Origin IGS: tatcttatttttttatgtgacaaagattactacgaccaatatttatttcatagtcagacggcgatgggcaaaaccactgatagacataactattacatataagtaaaatgcaatattatattatagagtatagcttccgccatcagacgaatgcaccgcatttgattgctgtgggccgcttgcagtatttacgccactactacttccagcacaataacaaccaatacaagcacatgaggatccccctcttaacaaatccaaccttcgttggtctaattcactcatgctgatttgattcagcctaattttttttcaaatttctcattgttgtaaaatttaagtaaatacagggaacaaaaatagttgccctaacatccttctccaaaatattaatccacttttctaacgaacggtagcatttttcctaataaacggtatatttacccttgactgctgttttaattaacacaaacacaagctgcctttatccggaataaagttacgtcgtaaacctctttacaagagaatggatattattacgtgagttcgggataaaaattgacctgcacacatgcctcacgcaactgacccttgaaataggatgacttggacagaaactcattcataaacaaagtgctatccgacatactcttgtacttttgtcatacatgtcttctccgttatggagcaacaggaacccggttccacccaaaaacaccgaggtaccgcatgcggttatttccgttgaatcgtttatttttgcatccggaatttaaatacaagaataaag .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ctttattcttgtatttaaattccggatgcaaaaataaacgattcaacggaaataaccgcatgcggtacctcggtgtttttgggtggaaccgggttcctgttgctccataacggagaagacatgtatgacaaaagtacaagagtatgtcggatagcactttgtttatgaatgagtttctgtccaagtcatcctatttcaagggtcagttgcgtgaggcatgtgtgcaggtcaatttttatcccgaactcacgtaataatatccattctcttgtaaagaggtttacgacgtaactttattccggataaaggcagcttgtgtttgtgttaattaaaacagcagtcaagggtaaatataccgtttattaggaaaaatgctaccgttcgttagaaaagtggattaatattttggagaaggatgttagggcaactatttttgttccctgtatttacttaaattttacaacaatgagaaatttgaaaaaaaattaggctgaatcaaatcagcatgagtgaattagaccaacgaaggttggatttgttaagagggggatcctcatgtgcttgtattggttgttattgtgctggaagtagtagtggcgtaaatactgcaagcggcccacagcaatcaaatgcggtgcattcgtctgatggcggaagctatactctataatataatattgcattttacttatatgtaatagttatgtctatcagtggttttgcccatcgccgtctgactatgaaataaatattggtcgtagtaatctttgtcacataaaaaaataagata Mask Tandem Repeat Region ================================================ tatcttatttttttatgtgacaaagattactacgaccaatatttatttcatagtcagacggcgatgggcaaaaccactgatagacataactattacatataagtaaaatgcaatattatattatagagtatagcttccgccatcagacgaatgcaccgcatttgattgctgtgggccgcttgcagtatttacgccactactacttccagcacaataacaaccaatacaagcacatgaggatccccctcttaacaaatccaaccttcgttggtctaattcactcatgctgatttgattcagcctaattttttttcaaatttctcattgttgtaaaatttaagtaaatacagggaacaaaaatagttgccctaacatccttctccaaaatattaatccacttttctaacgaacggtagcatttttcctaataaacggtatatttacccttgactgctgttttaattaacacaaacacaagctgcctttatccggaataaagttacgtcgtaaacctctttacaagagaatggatattattacgtgagttcgggataaaaattgacctgcacacatgcctcacgcaactgacccttgaaataggatgacttggacagaaactcattcataaacaaagtgctatccgacatactcttgtacttttgtcatacatgtcttctccgttatggagcaacaggaacccggttccacccaaaaacaccgaggtaccgcatgcggttatttccgttgaatcgtttatttttgcatccggaatttaaatacaagaataaag Find is-nt database================================================ Query_seq: TF1884:TF1885|TF1884:TF1885:conserved hypothetical protein:conserved hypothetical protein:->->:2036657..2037446 790 tatcttatttttttatgtgacaaagattactacgaccaatatttatttcatagtcagacggcgatgggcaaaaccactgatagacataactattacatataagtaaaatgcaatattatattatagagtatagcttccgccatcagacgaatgcaccgcatttgattgctgtgggccgcttgcagtatttacgccactactacttccagcacaataacaaccaatacaagcacatgaggatccccctcttaacaaatccaaccttcgttggtctaattcactcatgctgatttgattcagcctaattttttttcaaatttctcattgttgtaaaatttaagtaaatacagggaacaaaaatagttgccctaacatccttctccaaaatattaatccacttttctaacgaacggtagcatttttcctaataaacggtatatttacccttgactgctgttttaattaacacaaacacaagctgcctttatccggaataaagttacgtcgtaaacctctttacaagagaatggatattattacgtgagttcgggataaaaattgacctgcacacatgcctcacgcaactgacccttgaaataggatgacttggacagaaactcattcataaacaaagtgctatccgacatactcttgtacttttgtcatacatgtcttctccgttatggagcaacaggaacccggttccacccaaaaacaccgaggtaccgcatgcggttatttccgttgaatcgtttatttttgcatccggaatttaaatacaagaataaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1884:TF1885|TF1884:TF1885:conserved hypothetical protein:conserved hypothetical protein:->->:2036657..2037446 790 tatcttatttttttatgtgacaaagattactacgaccaatatttatttcatagtcagacggcgatgggcaaaaccactgatagacataactattacatataagtaaaatgcaatattatattatagagtatagcttccgccatcagacgaatgcaccgcatttgattgctgtgggccgcttgcagtatttacgccactactacttccagcacaataacaaccaatacaagcacatgaggatccccctcttaacaaatccaaccttcgttggtctaattcactcatgctgatttgattcagcctaattttttttcaaatttctcattgttgtaaaatttaagtaaatacagggaacaaaaatagttgccctaacatccttctccaaaatattaatccacttttctaacgaacggtagcatttttcctaataaacggtatatttacccttgactgctgttttaattaacacaaacacaagctgcctttatccggaataaagttacgtcgtaaacctctttacaagagaatggatattattacgtgagttcgggataaaaattgacctgcacacatgcctcacgcaactgacccttgaaataggatgacttggacagaaactcattcataaacaaagtgctatccgacatactcttgtacttttgtcatacatgtcttctccgttatggagcaacaggaacccggttccacccaaaaacaccgaggtaccgcatgcggttatttccgttgaatcgtttatttttgcatccggaatttaaatacaagaataaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1884:TF1885|TF1884:TF1885:conserved hypothetical protein:conserved hypothetical protein:->->:2036657..2037446 790 tatcttatttttttatgtgacaaagattactacgaccaatatttatttcatagtcagacggcgatgggcaaaaccactgatagacataactattacatataagtaaaatgcaatattatattatagagtatagcttccgccatcagacgaatgcaccgcatttgattgctgtgggccgcttgcagtatttacgccactactacttccagcacaataacaaccaatacaagcacatgaggatccccctcttaacaaatccaaccttcgttggtctaattcactcatgctgatttgattcagcctaattttttttcaaatttctcattgttgtaaaatttaagtaaatacagggaacaaaaatagttgccctaacatccttctccaaaatattaatccacttttctaacgaacggtagcatttttcctaataaacggtatatttacccttgactgctgttttaattaacacaaacacaagctgcctttatccggaataaagttacgtcgtaaacctctttacaagagaatggatattattacgtgagttcgggataaaaattgacctgcacacatgcctcacgcaactgacccttgaaataggatgacttggacagaaactcattcataaacaaagtgctatccgacatactcttgtacttttgtcatacatgtcttctccgttatggagcaacaggaacccggttccacccaaaaacaccgaggtaccgcatgcggttatttccgttgaatcgtttatttttgcatccggaatttaaatacaagaataaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tatcttatttttttatgtgacaaagattactacgaccaatatttatttcatagtcagacggcgatgggcaaaaccactgatagacataactattacatataagtaaaatgcaatattatattatagagtatagcttccgccatcagacgaatgcaccgcatttgattgctgtgggccgcttgcagtatttacgccactactacttccagcacaataacaaccaatacaagcacatgaggatccccctcttaacaaatccaaccttcgttggtctaattcactcatgctgatttgattcagcctaattttttttcaaatttctcattgttgtaaaatttaagtaaatacagggaacaaaaatagttgccctaacatccttctccaaaatattaatccacttttctaacgaacggtagcatttttcctaataaacggtatatttacccttgactgctgttttaattaacacaaacacaagctgcctttatccggaataaagttacgtcgtaaacctctttacaagagaatggatattattacgtgagttcgggataaaaattgacctgcacacatgcctcacgcaactgacccttgaaataggatgacttggacagaaactcattcataaacaaagtgctatccgacatactcttgtacttttgtcatacatgtcttctccgttatggagcaacaggaacccggttccacccaaaaacaccgaggtaccgcatgcggttatttccgttgaatcgtttatttttgcatccggaatttaaatacaagaataaag Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 7 End: 99 ...... M F L C D K D Y Y D Q Y L F H S Q T A M G K T T D R H N Y Y I ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 2 End: 103 . M L F F Y V T K I T T T N I Y F I V R R R W A K P L I D I T I T Y K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 99 End: 287 .................................................................................................. M S K M Q Y Y I I E Y S F R H Q T N A P H L I A V G R L Q Y L R H Y Y F Q H N N N Q Y K H M R I P L L T N P T F V G L I ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 51 Strand: + Start: 621 End: 773 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M H K Q S A I R H T L V L L S Y M S S P L W S N R N P V P P K N T E V P H A V I S V E S F I F A S G I ................. Protein_Len: 60 Strand: + Start: 607 End: 789 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M D R N S F I N K V L S D I L L Y F C H T C L L R Y G A T G T R F H P K T P R Y R M R L F P L N R L F L H P E F K Y K N . Protein_Len: 33 Strand: - Start: 684 End: 782 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P A V P V R N W G F V G L Y R M R N N G N F R K N K C G S N L Y M ........ Protein_Len: 49 Strand: - Start: 626 End: 772 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L C L A I R C V R T S K D Y M D E G N H L L L F G T G G L F V S T G C A T I E T S D N I K A D P M .................. Protein_Len: 36 Strand: - Start: 540 End: 647 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... T L E P Y F N V Q V C A E R L Q G K F Y S S K S L F E N M F L T S D S M ............................................................................................................................................... Protein_Len: 40 Strand: - Start: 503 End: 622 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... T T F R K V L S H I N N R S N P I F I S R C V H R V C S V R S I P H S P C F S M ........................................................................................................................................................................ Protein_Len: 30 Strand: - Start: 305 End: 394 ................................................................................................................................................................................................................................................................................................................ N K K L N R M T T F N L Y I C P V F I T A R V D K E L I N M ............................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 124 End: 306 ........................................................................................................................... T Y S G G D S S H V A N S Q Q P G S A T N V G S S S G A C Y C G I C A C S S G G R L L D L R R Q D L E S M S I Q N L R M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: - Start: 96 End: 188 ............................................................................................... M Y T F H L I I N Y L I A E A M L R I C R M Q N S H A A Q L M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 8 End: 109 ....... K K I H C L N S R G I N I E Y D S P S P C F W Q Y V Y S N C I L L M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tatcttatttttttatgtgacaaagattactacgaccaatatttatttcatagtcagacggcgatgggcaaaaccactgatagacataactattacatataagtaaaatgcaatattatattatagagtatagcttccgccatcagacgaatgcaccgcatttgattgctgtgggccgcttgcagtatttacgccactactacttccagcacaataacaaccaatacaagcacatgaggatccccctcttaacaaatccaaccttcgttggtctaattcactcatgctgatttgattcagcctaattttttttcaaatttctcattgttgtaaaatttaagtaaatacagggaacaaaaatagttgccctaacatccttctccaaaatattaatccacttttctaacgaacggtagcatttttcctaataaacggtatatttacccttgactgctgttttaattaacacaaacacaagctgcctttatccggaataaagttacgtcgtaaacctctttacaagagaatggatattattacgtgagttcgggataaaaattgacctgcacacatgcctcacgcaactgacccttgaaataggatgacttggacagaaactcattcataaacaaagtgctatccgacatactcttgtacttttgtcatacatgtcttctccgttatggagcaacaggaacccggttccacccaaaaacaccgaggtaccgcatgcggttatttccgttgaatcgtttatttttgcatccggaatttaaatacaagaataaag Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 80 End: 109 ...............................................................................ATAGACATAACTATTACATATAAGTAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 248 End: 277 .......................................................................................................................................................................................................................................................CTTAACAAATCCAACCTTCGTTGGTCTAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tatcttatttttttatgtgacaaagattactacgaccaatatttatttcatagtcagacggcgatgggcaaaaccactgatagacataactattacatataagtaaaatgcaatattatattatagagtatagcttccgccatcagacgaatgcaccgcatttgattgctgtgggccgcttgcagtatttacgccactactacttccagcacaataacaaccaatacaagcacatgaggatccccctcttaacaaatccaaccttcgttggtctaattcactcatgctgatttgattcagcctaattttttttcaaatttctcattgttgtaaaatttaagtaaatacagggaacaaaaatagttgccctaacatccttctccaaaatattaatccacttttctaacgaacggtagcatttttcctaataaacggtatatttacccttgactgctgttttaattaacacaaacacaagctgcctttatccggaataaagttacgtcgtaaacctctttacaagagaatggatattattacgtgagttcgggataaaaattgacctgcacacatgcctcacgcaactgacccttgaaataggatgacttggacagaaactcattcataaacaaagtgctatccgacatactcttgtacttttgtcatacatgtcttctccgttatggagcaacaggaacccggttccacccaaaaacaccgaggtaccgcatgcggttatttccgttgaatcgtttatttttgcatccggaatttaaatacaagaataaag Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TF1884:TF1885|TF1884:TF1885:conserved hypothetical protein:conserved hypothetical protein:->->:2036657..2037446 790 tatcttatttttttatgtgacaaagattactacgaccaatatttatttcatagtcagacggcgatgggcaaaaccactgatagacataactattacatataagtaaaatgcaatattatattatagagtatagcttccgccatcagacgaatgcaccgcatttgattgctgtgggccgcttgcagtatttacgccactactacttccagcacaataacaaccaatacaagcacatgaggatccccctcttaacaaatccaaccttcgttggtctaattcactcatgctgatttgattcagcctaattttttttcaaatttctcattgttgtaaaatttaagtaaatacagggaacaaaaatagttgccctaacatccttctccaaaatattaatccacttttctaacgaacggtagcatttttcctaataaacggtatatttacccttgactgctgttttaattaacacaaacacaagctgcctttatccggaataaagttacgtcgtaaacctctttacaagagaatggatattattacgtgagttcgggataaaaattgacctgcacacatgcctcacgcaactgacccttgaaataggatgacttggacagaaactcattcataaacaaagtgctatccgacatactcttgtacttttgtcatacatgtcttctccgttatggagcaacaggaacccggttccacccaaaaacaccgaggtaccgcatgcggttatttccgttgaatcgtttatttttgcatccggaatttaaatacaagaataaag Intra-Species Hit: Count: 1 Min: 15 Max: 790 Len: 776 Subject: tfor_TF1884_TF1885|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2036657,2037446]|790 HSP 1 e-value: 0.0 bit: 1491.0 Len: 776 Query Start:15 Query End:790 Subject Strand: POSITIVE Subject Start: 15 Subject End: 790 ..............atgtgacaaagattactacgaccaatatttatttcatagtcagacggcgatgggcaaaaccactgatagacataactattacatataagtaaaatgcaatattatattatagagtatagcttccgccatcagacgaatgcaccgcatttgattgctgtgggccgcttgcagtatttacgccactactacttccagcacaataacaaccaatacaagcacatgaggatccccctcttaacaaatccaaccttcgttggtctaattcactcatgctgatttgattcagcctaannnnnnnncaaatttctcattgttgtaaaatttaagtaaatacagggaacaaaaatagttgccctaacatccttctccaaaatattaatccacttttctaacgaacggtagcatttttcctaataaacggtatatttacccttgactgctgttttaattaacacaaacacaagctgcctttatccggaataaagttacgtcgtaaacctctttacaagagaatggatattattacgtgagttcgggataaaaattgacctgcacacatgcctcacgcaactgacccttgaaataggatgacttggacagaaactcattcataaacaaagtgctatccgacatactcttgtacttttgtcatacatgtcttctccgttatggagcaacaggaacccggttccacccaaaaacaccgaggtaccgcatgcggttatttccgttgaatcgtttatttttgcatccggaatttaaatacaagaataaag ..............atgtgacaaagattactacgaccaatatttatttcatagtcagacggcgatgggcaaaaccactgatagacataactattacatataagtaaaatgcaatattatattatagagtatagcttccgccatcagacgaatgcaccgcatttgattgctgtgggccgcttgcagtatttacgccactactacttccagcacaataacaaccaatacaagcacatgaggatccccctcttaacaaatccaaccttcgttggtctaattcactcatgctgatttgattcagcctaattttttttcaaatttctcattgttgtaaaatttaagtaaatacagggaacaaaaatagttgccctaacatccttctccaaaatattaatccacttttctaacgaacggtagcatttttcctaataaacggtatatttacccttgactgctgttttaattaacacaaacacaagctgcctttatccggaataaagttacgtcgtaaacctctttacaagagaatggatattattacgtgagttcgggataaaaattgacctgcacacatgcctcacgcaactgacccttgaaataggatgacttggacagaaactcattcataaacaaagtgctatccgacatactcttgtacttttgtcatacatgtcttctccgttatggagcaacaggaacccggttccacccaaaaacaccgaggtaccgcatgcggttatttccgttgaatcgtttatttttgcatccggaatttaaatacaagaataaag Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUGUGACAAAGAUUACUACGACCAAUAUUUAUUUCAUAGUCAGACGGCGAUGGGCAAAACCACUGAUAGACAUAACUAUUACAUAUAAGUAAAAUGCAAUAUUAUAUUAUAGAGUAUAGCUUCCGCCAUCAGACGAAUGCACCGCAUUUGAUUGCUGUGGGCCGCUUGCAGUAUUUACGCCACUACUACUUCCAGCACAAUAACAACCAAUACAAGCACAUGAGGAUCCCCCUCUUAACAAAUCCAACCUUCGUUGGUCUAAUUCACUCAUGCUGAUUUGAUUCAGCCUAAUUUUUUUUCAAAUUUCUCAUUGUUGUAAAAUUUAAGUAAAUACAGGGAACAAAAAUAGUUGCCCUAACAUCCUUCUCCAAAAUAUUAAUCCACUUUUCUAACGAACGGUAGCAUUUUUCCUAAUAAACGGUAUAUUUACCCUUGACUGCUGUUUUAAUUAACACAAACACAAGCUGCCUUUAUCCGGAAUAAAGUUACGUCGUAAACCUCUUUACAAGAGAAUGGAUAUUAUUACGUGAGUUCGGGAUAAAAAUUGACCUGCACACAUGCCUCACGCAACUGACCCUUGAAAUAGGAUGACUUGGACAGAAACUCAUUCAUAAACAAAGUGCUAUCCGACAUACUCUUGUACUUUUGUCAUACAUGUCUUCUCCGUUAUGGAGCAACAGGAACCCGGUUCCACCCAAAAACACCGAGGUACCGCAUGCGGUUAUUUCCGUUGAAUCGUUUAUUUUUGCAUCCGGAAUUUAAAUACAAGAAUAAAG ..(((.(((((((....(((((((.....(((((((..(((((...(((.((((((.......((((((......)))))).............((((.............((((...((((..(((..(((.(((((((...)))))))....)))..))).(((.(.((((.............)))).).))).................))))....((((.....)))).........(((((....)))))........))))..(((((......))))).((((((((.(((......(((((.((.((((...............(((((((.......))).))))...(((((((((...(((.(((.(((....(((....))).((((((................((((....))))......((.((((......)))))).......)))))).......))).))).))).....(((((....)))))..))))).)))).)))).)))))))....))).))))))))...))))....)))).)))))..)))))...)))))))(((.(((...(((.(((.....)))......(((((((................))))))).)))......)))...)))....)))..((((.(((((...))))).............(((((((((....))).)))))).))))..))))..))))))))))......................... (-164.31) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUUAUUCUUGUAUUUAAAUUCCGGAUGCAAAAAUAAACGAUUCAACGGAAAUAACCGCAUGCGGUACCUCGGUGUUUUUGGGUGGAACCGGGUUCCUGUUGCUCCAUAACGGAGAAGACAUGUAUGACAAAAGUACAAGAGUAUGUCGGAUAGCACUUUGUUUAUGAAUGAGUUUCUGUCCAAGUCAUCCUAUUUCAAGGGUCAGUUGCGUGAGGCAUGUGUGCAGGUCAAUUUUUAUCCCGAACUCACGUAAUAAUAUCCAUUCUCUUGUAAAGAGGUUUACGACGUAACUUUAUUCCGGAUAAAGGCAGCUUGUGUUUGUGUUAAUUAAAACAGCAGUCAAGGGUAAAUAUACCGUUUAUUAGGAAAAAUGCUACCGUUCGUUAGAAAAGUGGAUUAAUAUUUUGGAGAAGGAUGUUAGGGCAACUAUUUUUGUUCCCUGUAUUUACUUAAAUUUUACAACAAUGAGAAAUUUGAAAAAAAAUUAGGCUGAAUCAAAUCAGCAUGAGUGAAUUAGACCAACGAAGGUUGGAUUUGUUAAGAGGGGGAUCCUCAUGUGCUUGUAUUGGUUGUUAUUGUGCUGGAAGUAGUAGUGGCGUAAAUACUGCAAGCGGCCCACAGCAAUCAAAUGCGGUGCAUUCGUCUGAUGGCGGAAGCUAUACUCUAUAAUAUAAUAUUGCAUUUUACUUAUAUGUAAUAGUUAUGUCUAUCAGUGGUUUUGCCCAUCGCCGUCUGACUAUGAAAUAAAUAUUGGUCGUAGUAAUCUUUGUCACAU .((((((.((((((((.......)))))))).)))))).(((....((((....((((....))))....(((((....((((..((((((......((((.((((.....))))..)))).(((.(((.....((((((((.(((..((((((.((((...........))))..)))))).....(((((......)))))..(((((((((((((....))).((............))...))))))))))......))).)))))))).....))))))((((((((....((((.(((((.(((.(((.((....((....))....))))).)))...((((....))))..))))).)))).....((((..(((....)))..))))....(((((.(((((..((((((..((((..........(((((((..(((((((((..................(((((......)))))..(((((......))))).)))))))))....(((((....)))))...........)))))))........(((((((.((..(((((((((((.....))).))))))))....)).))))))).))))...(((......)))...)))))).....(((((....))))).))))).)))))..((((((((.........))))))))))))))))......))))))..)))).)))))))))(((((((............))))))).......))).... (-205.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 565 422 381 199 158 tfor:TF1097|5end_hypothetical_protein_1165568..1165798_POSITIVE 565 422 381 160 119 tfor:TF1093|5end_hypothetical_protein_1162552..1162782_POSITIVE 376 729 686 53 7 tfor:TF2951|5end_O-succinylbenzoic_acid--CoA_ligase_3158496..3158726_POSITIVE 375 165 122 179 133 tfor:TF2434|5end_conserved_hypothetical_protein_2613969..2614199_POSITIVE 371 180 131 211 173 tfor:TF2693|5end_possible_aminotransferase_2868435..2868665_POSITIVE 369 169 121 167 113 tfor:TF0463|5end_precorrin-6Y_C5,15-methyltransferase_479015..479245_POSITIVE 368 709 664 206 154 tfor:TF2590|5end_transposase_2756056..2756286_POSITIVE 368 170 121 133 75 tfor:TF0600|5end_oxidoreductase/dehydrogenase_630083..630313_POSITIVE 365 697 656 127 79 tfor:TF0639|5end_hypothetical_protein_677877..678107_POSITIVE 364 170 124 231 184 tfor:TF2466|5end_pyruvate_kinase_2644385..2644615_POSITIVE 362 710 663 73 19 tfor:TF2250|5end_transfer_region-related_protein,_TraD_2423380..2423610_POSITIVE 362 740 691 71 12 tfor:TF0304|5end_peptidyl-prolyl_cis-trans_isomerase_329567..329797_POSITIVE 359 169 122 218 152 tfor:TF0520|5end_tetraacyldisaccharide_4'-kinase_544752..544982_POSITIVE 358 182 142 163 121 tfor:TF1507|5end_outer_membrane_receptor,_TonB-dependent_1614536..1614766_POSITIVE 357 169 124 45 5 tfor:TF0307|5end_conserved_hypothetical_protein_332783..333013_POSITIVE 357 170 123 85 28 tfor:TF0139|5end_4-diphosphocytidyl-2c-methyl-D-erythritol_synthase_(MEP_cytidylyltransferase)_(MCT)_147527..147757_POSITIVE 356 169 121 194 129 tfor:TF1446|5end_hypothetical_protein_1530649..1530879_POSITIVE 349 180 131 70 16 tfor:TF2187|5end_conserved_hypothetical_protein_2361693..2361923_POSITIVE 347 170 121 116 50 tfor:TF2477|5end_phosphatase_2654229..2654459_POSITIVE 346 710 661 230 176 tfor:TF2596|5end_conserved_hypothetical_protein;_possible_lipoprotein_2766667..2766897_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 498 422 387 36 1 tfor:TF1076|3end_possible_glycerol_kinase_1145681..1145831_POSITIVE 377 164 121 53 9 tfor:TF2911|3end_hypothetical_protein_3106640..3106790_POSITIVE 368 170 121 100 42 tfor:TF0599|3end_hypothetical_protein_630130..630280_POSITIVE 354 165 123 42 7 tfor:TF1908|3end_possible_phosphoglycerate_mutase_2063299..2063449_POSITIVE 340 170 124 59 3 tfor:TF1683|3end_conserved_hypothetical_protein_1796511..1796661_POSITIVE 340 170 129 48 10 tfor:TF0388|3end_conserved_hypothetical_protein;_possible_integral_membrane_protein_408846..408996_POSITIVE 335 168 123 52 18 tfor:TF2042|3end_sugar_phosphate_isomerase,_polysialic_acid_capsule_expression_protein_2202356..2202506_POSITIVE 333 165 125 150 95 tfor:TF0990|3end_hypothetical_protein_1046662..1046812_POSITIVE 331 170 124 62 16 tfor:TF0995|3end_conserved_hypothetical_protein_1050962..1051112_POSITIVE 330 730 681 134 98 tfor:TF2406|3end_anti-sigma_factor_2581659..2581809_POSITIVE 330 170 121 69 13 tfor:TF2171|3end_hypothetical_protein_2345792..2345942_POSITIVE 329 738 704 35 4 tfor:TF2950|3end_chloromuconate_cycloisomerase_3158549..3158699_POSITIVE 329 169 123 147 91 tfor:TF0405|3end_conserved_hypothetical_protein_424308..424458_POSITIVE 325 195 151 129 82 tfor:TF2344|3end_ATP/GTP_binding_protein_2508434..2508584_POSITIVE 324 169 121 91 38 tfor:TF0145|3end_glutamine_synthetase_154718..154868_POSITIVE 323 690 651 127 83 tfor:TF2261|3end_transfer_region-related_protein,_TraM_2431922..2432072_POSITIVE 322 719 674 111 63 tfor:TF2152|3end_uronate_isomerase_2328061..2328211_POSITIVE 319 714 671 68 20 tfor:TF2656|3end_valyl-tRNA_synthetase_2829822..2829972_POSITIVE 318 180 131 61 7 tfor:TF3080|3end_conserved_hypothetical_protein_3314423..3314573_POSITIVE 318 180 131 61 7 tfor:TF1458|3end_conserved_hypothetical_protein_1548381..1548531_POSITIVE