I R Q L L L T K K I S M ...................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 51 Strand: - Start: 2 End: 154 . G T N M R G W N R L G I I I F C L A H F K Y T G R R L S F I I P F V K T L L H P N V T G R P H T S V M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. aacctgtattcatgcgaccccagttcctaagaccaattataataaaacagagagcgtggaacttgtatgtgccacgtcttaacgagaagatgataggaaaaacctttgtaagcagatgtggattaacagtcccacgcggatgtgtggagaccattacaccattctcttacttacgtgagttaagtttcctaggcttttctcgtacaagaagaagacataacgcctctaaatattctgtccgaatatagcttgtgccaaattcgttgcaaaagtaatgttttttttattgagatttatacctttatacggattttttcttactggcacatctcttttcaaaccgtcagactccctcccccgttttccaaaggattttgtcctctgcctgttgcaccagcatttgcagattcgcgttctcggccggtcgatagtcaataatcgcattgattctgtcgactttttcagaaaaacaattccctatcgcaaattgtaaccattatgttacctaaccactcgaaaacacaatataacagattgataatgcggatgatataaatttatttggcatatcagcccatcttcctgattgatccgaaagaggtgaaagcgtatcgcagcgatatcgaatttatccggtacggcgcttcggaaggtgtaaagcgactca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aacctgtattcatgcgaccccagttcctaagaccaattataataaaacagagagcgtggaacttgtatgtgccacgtcttaacgagaagatgataggaaaaacctttgtaagcagatgtggattaacagtcccacgcggatgtgtggagaccattacaccattctcttacttacgtgagttaagtttcctaggcttttctcgtacaagaagaagacataacgcctctaaatattctgtccgaatatagcttgtgccaaattcgttgcaaaagtaatgttttttttattgagatttatacctttatacggattttttcttactggcacatctcttttcaaaccgtcagactccctcccccgttttccaaaggattttgtcctctgcctgttgcaccagcatttgcagattcgcgttctcggccggtcgatagtcaataatcgcattgattctgtcgactttttcagaaaaacaattccctatcgcaaattgtaaccattatgttacctaaccactcgaaaacacaatataacagattgataatgcggatgatataaatttatttggcatatcagcccatcttcctgattgatccgaaagaggtgaaagcgtatcgcagcgatatcgaatttatccggtacggcgcttcggaaggtgtaaagcgactca Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 48 HP_score: -3.0 Tail_Score: -3.58542 Start: 52 End: 78 Full_Region: tcatcttctcgttaa gacgtggcac atacaa gttccacgctc tctgttttattataa ...................................................gacgtggcacatacaagttccacgctc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: TF1924:TF1926|TF1924:TF1926:prenyltransferase, UbiA family:hypothetical protein:->->:2073888..2074554 667 aacctgtattcatgcgaccccagttcctaagaccaattataataaaacagagagcgtggaacttgtatgtgccacgtcttaacgagaagatgataggaaaaacctttgtaagcagatgtggattaacagtcccacgcggatgtgtggagaccattacaccattctcttacttacgtgagttaagtttcctaggcttttctcgtacaagaagaagacataacgcctctaaatattctgtccgaatatagcttgtgccaaattcgttgcaaaagtaatgttttttttattgagatttatacctttatacggattttttcttactggcacatctcttttcaaaccgtcagactccctcccccgttttccaaaggattttgtcctctgcctgttgcaccagcatttgcagattcgcgttctcggccggtcgatagtcaataatcgcattgattctgtcgactttttcagaaaaacaattccctatcgcaaattgtaaccattatgttacctaaccactcgaaaacacaatataacagattgataatgcggatgatataaatttatttggcatatcagcccatcttcctgattgatccgaaagaggtgaaagcgtatcgcagcgatatcgaatttatccggtacggcgcttcggaaggtgtaaagcgactca Intra-Species Hit: Count: 1 Min: 1 Max: 667 Len: 667 Subject: tfor_TF1924_TF1926|prenyltransferase, UbiA family:hypothetical protein|POSITIVE:POSITIVE|[2073888,2074554]|667 HSP 1 e-value: 0.0 bit: 1275.0 Len: 667 Query Start:1 Query End:667 Subject Strand: POSITIVE Subject Start: 1 Subject End: 667 aacctgtattcatgcgaccccagttcctaagaccaattataataaaacagagagcgtggaacttgtatgtgccacgtcttaacgagaagatgataggaaaaacctttgtaagcagatgtggattaacagtcccacgcggatgtgtggagaccattacaccattctcttacttacgtgagttaagtttcctaggcttttctcgtacaagaagaagacataacgcctctaaatattctgtccgaatatagcttgtgccaaattcgttgcaaaagtaatgnnnnnnnnattgagatttatacctttatacggattttttcttactggcacatctcttttcaaaccgtcagactccctcccccgttttccaaaggattttgtcctctgcctgttgcaccagcatttgcagattcgcgttctcggccggtcgatagtcaataatcgcattgattctgtcgactttttcagaaaaacaattccctatcgcaaattgtaaccattatgttacctaaccactcgaaaacacaatataacagattgataatgcggatgatataaatttatttggcatatcagcccatcttcctgattgatccgaaagaggtgaaagcgtatcgcagcgatatcgaatttatccggtacggcgcttcggaaggtgtaaagcgactca aacctgtattcatgcgaccccagttcctaagaccaattataataaaacagagagcgtggaacttgtatgtgccacgtcttaacgagaagatgataggaaaaacctttgtaagcagatgtggattaacagtcccacgcggatgtgtggagaccattacaccattctcttacttacgtgagttaagtttcctaggcttttctcgtacaagaagaagacataacgcctctaaatattctgtccgaatatagcttgtgccaaattcgttgcaaaagtaatgttttttttattgagatttatacctttatacggattttttcttactggcacatctcttttcaaaccgtcagactccctcccccgttttccaaaggattttgtcctctgcctgttgcaccagcatttgcagattcgcgttctcggccggtcgatagtcaataatcgcattgattctgtcgactttttcagaaaaacaattccctatcgcaaattgtaaccattatgttacctaaccactcgaaaacacaatataacagattgataatgcggatgatataaatttatttggcatatcagcccatcttcctgattgatccgaaagaggtgaaagcgtatcgcagcgatatcgaatttatccggtacggcgcttcggaaggtgtaaagcgactca Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AACCUGUAUUCAUGCGACCCCAGUUCCUAAGACCAAUUAUAAUAAAACAGAGAGCGUGGAACUUGUAUGUGCCACGUCUUAACGAGAAGAUGAUAGGAAAAACCUUUGUAAGCAGAUGUGGAUUAACAGUCCCACGCGGAUGUGUGGAGACCAUUACACCAUUCUCUUACUUACGUGAGUUAAGUUUCCUAGGCUUUUCUCGUACAAGAAGAAGACAUAACGCCUCUAAAUAUUCUGUCCGAAUAUAGCUUGUGCCAAAUUCGUUGCAAAAGUAAUGUUUUUUUUAUUGAGAUUUAUACCUUUAUACGGAUUUUUUCUUACUGGCACAUCUCUUUUCAAACCGUCAGACUCCCUCCCCCGUUUUCCAAAGGAUUUUGUCCUCUGCCUGUUGCACCAGCAUUUGCAGAUUCGCGUUCUCGGCCGGUCGAUAGUCAAUAAUCGCAUUGAUUCUGUCGACUUUUUCAGAAAAACAAUUCCCUAUCGCAAAUUGUAACCAUUAUGUUACCUAACCACUCGAAAACACAAUAUAACAGAUUGAUAAUGCGGAUGAUAUAAAUUUAUUUGGCAUAUCAGCCCAUCUUCCUGAUUGAUCCGAAAGAGGUGAAAGCGUAUCGCAGCGAUAUCGAAUUUAUCCGGUACGGCGCUUCGGAAGGUGUAAAGCGACUCA ............(((.((.((..((((.(((.((...............(((((((((((......((((((((.(((((((((((((((...(((((((.......(((((.(((.((((..(((..(((((((((....)))))).)))..)))..))))))))))))..((....))....)))))))...)))))))))....(((((((((((.((........((((((.....))))))...((((..(......)..))))..)).)))))))))))..)))))).....((.......))............)))))))).............(.((((.(((.................))).)))).).(((((....(((....)))...)))))))))))))))).(((((((((((((((((......)))))..))))))))..............(((((..((((((.....(((((......)))))...(((...........((((.....(((((((((.(((((((((.......)))))).))))))))....)))).....))))...(....).)))....(((...))).))))))..)))))....))))..))..))).)))))).))...)))..... (-164.53) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAGUCGCUUUACACCUUCCGAAGCGCCGUACCGGAUAAAUUCGAUAUCGCUGCGAUACGCUUUCACCUCUUUCGGAUCAAUCAGGAAGAUGGGCUGAUAUGCCAAAUAAAUUUAUAUCAUCCGCAUUAUCAAUCUGUUAUAUUGUGUUUUCGAGUGGUUAGGUAACAUAAUGGUUACAAUUUGCGAUAGGGAAUUGUUUUUCUGAAAAAGUCGACAGAAUCAAUGCGAUUAUUGACUAUCGACCGGCCGAGAACGCGAAUCUGCAAAUGCUGGUGCAACAGGCAGAGGACAAAAUCCUUUGGAAAACGGGGGAGGGAGUCUGACGGUUUGAAAAGAGAUGUGCCAGUAAGAAAAAAUCCGUAUAAAGGUAUAAAUCUCAAUAAAAAAAACAUUACUUUUGCAACGAAUUUGGCACAAGCUAUAUUCGGACAGAAUAUUUAGAGGCGUUAUGUCUUCUUCUUGUACGAGAAAAGCCUAGGAAACUUAACUCACGUAAGUAAGAGAAUGGUGUAAUGGUCUCCACACAUCCGCGUGGGACUGUUAAUCCACAUCUGCUUACAAAGGUUUUUCCUAUCAUCUUCUCGUUAAGACGUGGCACAUACAAGUUCCACGCUCUCUGUUUUAUUAUAAUUGGUCUUAGGAACUGGGGUCGCAUGAAUACAGGUU .............((((..((((...(((...))).....))))...(((.((((((.........((..((((((((((((((((((((.((((....(((((...(((((.....((....(((...((((.(((((...(((((((((((..((((...(((((......)))))......((((((..((((((..(((((..........))))).....)))))).....))))))))))..))))))))))).(((((...(((....)))....))))).(((....(((((((.....)))))))....))).))))).))))...((((((((((......................)))))..)))))....................)))..(((((.((((....)))).)))))....))..)))))..)))))...)))))))))))).(((((((.....(((((((...((((...(((((((.((...(((..((((((((.((((.(....).))))))))))))..)))..)))))))))...))))))))))).....)))))))..((((((((.((......)).))))).))).............))))))))..))))..)).)))))))))....)))). (-184.75) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 461 429 385 69 8 tfor:TF2813|5end_possible_flavoprotein_A_3003285..3003515_POSITIVE 412 429 382 210 145 tfor:TF2820|5end_argininosuccinate_synthetase_3009876..3010106_POSITIVE 402 655 613 85 36 tfor:TF1067|5end_conserved_hypothetical_protein_1136867..1137097_POSITIVE 401 427 383 224 169 tfor:TF0509|5end_2-oxoglutarate_oxidoreductase,_gamma_subunit_535579..535809_POSITIVE 398 640 592 228 174 tfor:TF1261|5end_GrpE-related_chaperonin;_HSP-70_cofactor_1346504..1346734_POSITIVE 398 649 609 51 9 tfor:TF0248|5end_hypothetical_protein_278249..278479_POSITIVE 395 649 601 184 121 tfor:TF1043|5end_conserved_hypothetical_protein;_possible_hydrolase_1105282..1105512_POSITIVE 390 427 385 77 36 tfor:TF0056|5end_integrase_frangment,_C-terminal_59074..59304_POSITIVE 388 388 342 58 19 tfor:TF1908|5end_possible_phosphoglycerate_mutase_2062695..2062925_POSITIVE 383 428 382 200 151 tfor:TF2166|5end_hypothetical_protein_2342115..2342345_POSITIVE 382 657 611 153 100 tfor:TF0243|5end_conserved_hypothetical_protein_273728..273958_POSITIVE 380 427 383 164 120 tfor:TF3022|5end_chorismate_synthase_3246136..3246366_POSITIVE 378 660 614 58 16 tfor:TF2370|5end_tRNA_delta-2_isopentenylpyrophosphate_transferase_2536068..2536298_POSITIVE 376 619 573 84 39 tfor:TF2296|5end_hypothetical_protein_2448892..2449122_POSITIVE 376 429 382 196 151 tfor:TF2171|5end_hypothetical_protein_2345485..2345715_POSITIVE 374 626 583 171 131 tfor:TF1243|5end_periplasmic_protease_1327243..1327473_POSITIVE 373 443 402 226 179 tfor:TF2307|5end_two-component_system_sensor_histidine_kinase/response_2462618..2462848_POSITIVE 373 427 381 171 124 tfor:TF2187|5end_conserved_hypothetical_protein_2361693..2361923_POSITIVE 372 423 383 130 87 tfor:TF3105|5end_hypothetical_protein_3338068..3338298_POSITIVE 372 660 611 57 21 tfor:TF1927|5end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_2075037..2075267_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 414 429 391 52 10 tfor:TF2812|3end_hypothetical_protein_3003348..3003498_POSITIVE 400 654 612 138 93 tfor:TF2850|3end_endoribonuclease_L-PSP_3038871..3039021_POSITIVE 398 649 609 70 28 tfor:TF0247|3end_conserved_hypothetical_protein_278348..278498_POSITIVE 395 649 601 117 54 tfor:TF1042|3end_possible_surface_antigen_with_leucine-rich_repeat_1105295..1105445_POSITIVE 390 427 385 146 105 tfor:TF0055|3end_integrase_fragment,_N-terminal_59223..59373_POSITIVE 380 427 383 142 98 tfor:TF3021|3end_FKBP-type_peptidyl-prolyl_cis-trans_isomerase_3246194..3246344_POSITIVE 375 426 386 139 99 tfor:TF0757|3end_50S_ribosomal_protein_L25;_general_stress_protein_805293..805443_POSITIVE 372 660 611 41 5 tfor:TF1925|3end_hypothetical_protein_2075101..2075251_POSITIVE 369 427 381 59 25 tfor:TF0413|3end_succinyl-diaminopimelate_desuccinylase_431869..432019_POSITIVE 366 437 402 48 1 tfor:TF0994|3end_maltose_O-acetyltransferase_1049782..1049932_POSITIVE 361 80 48 65 34 tfor:TF2967|3end_hypothetical_protein_3178000..3178150_POSITIVE 352 657 611 124 71 tfor:TF3099|3end_conserved_hypothetical_protein_3331107..3331257_POSITIVE 352 656 611 128 74 tfor:TF1908|3end_possible_phosphoglycerate_mutase_2063299..2063449_POSITIVE 348 444 407 150 113 tfor:TF0717|3end_signal_recognition_particle_769059..769209_POSITIVE 345 424 381 151 99 tfor:TF0764|3end_conserved_hypothetical_protein;_possible_exopolyphosphatase-related_protein_811371..811521_POSITIVE 345 428 381 133 95 tfor:TF0666|3end_conserved_hypothetical_protein_710945..711095_POSITIVE 344 427 383 52 2 tfor:TF1334|3end_hypothetical_protein_1416423..1416573_POSITIVE 342 657 613 138 85 tfor:TF0010|3end_conserved_hypothetical_protein_4790..4940_POSITIVE 341 450 403 75 33 tfor:TF3113|3end_hypothetical_protein_3349706..3349856_POSITIVE 340 659 613 71 28 tfor:TF2176|3end_hypothetical_protein_2349185..2349335_POSITIVE