Origin IGS: aatctataatatagtccgtattggtatctaattgtcccgattgtaataatgtatccagaggagaggctcatttactttctctgcggaattaaaattataagacttgttcaaagagtggactcataggtaatattgtctgtcttgagctcatctatcgccctgagtatagtatcggaagagcaagttcgcaaggaaggatgaattcaggcgggacaggccgtggcgacacataaggccgtccacccccgcaacgaataaccgtatgctttccggcactggccttatcgacggcacgatacagtaacggtatccgcctggcctgtatcgtgccgtatcggtttagcggctcacatagtcgtcgaagtatttgcagtatgtacaggcatctttgtagaaggccgtttctttatactgcacaagctgattgaaataattcaccgtttcggcgggtaaacccgcgacactttatgaacagaagatgctcttcgccgtcgctcccaaagaaaagtattaccacggtaaaaccatatgttttaagttcagttcgaacttatccgtaaacaatacaggcaaaaccgttaaaaacctccgggacaattttcatcatattgtatttgctgattgactctaccctgccctaatcaaaaaccgggaattggtatatcggaaagagttacgtatatttgtcgactttaaagattt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aaatctttaaagtcgacaaatatacgtaactctttccgatataccaattcccggtttttgattagggcagggtagagtcaatcagcaaatacaatatgatgaaaattgtcccggaggtttttaacggttttgcctgtattgtttacggataagttcgaactgaacttaaaacatatggttttaccgtggtaatacttttctttgggagcgacggcgaagagcatcttctgttcataaagtgtcgcgggtttacccgccgaaacggtgaattatttcaatcagcttgtgcagtataaagaaacggccttctacaaagatgcctgtacatactgcaaatacttcgacgactatgtgagccgctaaaccgatacggcacgatacaggccaggcggataccgttactgtatcgtgccgtcgataaggccagtgccggaaagcatacggttattcgttgcgggggtggacggccttatgtgtcgccacggcctgtcccgcctgaattcatccttccttgcgaacttgctcttccgatactatactcagggcgatagatgagctcaagacagacaatattacctatgagtccactctttgaacaagtcttataattttaattccgcagagaaagtaaatgagcctctcctctggatacattattacaatcgggacaattagataccaatacggactatattatagatt Mask Tandem Repeat Region ================================================ aatctataatatagtccgtattggtatctaattgtcccgattgtaataatgtatccagaggagaggctcatttactttctctgcggaattaaaattataagacttgttcaaagagtggactcataggtaatattgtctgtcttgagctcatctatcgccctgagtatagtatcggaagagcaagttcgcaaggaaggatgaattcaggcgggacaggccgtggcgacacataaggccgtccacccccgcaacgaataaccgtatgctttccggcactggccttatcgacggcacgatacagtaacggtatccgcctggcctgtatcgtgccgtatcggtttagcggctcacatagtcgtcgaagtatttgcagtatgtacaggcatctttgtagaaggccgtttctttatactgcacaagctgattgaaataattcaccgtttcggcgggtaaacccgcgacactttatgaacagaagatgctcttcgccgtcgctcccaaagaaaagtattaccacggtaaaaccatatgttttaagttcagttcgaacttatccgtaaacaatacaggcaaaaccgttaaaaacctccgggacaattttcatcatattgtatttgctgattgactctaccctgccctaatcaaaaaccgggaattggtatatcggaaagagttacgtatatttgtcgactttaaagattt Find is-nt database================================================ Query_seq: TF1905:TF1906|TF1905:TF1906:conserved hypothetical protein:conserved hypothetical protein:->->:2060393..2061094 702 aatctataatatagtccgtattggtatctaattgtcccgattgtaataatgtatccagaggagaggctcatttactttctctgcggaattaaaattataagacttgttcaaagagtggactcataggtaatattgtctgtcttgagctcatctatcgccctgagtatagtatcggaagagcaagttcgcaaggaaggatgaattcaggcgggacaggccgtggcgacacataaggccgtccacccccgcaacgaataaccgtatgctttccggcactggccttatcgacggcacgatacagtaacggtatccgcctggcctgtatcgtgccgtatcggtttagcggctcacatagtcgtcgaagtatttgcagtatgtacaggcatctttgtagaaggccgtttctttatactgcacaagctgattgaaataattcaccgtttcggcgggtaaacccgcgacactttatgaacagaagatgctcttcgccgtcgctcccaaagaaaagtattaccacggtaaaaccatatgttttaagttcagttcgaacttatccgtaaacaatacaggcaaaaccgttaaaaacctccgggacaattttcatcatattgtatttgctgattgactctaccctgccctaatcaaaaaccgggaattggtatatcggaaagagttacgtatatttgtcgactttaaagattt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1905:TF1906|TF1905:TF1906:conserved hypothetical protein:conserved hypothetical protein:->->:2060393..2061094 702 aatctataatatagtccgtattggtatctaattgtcccgattgtaataatgtatccagaggagaggctcatttactttctctgcggaattaaaattataagacttgttcaaagagtggactcataggtaatattgtctgtcttgagctcatctatcgccctgagtatagtatcggaagagcaagttcgcaaggaaggatgaattcaggcgggacaggccgtggcgacacataaggccgtccacccccgcaacgaataaccgtatgctttccggcactggccttatcgacggcacgatacagtaacggtatccgcctggcctgtatcgtgccgtatcggtttagcggctcacatagtcgtcgaagtatttgcagtatgtacaggcatctttgtagaaggccgtttctttatactgcacaagctgattgaaataattcaccgtttcggcgggtaaacccgcgacactttatgaacagaagatgctcttcgccgtcgctcccaaagaaaagtattaccacggtaaaaccatatgttttaagttcagttcgaacttatccgtaaacaatacaggcaaaaccgttaaaaacctccgggacaattttcatcatattgtatttgctgattgactctaccctgccctaatcaaaaaccgggaattggtatatcggaaagagttacgtatatttgtcgactttaaagattt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 5 Min: 58 Max: 203 Len: 146 Subject: UniRef90_Q6UCB3 Cluster: Transposase; n=1; Bacteroides fragilis|Rep: Transposase - Bacteroides fragilis HSP 1 e-value: 2.0E-7 bit: 48.9 Len: 87 Query Start:117 Query End:203 Subject Strand: null Subject Start: 78 Subject End: 106 .................................................................................................................... I H P S L R T C S S D T I L R A I D E L K T D N I T Y E S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................... L H P T L R T C S A D T I L R A I K E L A E D N I T Y T S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 23.5 Len: 48 Query Start:58 Query End:105 Subject Strand: null Subject Start: 110 Subject End: 125 ......................................................... K S Y N F N S A E K V N E P L L ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................... K T Y D F N A A E K L N A L L V ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: IS|IS942.aa1 HSP 1 e-value: 2.0E-6 bit: 48.1 Len: 87 Query Start:117 Query End:203 Subject Strand: null Subject Start: 78 Subject End: 106 .................................................................................................................... I H P S L R T C S S D T I L R A I D E L K T D N I T Y E S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................... L H P T L R T C S A D T I L R A I E E L T C K N I T Y K S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 21.2 Len: 33 Query Start:70 Query End:102 Subject Strand: null Subject Start: 113 Subject End: 123 ..................................................................... S Y N F N S A E K V N ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ..................................................................... S Y D F N T A D K M N ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q6B4Q4 Cluster: Transposase; n=5; Bacteroides fragilis|Rep: Transposase - Bacteroides fragilis HSP 1 e-value: 2.0E-6 bit: 46.2 Len: 84 Query Start:117 Query End:200 Subject Strand: null Subject Start: 80 Subject End: 107 .................................................................................................................... H P S L R T C S S D T I L R A I D E L K T D N I T Y E S ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................... H P T L R T C S S D T I L R A I K E L T Q E N I S Y T S ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 22.7 Len: 48 Query Start:58 Query End:105 Subject Strand: null Subject Start: 111 Subject End: 126 ......................................................... K S Y N F N S A E K V N E P L L ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................... K T Y D F N T A D K L N T L L I ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: IS|IS1170.aa1 HSP 1 e-value: 4.0E-6 bit: 43.9 Len: 90 Query Start:111 Query End:200 Subject Strand: null Subject Start: 79 Subject End: 108 .............................................................................................................. H P S L R T C S S D T I L R A I D E L K T D N I T Y E S T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................. H P V L R S C S A D T I L R A I K E L T V P N I T Y T S S V ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 23.9 Len: 48 Query Start:58 Query End:105 Subject Strand: null Subject Start: 111 Subject End: 126 ......................................................... K S Y N F N S A E K V N E P L L ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................... K S Y D F N M A D R M N E L L V ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q6UCB1 Cluster: Transposase; n=3; Bacteroides|Rep: Transposase - Bacteroides fragilis HSP 1 e-value: 7.0E-6 bit: 45.8 Len: 87 Query Start:117 Query End:203 Subject Strand: null Subject Start: 78 Subject End: 106 .................................................................................................................... I H P S L R T C S S D T I L R A I D E L K T D N I T Y E S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................... L H P T L R T C S S D T I L R A I K E L T Q G N I S Y T S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-6 bit: 21.2 Len: 48 Query Start:58 Query End:105 Subject Strand: null Subject Start: 110 Subject End: 125 ......................................................... K S Y N F N S A E K V N E P L L ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................... K N Y D F N T A D T L N T L L L ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find nr database================================================ Query_seq: TF1905:TF1906|TF1905:TF1906:conserved hypothetical protein:conserved hypothetical protein:->->:2060393..2061094 702 aatctataatatagtccgtattggtatctaattgtcccgattgtaataatgtatccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaggcgggacaggccgtggcgacacataaggccgtccacccccgcaacgaataaccgtatgctttccggcactggccttatcgacggcacgatacagtaacggtatccgcctggcctgtatcgtgccgtatcggtttagcggctcacatagtcgtcgaagtatttgcagtatgtacaggcatctttgtagaaggccgtttctttatactgcacaagctgattgaaataattcaccgtttcggcgggtaaacccgcgacactttatgaacagaagatgctcttcgccgtcgctcccaaagaaaagtattaccacggtaaaaccatatgttttaagttcagttcgaacttatccgtaaacaatacaggcaaaaccgttaaaaacctccgggacaattttcatcatattgtatttgctgattgactctaccctgccctaatcaaaaaccgggaattggtatatcggaaagagttacgtatatttgtcgactttaaagattt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aatctataatatagtccgtattggtatctaattgtcccgattgtaataatgtatccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaggcgggacaggccgtggcgacacataaggccgtccacccccgcaacgaataaccgtatgctttccggcactggccttatcgacggcacgatacagtaacggtatccgcctggcctgtatcgtgccgtatcggtttagcggctcacatagtcgtcgaagtatttgcagtatgtacaggcatctttgtagaaggccgtttctttatactgcacaagctgattgaaataattcaccgtttcggcgggtaaacccgcgacactttatgaacagaagatgctcttcgccgtcgctcccaaagaaaagtattaccacggtaaaaccatatgttttaagttcagttcgaacttatccgtaaacaatacaggcaaaaccgttaaaaacctccgggacaattttcatcatattgtatttgctgattgactctaccctgccctaatcaaaaaccgggaattggtatatcggaaagagttacgtatatttgtcgactttaaagattt Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 31 End: 123 .............................. M V P I V I M Y P E E R L I Y F L C G I K I I R L V Q R V D S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 123 End: 230 .......................................................................................................................... M G N I V C L E L I Y R P E Y S I G R A S S Q G R M N S G G T G R G D T ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 57 Strand: + Start: 255 End: 425 .............................................................................................................................................................................................................................................................. M T V C F P A L A L S T A R Y S N G I R L A C I V P Y R F S G S H S R R S I C S M Y R H L C R R P F L Y T A Q A D ..................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 334 End: 450 ............................................................................................................................................................................................................................................................................................................................................. M G L A A H I V V E V F A V C T G I F V E G R F F I L H K L I E I I H R F G G ............................................................................................................................................................................................................................................................ Protein_Len: 30 Strand: + Start: 468 End: 557 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N R R C S S P S L P K K S I T T V K P Y V L S S V R T Y P ................................................................................................................................................. Protein_Len: 48 Strand: + Start: 479 End: 622 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M L F A V A P K E K Y Y H G K T I C F K F S S N L S V N N T G K T V K N L R D N F H H I V F A D ................................................................................ Protein_Len: 31 Strand: - Start: 438 End: 530 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................... R K P P Y V R S V K H V S S A R R R R E W L F T N G R Y F W M ............................................................................................................................................................................ Protein_Len: 36 Strand: - Start: 410 End: 517 ......................................................................................................................................................................................................................................................................................................................................................................................................................... V A C A S Q F L E G N R R T F G R C K I F L L H E E G D S G F F L I V M ......................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 343 End: 438 ...................................................................................................................................................................................................................................................................................................................................................... R S V Y D D F Y K C Y T C A D K Y F A T E K Y Q V L Q N F Y N M ........................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 155 End: 382 .......................................................................................................................................................... E P P V P R P S V Y P R G G G C R I V T H K G A S A K D V A R Y L L P I R R A Q I T G Y R N L P E C L R R L I Q L I Y M ................................................................................................................................................................................................................................................................................................................................ Protein_Len: 49 Strand: - Start: 151 End: 297 ...................................................................................................................................................... R D G Q T Y Y R F L L N A L F S S N L R S L G H R C M L G D V G A V F L R I S E P V P R I S P V M ..................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: - Start: 111 End: 203 .............................................................................................................. L T S E Y T I N D T K L E D I A R L I T D S S C T R L S P H M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aatctataatatagtccgtattggtatctaattgtcccgattgtaataatgtatccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaggcgggacaggccgtggcgacacataaggccgtccacccccgcaacgaataaccgtatgctttccggcactggccttatcgacggcacgatacagtaacggtatccgcctggcctgtatcgtgccgtatcggtttagcggctcacatagtcgtcgaagtatttgcagtatgtacaggcatctttgtagaaggccgtttctttatactgcacaagctgattgaaataattcaccgtttcggcgggtaaacccgcgacactttatgaacagaagatgctcttcgccgtcgctcccaaagaaaagtattaccacggtaaaaccatatgttttaagttcagttcgaacttatccgtaaacaatacaggcaaaaccgttaaaaacctccgggacaattttcatcatattgtatttgctgattgactctaccctgccctaatcaaaaaccgggaattggtatatcggaaagagttacgtatatttgtcgactttaaagattt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 655 End: 684 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTATATCGGAAAGAGTTACGTATATT.................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aatctataatatagtccgtattggtatctaattgtcccgattgtaataatgtatccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaggcgggacaggccgtggcgacacataaggccgtccacccccgcaacgaataaccgtatgctttccggcactggccttatcgacggcacgatacagtaacggtatccgcctggcctgtatcgtgccgtatcggtttagcggctcacatagtcgtcgaagtatttgcagtatgtacaggcatctttgtagaaggccgtttctttatactgcacaagctgattgaaataattcaccgtttcggcgggtaaacccgcgacactttatgaacagaagatgctcttcgccgtcgctcccaaagaaaagtattaccacggtaaaaccatatgttttaagttcagttcgaacttatccgtaaacaatacaggcaaaaccgttaaaaacctccgggacaattttcatcatattgtatttgctgattgactctaccctgccctaatcaaaaaccgggaattggtatatcggaaagagttacgtatatttgtcgactttaaagattt Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TF1905:TF1906|TF1905:TF1906:conserved hypothetical protein:conserved hypothetical protein:->->:2060393..2061094 702 aatctataatatagtccgtattggtatctaattgtcccgattgtaataatgtatccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaggcgggacaggccgtggcgacacataaggccgtccacccccgcaacgaataaccgtatgctttccggcactggccttatcgacggcacgatacagtaacggtatccgcctggcctgtatcgtgccgtatcggtttagcggctcacatagtcgtcgaagtatttgcagtatgtacaggcatctttgtagaaggccgtttctttatactgcacaagctgattgaaataattcaccgtttcggcgggtaaacccgcgacactttatgaacagaagatgctcttcgccgtcgctcccaaagaaaagtattaccacggtaaaaccatatgttttaagttcagttcgaacttatccgtaaacaatacaggcaaaaccgttaaaaacctccgggacaattttcatcatattgtatttgctgattgactctaccctgccctaatcaaaaaccgggaattggtatatcggaaagagttacgtatatttgtcgactttaaagattt Intra-Species Hit: Count: 2 Min: 1 Max: 702 Len: 702 Subject: tfor_TF1905_TF1906|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2060393,2061094]|702 HSP 1 e-value: 0.0 bit: 989.0 Len: 499 Query Start:204 Query End:702 Subject Strand: POSITIVE Subject Start: 204 Subject End: 702 ...........................................................................................................................................................................................................tcaggcgggacaggccgtggcgacacataaggccgtccacccccgcaacgaataaccgtatgctttccggcactggccttatcgacggcacgatacagtaacggtatccgcctggcctgtatcgtgccgtatcggtttagcggctcacatagtcgtcgaagtatttgcagtatgtacaggcatctttgtagaaggccgtttctttatactgcacaagctgattgaaataattcaccgtttcggcgggtaaacccgcgacactttatgaacagaagatgctcttcgccgtcgctcccaaagaaaagtattaccacggtaaaaccatatgttttaagttcagttcgaacttatccgtaaacaatacaggcaaaaccgttaaaaacctccgggacaattttcatcatattgtatttgctgattgactctaccctgccctaatcaaaaaccgggaattggtatatcggaaagagttacgtatatttgtcgactttaaagattt ...........................................................................................................................................................................................................tcaggcgggacaggccgtggcgacacataaggccgtccacccccgcaacgaataaccgtatgctttccggcactggccttatcgacggcacgatacagtaacggtatccgcctggcctgtatcgtgccgtatcggtttagcggctcacatagtcgtcgaagtatttgcagtatgtacaggcatctttgtagaaggccgtttctttatactgcacaagctgattgaaataattcaccgtttcggcgggtaaacccgcgacactttatgaacagaagatgctcttcgccgtcgctcccaaagaaaagtattaccacggtaaaaccatatgttttaagttcagttcgaacttatccgtaaacaatacaggcaaaaccgttaaaaacctccgggacaattttcatcatattgtatttgctgattgactctaccctgccctaatcaaaaaccgggaattggtatatcggaaagagttacgtatatttgtcgactttaaagattt HSP 2 e-value: 9.0E-24 bit: 113.0 Len: 57 Query Start:1 Query End:57 Subject Strand: POSITIVE Subject Start: 1 Subject End: 57 aatctataatatagtccgtattggtatctaattgtcccgattgtaataatgtatcca..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aatctataatatagtccgtattggtatctaattgtcccgattgtaataatgtatcca..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1890_TF1891|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2043154,2043528]|375 HSP 1 e-value: 2.0E-37 bit: 159.0 Len: 100 Query Start:256 Query End:355 Subject Strand: NEGATIVE Subject Start: 276 Subject End: 375 ...............................................................................................................................................................................................................................................................taaccgtatgctttccggcactggccttatcgacggcacgatacagtaacggtatccgcctggcctgtatcgtgccgtatcggtttagcggctcacatag........................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................taactgtatgctttccggcaccgaccttatcgacggcacgatacagtaacggtatccgcccggtctgtatcgtgccgtatcggtttagcggctcacatag........................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUCUAUAAUAUAGUCCGUAUUGGUAUCUAAUUGUCCCGAUUGUAAUAAUGUAUCCAGAGGAGAGGCUCAUUUACUUUCUCUGCGGAAUUAAAAUUAUAAGACUUGUUCAAAGAGUGGACUCAUAGGUAAUAUUGUCUGUCUUGAGCUCAUCUAUCGCCCUGAGUAUAGUAUCGGAAGAGCAAGUUCGCAAGGAAGGAUGAAUUCAGGCGGGACAGGCCGUGGCGACACAUAAGGCCGUCCACCCCCGCAACGAAUAACCGUAUGCUUUCCGGCACUGGCCUUAUCGACGGCACGAUACAGUAACGGUAUCCGCCUGGCCUGUAUCGUGCCGUAUCGGUUUAGCGGCUCACAUAGUCGUCGAAGUAUUUGCAGUAUGUACAGGCAUCUUUGUAGAAGGCCGUUUCUUUAUACUGCACAAGCUGAUUGAAAUAAUUCACCGUUUCGGCGGGUAAACCCGCGACACUUUAUGAACAGAAGAUGCUCUUCGCCGUCGCUCCCAAAGAAAAGUAUUACCACGGUAAAACCAUAUGUUUUAAGUUCAGUUCGAACUUAUCCGUAAACAAUACAGGCAAAACCGUUAAAAACCUCCGGGACAAUUUUCAUCAUAUUGUAUUUGCUGAUUGACUCUACCCUGCCCUAAUCAAAAACCGGGAAUUGGUAUAUCGGAAAGAGUUACGUAUAUUUGUCGACUUUAAAGAUUU (((((.........((((...((((....((((((((((...((((((.....(((((((.((((.........))))))))).))..............(((..(((((.((((((........(((......(.((((..((((((...(((..(((.((((..((((..((((.(((((..(((....))).((....((((..(((((...(((((((....)))....)))).......)))))...))))..))...)))))))))..))))..))))...((((((((((((((....(((....)))....))))))))))))))...))).))).)))))).)))).).(((((((.(.(((((((((....(((.(((....)))..))).......))))))))).).)))..))))........)))......(((((....)))))..)))))).))))).((((.....))))...)))...............)))))).(((((....((........(((((((.....)))))))...(((.....))).))....)))))..........))))))))))...))))......................((((...(((............)))....))))...)))).(((((((((......))).))))))..))))). (-200.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAUCUUUAAAGUCGACAAAUAUACGUAACUCUUUCCGAUAUACCAAUUCCCGGUUUUUGAUUAGGGCAGGGUAGAGUCAAUCAGCAAAUACAAUAUGAUGAAAAUUGUCCCGGAGGUUUUUAACGGUUUUGCCUGUAUUGUUUACGGAUAAGUUCGAACUGAACUUAAAACAUAUGGUUUUACCGUGGUAAUACUUUUCUUUGGGAGCGACGGCGAAGAGCAUCUUCUGUUCAUAAAGUGUCGCGGGUUUACCCGCCGAAACGGUGAAUUAUUUCAAUCAGCUUGUGCAGUAUAAAGAAACGGCCUUCUACAAAGAUGCCUGUACAUACUGCAAAUACUUCGACGACUAUGUGAGCCGCUAAACCGAUACGGCACGAUACAGGCCAGGCGGAUACCGUUACUGUAUCGUGCCGUCGAUAAGGCCAGUGCCGGAAAGCAUACGGUUAUUCGUUGCGGGGGUGGACGGCCUUAUGUGUCGCCACGGCCUGUCCCGCCUGAAUUCAUCCUUCCUUGCGAACUUGCUCUUCCGAUACUAUACUCAGGGCGAUAGAUGAGCUCAAGACAGACAAUAUUACCUAUGAGUCCACUCUUUGAACAAGUCUUAUAAUUUUAAUUCCGCAGAGAAAGUAAAUGAGCCUCUCCUCUGGAUACAUUAUUACAAUCGGGACAAUUAGAUACCAAUACGGACUAUAUUAUAGAUU .(((((.(((((((...............((((...(((...(((.......)))..)))...))))...((((...(((.(((............)))))).(((((((((((((((((...(((((...(((.((((.((((.....(((((((.....))))))))))))))))))...))))).....((((((.(((((((((...(((.((((.....)))).(((((((.(((((((((((....)))))......((((((....))).)))......((((((((......(((((..(((....))).))).))..))))))))........))).))).))))))).......)))..((((((((((((((....(((((...))))).))))))))))))))..(((((((.((((.(((((((((...(((...((((..((((.(.((((((((....(((....))))))).))))).))))...............))))))))))).))))).)))).......(..(((.(((((..((((((..............)).))))..)).))))))..)..)))))))........)))).)))))))))))...))))))).....((....))..........))))))))))...))))......))))...))).))))) (-198.67) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1016 318 271 154 107 tfor:TF1891|5end_hypothetical_protein_2043389..2043619_POSITIVE 926 529 481 148 100 tfor:TF1893|5end_hypothetical_protein_2046267..2046497_POSITIVE 502 248 207 107 61 tfor:TF1067|5end_conserved_hypothetical_protein_1136867..1137097_POSITIVE 487 253 216 197 164 tfor:TF1767|5end_3-dehydroquinate_synthase_1905492..1905722_POSITIVE 467 320 271 67 18 tfor:TF2647|5end_transcriptional_regulator,_possible_arylsulfatase_regulator_2816796..2817026_POSITIVE 444 220 171 68 17 tfor:TF2914|5end_hypothetical_protein_3109345..3109575_POSITIVE 440 319 271 49 1 tfor:TF1775|5end_oxidoreductase,_Gfo/Idh/MocA_family_1913135..1913365_POSITIVE 434 240 191 156 106 tfor:TF2252|5end_transfer_region-related_protein,_TraF_2424621..2424851_POSITIVE 428 345 305 229 194 tfor:TF2214|5end_peptidyl-prolyl_cis-trans_isomerase_2386897..2387127_POSITIVE 426 330 287 44 7 tfor:TF3022|5end_chorismate_synthase_3246136..3246366_POSITIVE 425 320 271 61 4 tfor:TF2832|5end_possible_proton/sodium:glutamate_symporter_protein_3022660..3022890_POSITIVE 423 248 207 72 36 tfor:TF1935|5end_ATP-dependent_RNA_helicase,_DEAD/DEAH-related_helicase_2082002..2082232_POSITIVE 422 279 237 119 77 tfor:TF0328|5end_conserved_hypothetical_protein_354182..354412_POSITIVE 421 360 311 214 158 tfor:TF2775|5end_conserved_hypothetical_protein;_possible_mucoidy_inhibitor-related_protein_2959668..2959898_POSITIVE 419 253 211 213 169 tfor:TF0001|5end_hypothetical_protein_-116..114_POSITIVE 417 240 193 159 100 tfor:TF2207|5end_exo-alpha-sialidase_(neuraminidase)_2380907..2381137_POSITIVE 417 250 201 212 151 tfor:TF2044|5end_excinuclease_ABC,_subunit_A_2203228..2203458_POSITIVE 414 314 271 231 182 tfor:TF2848|5end_cobalamin_biosynthesis_protein_3036368..3036598_POSITIVE 410 337 291 128 88 tfor:TF2159|5end_conserved_hypothetical_protein_2334446..2334676_POSITIVE 409 248 207 72 14 tfor:TF0994|5end_maltose_O-acetyltransferase_1049127..1049357_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 926 529 481 141 93 tfor:TF1892|3end_hypothetical_protein_2046340..2046490_POSITIVE 434 240 191 142 92 tfor:TF2251|3end_conjugative_transposon_protein,_TraE_2424687..2424837_POSITIVE 419 253 211 49 5 tfor:TF3165|3end_thiol:disulfide_interchange_protein,_thioredoxin_family_protein_3405343..3405493_POSITIVE 402 290 243 141 95 tfor:TF2950|3end_chloromuconate_cycloisomerase_3158549..3158699_POSITIVE 402 319 271 58 8 tfor:TF2703|3end_conserved_hypothetical_protein_2876317..2876467_POSITIVE 402 248 204 118 63 tfor:TF0419|3end_conserved_hypothetical_protein_435794..435944_POSITIVE 402 248 203 149 92 tfor:TF0087|3end_ABC_transporter,_permease_component_94368..94518_POSITIVE 401 329 282 146 85 tfor:TF0948|3end_50S_ribosomal_protein_L34_993918..994068_POSITIVE 396 348 304 70 14 tfor:TF2344|3end_ATP/GTP_binding_protein_2508434..2508584_POSITIVE 392 220 172 65 11 tfor:TF0657|3end_conserved_hypothetical_protein_703881..704031_POSITIVE 390 360 312 102 55 tfor:TF0982|3end_conserved_hypothetical_protein_1039474..1039624_POSITIVE 389 280 235 149 100 tfor:TF1443|3end_hypothetical_protein_1528203..1528353_POSITIVE 387 349 304 50 1 tfor:TF0524|3end_possible_cation_efflux_pump_(multidrug_resistance_protein)_549332..549482_POSITIVE 386 339 291 150 99 tfor:TF3099|3end_conserved_hypothetical_protein_3331107..3331257_POSITIVE 386 220 173 112 51 tfor:TF1918|3end_hypothetical_protein_2070105..2070255_POSITIVE 385 238 191 62 15 tfor:TF2053|3end_glycosyltransferase_2218381..2218531_POSITIVE 382 489 441 149 103 tfor:TF2946|3end_conserved_hypothetical_protein;_possible_ATPase_3153362..3153512_POSITIVE 379 338 291 58 13 tfor:TF2428|3end_conserved_hypothetical_protein_2610525..2610675_POSITIVE 377 238 191 136 84 tfor:TF3087|3end_conserved_hypothetical_protein_3322582..3322732_POSITIVE 377 338 291 136 71 tfor:TF2336|3end_conserved_hypothetical_protein_2498159..2498309_POSITIVE