Origin IGS: gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaaattaatttgtaggggcgaaccttgtgttcgcccgtcataacgccgacatatacatcccccatcccccccttccaagggggaagagcgaagcgaagggggatgttaccccttccaagggggaatttgcagggctgactgctggcaactgaataaagcattggggacgagaaaaacctcaaacactctttgacttattgacacacgacggaaagggaaaatacgtcttacgcttggacgattgatggaaaagttgtaagtttgcactgaaacaagagaaaagtaatcaggaggcaagaga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tctcttgcctcctgattacttttctcttgtttcagtgcaaacttacaacttttccatcaatcgtccaagcgtaagacgtattttccctttccgtcgtgtgtcaataagtcaaagagtgtttgaggtttttctcgtccccaatgctttattcagttgccagcagtcagccctgcaaattcccccttggaaggggtaacatcccccttcgcttcgctcttcccccttggaagggggggatgggggatgtatatgtcggcgttatgacgggcgaacacaaggttcgcccctacaaattaatttgtcaatggttattttctaaatacatgattcggcgtgtaccacgcataaccattaaccattaaccattgacaattaaccattaatttgtcattcagagcactcttttctgttacttttggcttgacccaaaagtaaccaaaaggtcaaggcttc Mask Tandem Repeat Region ================================================ gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaaattaatttgtaggggcgaaccttgtgttcgcccgtcataacgccgacatatacatcccccatcccccccttccaagggggaagagcgaagcgaagggggatgttaccccttccaagggggaatttgcagggctgactgctggcaactgaataaagcattggggacgagaaaaacctcaaacactctttgacttattgacacacgacggaaagggaaaatacgtcttacgcttggacgattgatggaaaagttgtaagtttgcactgaaacaagagaaaagtaatcaggaggcaagaga Find is-nt database================================================ Query_seq: TF1846:TF1847|TF1846:TF1847:hypothetical protein:hypothetical protein:->->:1997076..1997528 453 gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaaattaatttgtaggggcgaaccttgtgttcgcccgtcataacgccgacatatacatcccccatcccccccttccaagggggaagagcgaagcgaagggggatgttaccccttccaagggggaatttgcagggctgactgctggcaactgaataaagcattggggacgagaaaaacctcaaacactctttgacttattgacacacgacggaaagggaaaatacgtcttacgcttggacgattgatggaaaagttgtaagtttgcactgaaacaagagaaaagtaatcaggaggcaagaga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1846:TF1847|TF1846:TF1847:hypothetical protein:hypothetical protein:->->:1997076..1997528 453 gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaaattaatttgtaggggcgaaccttgtgttcgcccgtcataacgccgacatatacatcccccatcccccccttccaagggggaagagcgaagcgaagggggatgttaccccttccaagggggaatttgcagggctgactgctggcaactgaataaagcattggggacgagaaaaacctcaaacactctttgacttattgacacacgacggaaagggaaaatacgtcttacgcttggacgattgatggaaaagttgtaagtttgcactgaaacaagagaaaagtaatcaggaggcaagaga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1846:TF1847|TF1846:TF1847:hypothetical protein:hypothetical protein:->->:1997076..1997528 453 gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaaattaatttgtaggggcgaaccttgtgttcgcccgtcataacgccgacatatacatcccccatcccccccttccaagggggaagagcgaagcgaagggggatgttaccccttccaagggggaatttgcagggctgactgctggcaactgaataaagcattggggacgagaaaaacctcaaacactctttgacttattgacacacgacggaaagggaaaatacgtcttacgcttggacgattgatggaaaagttgtaagtttgcactgaaacaagagaaaagtaatcaggaggcaagaga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaaattaatttgtaggggcgaaccttgtgttcgcccgtcataacgccgacatatacatcccccatcccccccttccaagggggaagagcgaagcgaagggggatgttaccccttccaagggggaatttgcagggctgactgctggcaactgaataaagcattggggacgagaaaaacctcaaacactctttgacttattgacacacgacggaaagggaaaatacgtcttacgcttggacgattgatggaaaagttgtaagtttgcactgaaacaagagaaaagtaatcaggaggcaagaga Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 177 End: 287 ................................................................................................................................................................................ M C S P V I T P T Y T S P I P P F Q G G R A K R R G M L P L P R G N L Q G ...................................................................................................................................................................... Protein_Len: 41 Strand: + Start: 179 End: 301 .................................................................................................................................................................................. M F A R H N A D I Y I P H P P L P R G K S E A K G D V T P S K G E F A G L T A G N ........................................................................................................................................................ Protein_Len: 46 Strand: + Start: 205 End: 342 ............................................................................................................................................................................................................ M H P P S P P S K G E E R S E G G C Y P F Q G G I C R A D C W Q L N K A L G T R K T S N T L ............................................................................................................... Protein_Len: 30 Strand: + Start: 305 End: 394 ................................................................................................................................................................................................................................................................................................................ M K H W G R E K P Q T L F D L L T H D G K G K Y V L R L D D ........................................................... Protein_Len: 60 Strand: - Start: 261 End: 449 .................................................................................................................................................................................................................................................................... P P I Q L A S Q Q C S F L A N P V L F V E F V R Q S I S V R R F P F I R R V S P R N I S F N Y T Q V S V L S F Y D P P M .... Protein_Len: 38 Strand: - Start: 193 End: 306 ................................................................................................................................................................................................ L A S M Y M G W G G R G L P F L S A F P S T V G E L P S N A P S V A P L Q M ................................................................................................................................................... Protein_Len: 31 Strand: - Start: 138 End: 230 ......................................................................................................................................... F I V M S L N I Q L P S G Q T R G D Y R R C I C G G D G G E M ............................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 95 End: 334 .............................................................................................. I L K Y P R V K H E G T M V G V Y V D G M G G K W P P L A F R L P I N G R G L P F K C P Q S S A V S Y L M P S S F F R M ....................................................................................................................... gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaaattaatttgtaggggcgaaccttgtgttcgcccgtcataacgccgacatatacatcccccatcccccccttccaagggggaagagcgaagcgaagggggatgttaccccttccaagggggaatttgcagggctgactgctggcaactgaataaagcattggggacgagaaaaacctcaaacactctttgacttattgacacacgacggaaagggaaaatacgtcttacgcttggacgattgatggaaaagttgtaagtttgcactgaaacaagagaaaagtaatcaggaggcaagaga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaaattaatttgtaggggcgaaccttgtgttcgcccgtcataacgccgacatatacatcccccatcccccccttccaagggggaagagcgaagcgaagggggatgttaccccttccaagggggaatttgcagggctgactgctggcaactgaataaagcattggggacgagaaaaacctcaaacactctttgacttattgacacacgacggaaagggaaaatacgtcttacgcttggacgattgatggaaaagttgtaagtttgcactgaaacaagagaaaagtaatcaggaggcaagaga Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 55 HP_score: -4.6 Tail_Score: -3.61988 Start: 161 End: 194 Full_Region: tgtatatgtcggcgt tatgacgggcgaac acaag gttcgcccctacaaa ttaatttgtcaatgg ................................................................................................................................................................tatgacgggcgaacacaaggttcgcccctacaaa................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 41 HP_score: -2.9 Tail_Score: -2.76696 Start: 331 End: 345 Full_Region: GGGACGAGAAAAACC TCAAA CACTC TTTGA CTTATTGACACACGA ..........................................................................................................................................................................................................................................................................................................................................TCAAACACTCTTTGA............................................................................................................ TransTerm Strand: - Conf: 41 HP_score: -2.9 Tail_Score: -2.72028 Start: 331 End: 345 Full_Region: tcgtgtgtcaataag tcaaa gagtg tttga ggtttttctcgtccc ..........................................................................................................................................................................................................................................................................................................................................tcaaagagtgtttga............................................................................................................ Find igs database================================================ Query_seq: TF1846:TF1847|TF1846:TF1847:hypothetical protein:hypothetical protein:->->:1997076..1997528 453 gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaaattaatttgtaggggcgaaccttgtgttcgcccgtcataacgccgacatatacatcccccatcccccccttccaagggggaagagcgaagcgaagggggatgttaccccttccaagggggaatttgcagggctgactgctggcaactgaataaagcattggggacgagaaaaacctcaaacactctttgacttattgacacacgacggaaagggaaaatacgtcttacgcttggacgattgatggaaaagttgtaagtttgcactgaaacaagagaaaagtaatcaggaggcaagaga Intra-Species Hit: Count: 12 Min: 1 Max: 453 Len: 453 Subject: tfor_TF1846_TF1847|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1997076,1997528]|453 HSP 1 e-value: 1.0E-126 bit: 454.0 Len: 229 Query Start:225 Query End:453 Subject Strand: POSITIVE Subject Start: 225 Subject End: 453 ................................................................................................................................................................................................................................ttccaagggggaagagcgaagcgaagggggatgttaccccttccaagggggaatttgcagggctgactgctggcaactgaataaagcattggggacgagaaaaacctcaaacactctttgacttattgacacacgacggaaagggaaaatacgtcttacgcttggacgattgatggaaaagttgtaagtttgcactgaaacaagagaaaagtaatcaggaggcaagaga ................................................................................................................................................................................................................................ttccaagggggaagagcgaagcgaagggggatgttaccccttccaagggggaatttgcagggctgactgctggcaactgaataaagcattggggacgagaaaaacctcaaacactctttgacttattgacacacgacggaaagggaaaatacgtcttacgcttggacgattgatggaaaagttgtaagtttgcactgaaacaagagaaaagtaatcaggaggcaagaga HSP 2 e-value: 1.0E-115 bit: 416.0 Len: 210 Query Start:1 Query End:210 Subject Strand: POSITIVE Subject Start: 1 Subject End: 210 gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaaattaatttgtaggggcgaaccttgtgttcgcccgtcataacgccgacatatacat................................................................................................................................................................................................................................................... gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaaattaatttgtaggggcgaaccttgtgttcgcccgtcataacgccgacatatacat................................................................................................................................................................................................................................................... Subject: tfor_TF2996_TF2997|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3211182,3211547]|366 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 131 Query Start:1 Query End:131 Subject Strand: NEGATIVE Subject Start: 218 Subject End: 340 gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatg.................................................................................................................................................................................................................................................................................................................................. gaagccttgacctttgggttacttttgggtcaagccaaaagtaacag-aaagagtgctctgaatgacaaattaattgttaattgtc-------aatggttaattgttatgcgtggtacacgccgaatcatg.................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 56 Query Start:78 Query End:133 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 214 .............................................................................ttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgta................................................................................................................................................................................................................................................................................................................................ .............................................................................ttaattgttaattgtcaattgtcaatggttatgcgtggtacacgccgaatcatgta................................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF2922_TF2923|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[3121599,3122307]|709 HSP 1 e-value: 9.0E-26 bit: 119.0 Len: 64 Query Start:92 Query End:155 Subject Strand: NEGATIVE Subject Start: 356 Subject End: 419 ...........................................................................................ttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaa.......................................................................................................................................................................................................................................................................................................... ...........................................................................................ttaatggttaattgttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaa.......................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 9.0E-23 bit: 109.0 Len: 71 Query Start:1 Query End:71 Subject Strand: NEGATIVE Subject Start: 131 Subject End: 200 gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaat.............................................................................................................................................................................................................................................................................................................................................................................................. gaagccttgaccttttggttacttttgggtcaagccaaaagtaac-ggaaagagcgctctgaatgacaaat.............................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 3.0E-13 bit: 77.8 Len: 43 Query Start:59 Query End:101 Subject Strand: NEGATIVE Subject Start: 554 Subject End: 596 ..........................................................ctgaatgacaaattaatggttaattgtcaatggttaatggtta................................................................................................................................................................................................................................................................................................................................................................ ..........................................................ctgaatgacaaattaatggttaattgtcaatggttaattgtta................................................................................................................................................................................................................................................................................................................................................................ HSP 4 e-value: 7.0E-8 bit: 60.0 Len: 30 Query Start:56 Query End:85 Subject Strand: NEGATIVE Subject Start: 405 Subject End: 434 .......................................................gctctgaatgacaaattaatggttaattgt................................................................................................................................................................................................................................................................................................................................................................................ .......................................................gctctgaatgacaaattaatggttaattgt................................................................................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF1838_TF1839|tRNA/rRNA methyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1988806,1989486]|681 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 100 Query Start:56 Query End:155 Subject Strand: POSITIVE Subject Start: 167 Subject End: 259 .......................................................gctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaa.......................................................................................................................................................................................................................................................................................................... .......................................................gctctgaatgacaaattaattgttaattgtcaatggttaattgtta-------tgccgggtacacgccgaatcatgtatttagaaaataaccattgacaa.......................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 51 Query Start:1 Query End:51 Subject Strand: POSITIVE Subject Start: 385 Subject End: 436 gaagccttgaccttttggttactttt-gggtcaagccaaaagtaacagaaaa.................................................................................................................................................................................................................................................................................................................................................................................................................. gaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaa.................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2920_TF2921|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3117231,3118637]|1407 HSP 1 e-value: 9.0E-23 bit: 109.0 Len: 71 Query Start:1 Query End:71 Subject Strand: NEGATIVE Subject Start: 187 Subject End: 256 gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagagtgctctgaatgacaaat.............................................................................................................................................................................................................................................................................................................................................................................................. gaagccttgacctttgggttacttttgggtcaagccaaaagtaacag-aaagagcgctctgaatgacaaat.............................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 7.0E-8 bit: 60.0 Len: 34 Query Start:56 Query End:89 Subject Strand: NEGATIVE Subject Start: 391 Subject End: 424 .......................................................gctctgaatgacaaattaatggttaattgtcaat............................................................................................................................................................................................................................................................................................................................................................................ .......................................................gctctgaatgacaaattaatggttaattgacaat............................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 4.0E-6 bit: 54.0 Len: 49 Query Start:229 Query End:277 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 155 ....................................................................................................................................................................................................................................aagggggaagagcgaa-gcgaagggggatgtta-ccccttccaagggggaa................................................................................................................................................................................ ....................................................................................................................................................................................................................................aagggggaagagcgaaagcgaagggggatgttatccccctcaaagggggaa................................................................................................................................................................................ Subject: tfor_TF1187_TF1188|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1269933,1270295]|363 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 66 Query Start:87 Query End:152 Subject Strand: POSITIVE Subject Start: 111 Subject End: 176 ......................................................................................aatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattga............................................................................................................................................................................................................................................................................................................. ......................................................................................aatggttaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattga............................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 8.0E-20 bit: 99.6 Len: 54 Query Start:1 Query End:54 Subject Strand: POSITIVE Subject Start: 27 Subject End: 80 gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagag............................................................................................................................................................................................................................................................................................................................................................................................................... gaagccttgaccttttggttacttttgggtcaagccaaaagtaacggaaaagag............................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 4.0E-6 bit: 54.0 Len: 27 Query Start:56 Query End:82 Subject Strand: POSITIVE Subject Start: 94 Subject End: 120 .......................................................gctctgaatgacaaattaatggttaat................................................................................................................................................................................................................................................................................................................................................................................... .......................................................gctctgaatgacaaattaatggttaat................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 66 Query Start:56 Query End:121 Subject Strand: NEGATIVE Subject Start: 126 Subject End: 191 .......................................................gctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacg............................................................................................................................................................................................................................................................................................................................................ .......................................................gctctgaatgacaaattaatggttaattgtcaattgttaattgtcaattgttatgcgtgatacacg............................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-12 bit: 75.8 Len: 54 Query Start:1 Query End:54 Subject Strand: NEGATIVE Subject Start: 204 Subject End: 257 gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaaaagag............................................................................................................................................................................................................................................................................................................................................................................................................... gaagccttgacctttgggttactttttggtcaagccaaaagtgacaaaaaagag............................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 4.0E-6 bit: 54.0 Len: 39 Query Start:56 Query End:94 Subject Strand: NEGATIVE Subject Start: 530 Subject End: 568 .......................................................gctctgaatgacaaattaatggttaattgtcaatggtta....................................................................................................................................................................................................................................................................................................................................................................... .......................................................gctctgaatgacaaattaatggtcaattgttaattgtta....................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2500_TF2501|ABC transporter, ATP-binding protein:DNA mismatch repair protein|POSITIVE:POSITIVE|[2675363,2676419]|1057 HSP 1 e-value: 8.0E-17 bit: 89.7 Len: 49 Query Start:1 Query End:49 Subject Strand: POSITIVE Subject Start: 670 Subject End: 718 gaagccttgaccttttggttacttttgggtcaagccaaaagtaacagaa.................................................................................................................................................................................................................................................................................................................................................................................................................... gaagccttgaccttttggttacttttgggtcaagccaaaagtgacagaa.................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-12 bit: 73.8 Len: 45 Query Start:231 Query End:275 Subject Strand: POSITIVE Subject Start: 832 Subject End: 876 ......................................................................................................................................................................................................................................gggggaagagcgaagcgaagggggatgttaccccttccaaggggg.................................................................................................................................................................................. ......................................................................................................................................................................................................................................gggggaagagcgaagcgaagggggatgttatcccttcaaaggggg.................................................................................................................................................................................. HSP 3 e-value: 7.0E-8 bit: 60.0 Len: 34 Query Start:56 Query End:89 Subject Strand: POSITIVE Subject Start: 736 Subject End: 769 .......................................................gctctgaatgacaaattaatggttaattgtcaat............................................................................................................................................................................................................................................................................................................................................................................ .......................................................gctctgaatgacatattaatggttaattgtcaat............................................................................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF0821_TF0822|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[880256,880626]|371 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 47 Query Start:231 Query End:277 Subject Strand: POSITIVE Subject Start: 22 Subject End: 68 ......................................................................................................................................................................................................................................gggggaagagcgaagcgaagggggatgttaccccttccaagggggaa................................................................................................................................................................................ ......................................................................................................................................................................................................................................gggggaagagcgaagcgaagggggatgttaccccttcaaagggggaa................................................................................................................................................................................ HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 40 Query Start:94 Query End:133 Subject Strand: POSITIVE Subject Start: 300 Subject End: 339 .............................................................................................aatggttaatggttatgcgtggtacacgccgaatcatgta................................................................................................................................................................................................................................................................................................................................ .............................................................................................aatggtcaatggttatgcgtggtacacgccgaatcatgta................................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF2817_TF2818|hypothetical protein:acetylornithine aminotransferase|POSITIVE:POSITIVE|[3007687,3007878]|192 HSP 1 e-value: 5.0E-15 bit: 83.8 Len: 46 Query Start:56 Query End:101 Subject Strand: POSITIVE Subject Start: 25 Subject End: 70 .......................................................gctctgaatgacaaattaatggttaattgtcaatggttaatggtta................................................................................................................................................................................................................................................................................................................................................................ .......................................................gctctgaatgacaaattaatggttaattgtcaatggttaattgtta................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-13 bit: 77.8 Len: 66 Query Start:231 Query End:296 Subject Strand: POSITIVE Subject Start: 122 Subject End: 188 ......................................................................................................................................................................................................................................gggggaagagcgaagcgaagggggatgttaccccttccaa-gggggaatttgcagggctgactgctg............................................................................................................................................................. ......................................................................................................................................................................................................................................gggggaagagcggagcgaagagggatgttatcccttcaaaggggggaatttgcagggctgaccgctg............................................................................................................................................................. Subject: tfor_TF1483_TF1484|glycosyltransferase family protein:penicillin binding protein|POSITIVE:POSITIVE|[1578886,1579698]|813 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 46 Query Start:56 Query End:101 Subject Strand: POSITIVE Subject Start: 285 Subject End: 330 .......................................................gctctgaatgacaaattaatggttaattgtcaatggttaatggtta................................................................................................................................................................................................................................................................................................................................................................ .......................................................gctctgaatgacaaattaatggttaattgtcaattgttaattgtta................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 7.0E-8 bit: 60.0 Len: 45 Query Start:231 Query End:275 Subject Strand: POSITIVE Subject Start: 92 Subject End: 137 ......................................................................................................................................................................................................................................gggggaagagcgaagcgaa-gggggatgttaccccttccaaggggg.................................................................................................................................................................................. ......................................................................................................................................................................................................................................gggggaagagcgaagcgaaggggggatgttatcccttcaaaggggg.................................................................................................................................................................................. HSP 3 e-value: 7.0E-8 bit: 60.0 Len: 34 Query Start:100 Query End:133 Subject Strand: NEGATIVE Subject Start: 537 Subject End: 570 ...................................................................................................taatggttatgcgtggtacacgccgaatcatgta................................................................................................................................................................................................................................................................................................................................ ...................................................................................................taatggttatgcgtgttacacgccgaatcatgta................................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF1578_TF1579|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1686477,1687028]|552 HSP 1 e-value: 7.0E-11 bit: 69.9 Len: 43 Query Start:87 Query End:129 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 43 ......................................................................................aatggttaatggttaatggttatgcgtggtacacgccgaatca.................................................................................................................................................................................................................................................................................................................................... ......................................................................................aatggttaattgttaattgttatgcgtggtacacgccgaatca.................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-10 bit: 67.9 Len: 45 Query Start:231 Query End:275 Subject Strand: NEGATIVE Subject Start: 311 Subject End: 356 ......................................................................................................................................................................................................................................gggggaagagcgaagcgaag-ggggatgttaccccttccaaggggg.................................................................................................................................................................................. ......................................................................................................................................................................................................................................gggggaagagcgaagcgaaggggggatgttaccccttcaaaggggg.................................................................................................................................................................................. HSP 3 e-value: 5.0E-9 bit: 63.9 Len: 44 Query Start:78 Query End:121 Subject Strand: NEGATIVE Subject Start: 402 Subject End: 445 .............................................................................ttaattgtcaatggttaatggttaatggttatgcgtggtacacg............................................................................................................................................................................................................................................................................................................................................ .............................................................................ttaattgttaatggttaattgttaattgttatgcgtggtacacg............................................................................................................................................................................................................................................................................................................................................ HSP 4 e-value: 2.0E-8 bit: 61.9 Len: 39 Query Start:56 Query End:94 Subject Strand: NEGATIVE Subject Start: 22 Subject End: 60 .......................................................gctctgaatgacaaattaatggttaattgtcaatggtta....................................................................................................................................................................................................................................................................................................................................................................... .......................................................gctctgaatgacaaattaatggttaattgttaattgtta....................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAAGCCUUGACCUUUUGGUUACUUUUGGGUCAAGCCAAAAGUAACAGAAAAGAGUGCUCUGAAUGACAAAUUAAUGGUUAAUUGUCAAUGGUUAAUGGUUAAUGGUUAUGCGUGGUACACGCCGAAUCAUGUAUUUAGAAAAUAACCAUUGACAAAUUAAUUUGUAGGGGCGAACCUUGUGUUCGCCCGUCAUAACGCCGACAUAUACAUCCCCCAUCCCCCCCUUCCAAGGGGGAAGAGCGAAGCGAAGGGGGAUGUUACCCCUUCCAAGGGGGAAUUUGCAGGGCUGACUGCUGGCAACUGAAUAAAGCAUUGGGGACGAGAAAAACCUCAAACACUCUUUGACUUAUUGACACACGACGGAAAGGGAAAAUACGUCUUACGCUUGGACGAUUGAUGGAAAAGUUGUAAGUUUGCACUGAAACAAGAGAAAAGUAAUCAGGAGGCAAGAGA .....((((.((((((((((((((((..(((((.((((..(((.....(((((((((((..(...((((((((((......(((((((((((((.(((...((((((..(((((...)))))..))))))....))).....)))))))))))))))))))))))..((((((((.....))))))))........(((..........((((((....((((((....)))))).........(.(((((((.......))))))))..))))))....((((......)))).)))..............)..)))..(((......)))...))))))))...............((((.............)))).)))..))))....)))))......(((...(((....)))..))).....))))))))))))))))))))... (-153.12) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCUCUUGCCUCCUGAUUACUUUUCUCUUGUUUCAGUGCAAACUUACAACUUUUCCAUCAAUCGUCCAAGCGUAAGACGUAUUUUCCCUUUCCGUCGUGUGUCAAUAAGUCAAAGAGUGUUUGAGGUUUUUCUCGUCCCCAAUGCUUUAUUCAGUUGCCAGCAGUCAGCCCUGCAAAUUCCCCCUUGGAAGGGGUAACAUCCCCCUUCGCUUCGCUCUUCCCCCUUGGAAGGGGGGGAUGGGGGAUGUAUAUGUCGGCGUUAUGACGGGCGAACACAAGGUUCGCCCCUACAAAUUAAUUUGUCAAUGGUUAUUUUCUAAAUACAUGAUUCGGCGUGUACCACGCAUAACCAUUAACCAUUAACCAUUGACAAUUAACCAUUAAUUUGUCAUUCAGAGCACUCUUUUCUGUUACUUUUGGCUUGACCCAAAAGUAACCAAAAGGUCAAGGCUUC ......((((..((((..(((((..........(((((........................(((..(((((..((((((....(((((((((...................(((((((((((((....))))).....))))))))............((((......))))...........)))))))))..(((((((((....((((.(((((((.....)))))))))))..))))))))).)))))).)))))..)))((((((((.....))))))))..(((((((((((((((((((((((...((.........))....(((((...)))))...............)))))))))))))......))))))))))........))))).......(((((((((((......))))))))))).)))))))))))))... (-139.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 860 260 211 59 8 tfor:TF1167|5end_hypothetical_protein_1248559..1248789_POSITIVE 803 50 1 167 118 tfor:TF2997|5end_hypothetical_protein_3211408..3211638_POSITIVE 803 50 1 141 92 tfor:TF2996|5end_hypothetical_protein_3210802..3211032_POSITIVE 802 230 181 135 86 tfor:TF2172|5end_hypothetical_protein_2345822..2346052_POSITIVE 802 230 181 129 80 tfor:TF2173|5end_hypothetical_protein_2345816..2346046_POSITIVE 802 230 181 129 80 tfor:TF2171|5end_hypothetical_protein_2345485..2345715_POSITIVE 802 230 181 129 80 tfor:TF2166|5end_hypothetical_protein_2342115..2342345_POSITIVE 796 50 1 80 31 tfor:TF0685|5end_hypothetical_protein_730852..731082_POSITIVE 782 230 181 129 80 tfor:TF0346|5end_hypothetical_protein_367048..367278_POSITIVE 780 50 1 167 118 tfor:TF1578|5end_hypothetical_protein_1686187..1686417_POSITIVE 780 50 1 151 102 tfor:TF1168|5end_hypothetical_protein_1248755..1248985_POSITIVE 780 50 1 100 51 tfor:TF0469|5end_hypothetical_protein_486960..487190_POSITIVE 780 50 1 69 20 tfor:TF0468|5end_hypothetical_protein_486929..487159_POSITIVE 773 140 91 161 112 tfor:TF2667|5end_hypothetical_protein_2842395..2842625_POSITIVE 773 140 91 82 33 tfor:TF2664|5end_hypothetical_protein_2841399..2841629_POSITIVE 761 278 231 49 1 tfor:TF2350|5end_hypothetical_protein_2515063..2515293_POSITIVE 758 255 212 51 1 tfor:TF2640|5end_hypothetical_protein_2809106..2809336_POSITIVE 751 160 111 101 53 tfor:TF2670|5end_hypothetical_protein_2842779..2843009_POSITIVE 751 160 111 101 53 tfor:TF2666|5end_hypothetical_protein_2841818..2842048_POSITIVE 736 140 91 173 117 tfor:TF0470|5end_hypothetical_protein_487253..487483_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 803 50 1 108 59 tfor:TF2994|3end_hypothetical_protein_3210849..3210999_POSITIVE 780 50 1 134 85 tfor:TF1577|3end_hypothetical_protein_1686234..1686384_POSITIVE 778 210 163 122 74 tfor:TF1168|3end_hypothetical_protein_1249092..1249242_POSITIVE 762 150 105 52 7 tfor:TF2921|3end_hypothetical_protein_3118790..3118940_POSITIVE 762 150 105 111 66 tfor:TF1578|3end_hypothetical_protein_1686416..1686566_POSITIVE 761 50 3 48 1 tfor:TF2639|3end_hypothetical_protein_2809333..2809483_POSITIVE 750 60 13 88 41 tfor:TF2914|3end_hypothetical_protein_3109643..3109793_POSITIVE 749 140 91 136 87 tfor:TF2997|3end_hypothetical_protein_3211664..3211814_POSITIVE 736 278 231 57 9 tfor:TF0685|3end_hypothetical_protein_731132..731282_POSITIVE 736 140 91 68 12 tfor:TF0469|3end_hypothetical_protein_487228..487378_POSITIVE 733 267 221 74 24 tfor:TF0470|3end_hypothetical_protein_487518..487668_POSITIVE 721 290 241 51 2 tfor:TF1166|3end_ABC_transporter,_permease_component_1248603..1248753_POSITIVE 689 150 101 111 62 tfor:TF3003|3end_hypothetical_protein_3220629..3220779_POSITIVE 689 50 1 127 78 tfor:TF2667|3end_hypothetical_protein_2842705..2842855_POSITIVE 689 50 1 127 78 tfor:TF2665|3end_hypothetical_protein_2842235..2842385_POSITIVE 689 50 1 127 78 tfor:TF2664|3end_hypothetical_protein_2841730..2841880_POSITIVE 668 160 113 47 1 tfor:TF2438|3end_hypothetical_protein_2616157..2616307_POSITIVE 657 258 218 44 3 tfor:TF1590|3end_hypothetical_protein_1706043..1706193_POSITIVE 650 150 105 55 10 tfor:TF2025|3end_hypothetical_protein_2182180..2182330_POSITIVE 640 160 113 47 1 tfor:TF0468|3end_hypothetical_protein_487188..487338_POSITIVE