Origin IGS: taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttaaccattgacaattgacaattacttttgtcattcagagcgtaagcgaagaatctctttcctcttcctcgcgagattcctcactgcgttcggaatgacaaagggggcatccaaatccatatttattcaggctttcagccctccgccgagggggtcgcccttttttcccaacgcttcgctttgctgcacattgggctgaattaatacgccctttcagggctgtttttcaattgttatgcgtggtacacgccaaatcatgtatccggcataaccattaaccattgacaattaacaattactttgtcattcagagcgtaagcgaagaatctctttcctcttcctcgcgagattcctcactgcgttcggaatgacagaggcggtta Mask Tandem Repeat Region ================================================ taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa Find is-nt database================================================ Query_seq: TF1841:TF1842|TF1841:TF1842:hypothetical protein:hypothetical protein:->->:1992328..1992710 383 taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1841:TF1842|TF1841:TF1842:hypothetical protein:hypothetical protein:->->:1992328..1992710 383 taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1841:TF1842|TF1841:TF1842:hypothetical protein:hypothetical protein:->->:1992328..1992710 383 taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 34 End: 126 ................................. M S R G R G K R F F A Y A L N D K V I V N C Q W L M V M P D T ................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 167 End: 346 ...................................................................................................................................................................... M K G R I N S A Q C A A K R S V G K K G R P P R R R A E S L N K Y G F G C P L C H S E R S E E S R E E E E R D S S L T L ..................................... Protein_Len: 31 Strand: + Start: 258 End: 350 ................................................................................................................................................................................................................................................................. M N M D L D A P F V I P N A V R N L A R K R K E I L R L R S E ................................. Protein_Len: 60 Strand: - Start: 188 End: 376 ........................................................................................................................................................................................... C C L S A N P F F P S G R P P P S F A Q I F I S K S A G K T M G F A T L F R A L F L F S I R R K R E S H C F Y N D I T M ....... Protein_Len: 42 Strand: - Start: 183 End: 308 ...................................................................................................................................................................................... N L G I H L L A F R Q S F L A V G E A S P Q F G S Y I H I Q I G G K D N R V C H P M ........................................................................... taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 78 HP_score: -5.4 Tail_Score: -4.82333 Start: 162 End: 177 Full_Region: tgggctgaattaata cgccct ttc agggctg tttttcaattgttat .................................................................................................................................................................cgccctttcagggctg.............................................................................................................................................................................................................. TransTerm Strand: - Conf: 77 HP_score: -9.1 Tail_Score: -4.01369 Start: 164 End: 176 Full_Region: gggctgaattaatac gccct ttc agggc tgtttttcaattgtt ...................................................................................................................................................................gccctttcagggc............................................................................................................................................................................................................... Find igs database================================================ Query_seq: TF1841:TF1842|TF1841:TF1842:hypothetical protein:hypothetical protein:->->:1992328..1992710 383 taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa Intra-Species Hit: Count: 33 Min: 1 Max: 383 Len: 383 Subject: tfor_TF1841_TF1842|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1992328,1992710]|383 HSP 1 e-value: 0.0 bit: 759.0 Len: 383 Query Start:1 Query End:383 Subject Strand: POSITIVE Subject Start: 1 Subject End: 383 taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa Subject: tfor_TF2920_TF2921|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3117231,3118637]|1407 HSP 1 e-value: 3.0E-68 bit: 260.0 Len: 198 Query Start:160 Query End:357 Subject Strand: NEGATIVE Subject Start: 410 Subject End: 607 ...............................................................................................................................................................aacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgcc-ccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa.......................... ...............................................................................................................................................................aacagccctgaaagggcgcgttaattcagtccaatgtgcagcgaagcgaagcgttgggaaaca-gggcgaccccctcggcggagggctgaaagcctgaatgaataatgatttggatgctgccctttgtcattccgaacgcagtgaggaatcccgtgggaaagaggaaagagattcttcgcttacgctctgaatgacaaa.......................... HSP 2 e-value: 2.0E-63 bit: 244.0 Len: 197 Query Start:163 Query End:359 Subject Strand: NEGATIVE Subject Start: 727 Subject End: 927 ..................................................................................................................................................................agccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaa---gggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgcc-ccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaag........................ ..................................................................................................................................................................agccctgaaagggcgtattaattcagcccaatgcgcagcgaagcgaagcgttggaaaaaaaacagggcaaccccctcagcggagggctgaaagcctgaatgaataatgatttggatgctgccctttgtcattccgaacgcagtgaggaatctcacgggggaaagggaagagattcttcgcttacgctctgaatgacaaaag........................ HSP 3 e-value: 8.0E-29 bit: 129.0 Len: 93 Query Start:11 Query End:103 Subject Strand: NEGATIVE Subject Start: 391 Subject End: 483 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaat........................................................................................................................................................................................................................................................................................ ..........tgtcattccgaacgcagtgaggaatcccgtgggaaagaggaaagagattcttcgcttacgctctgaatgacaaattaatggttaattgacaat........................................................................................................................................................................................................................................................................................ HSP 4 e-value: 3.0E-22 bit: 107.0 Len: 74 Query Start:11 Query End:84 Subject Strand: NEGATIVE Subject Start: 729 Subject End: 802 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... ..........tgtcattccgaacgcagtgaggaatctcacgggggaaagggaagagattcttcgcttacgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0467_TF0468|acetyltransferase-related protein:hypothetical protein|POSITIVE:POSITIVE|[486604,487068]|465 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 123 Query Start:148 Query End:270 Subject Strand: NEGATIVE Subject Start: 268 Subject End: 389 ...................................................................................................................................................taacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatt................................................................................................................. ...................................................................................................................................................taacaattggaaaacagccctgaaagggcgtaataattcagcccaatgcgtagcgaagcgaagcgttggg-aaacagggcaaccccctcggcggagggctgaaagcctgaatgaatatggatt................................................................................................................. HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 69 Query Start:87 Query End:155 Subject Strand: POSITIVE Subject Start: 382 Subject End: 445 ......................................................................................aattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaatt.................................................................................................................................................................................................................................... ......................................................................................aattgttaattgtcaatggttatt-----tgctgggtacatgattcggcgtgtaccacgcataacaatt.................................................................................................................................................................................................................................... Subject: tfor_TF1838_TF1839|tRNA/rRNA methyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1988806,1989486]|681 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 126 Query Start:1 Query End:126 Subject Strand: POSITIVE Subject Start: 98 Subject End: 223 taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggataca................................................................................................................................................................................................................................................................. taaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtaca................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-23 bit: 111.0 Len: 104 Query Start:280 Query End:383 Subject Strand: POSITIVE Subject Start: 104 Subject End: 206 .......................................................................................................................................................................................................................................................................................cctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa .......................................................................................................................................................................................................................................................................................cctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgac-aaattaattgttaattgtcaatggttaa Subject: tfor_TF2823_TF2824|TPR-containing protein:nucleoside-transporting protein nupG|POSITIVE:POSITIVE|[3014398,3014840]|443 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 116 Query Start:11 Query End:126 Subject Strand: POSITIVE Subject Start: 106 Subject End: 220 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggataca................................................................................................................................................................................................................................................................. ..........tgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtaca................................................................................................................................................................................................................................................................. HSP 2 e-value: 3.0E-25 bit: 117.0 Len: 79 Query Start:279 Query End:357 Subject Strand: POSITIVE Subject Start: 101 Subject End: 178 ......................................................................................................................................................................................................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa.......................... ......................................................................................................................................................................................................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaa.......................... Subject: tfor_TF2922_TF2923|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[3121599,3122307]|709 HSP 1 e-value: 5.0E-30 bit: 133.0 Len: 99 Query Start:1 Query End:99 Subject Strand: NEGATIVE Subject Start: 405 Subject End: 503 taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgt............................................................................................................................................................................................................................................................................................ taaccccctttgtcattccgaacgtagtgaggaatcccgtggggaagaggaaagagattcttcgcttacgctctgaatgacaaattaatggttaattgt............................................................................................................................................................................................................................................................................................ HSP 2 e-value: 8.0E-29 bit: 129.0 Len: 81 Query Start:277 Query End:357 Subject Strand: NEGATIVE Subject Start: 420 Subject End: 500 ....................................................................................................................................................................................................................................................................................ccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa.......................... ....................................................................................................................................................................................................................................................................................ccccctttgtcattccgaacgtagtgaggaatcccgtggggaagaggaaagagattcttcgcttacgctctgaatgacaaa.......................... HSP 3 e-value: 2.0E-26 bit: 121.0 Len: 73 Query Start:203 Query End:275 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 74 ..........................................................................................................................................................................................................aagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggat............................................................................................................ ..........................................................................................................................................................................................................aagcgaagcgttggggaaaaagggcgcccccctcggcggagggctgaaagcctgaatgaatatggatttggat............................................................................................................ HSP 4 e-value: 1.0E-15 bit: 85.7 Len: 71 Query Start:51 Query End:121 Subject Strand: NEGATIVE Subject Start: 548 Subject End: 617 ..................................................aaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccgg...................................................................................................................................................................................................................................................................... ..................................................aaagagattcatcgctt-cgcgctgaatgacaaattaatggttaattgtcaatggttaattgttatgccgg...................................................................................................................................................................................................................................................................... HSP 5 e-value: 6.0E-8 bit: 60.0 Len: 34 Query Start:122 Query End:155 Subject Strand: POSITIVE Subject Start: 377 Subject End: 410 .........................................................................................................................atacatgatttggcgtgtaccacgcataacaatt.................................................................................................................................................................................................................................... .........................................................................................................................atacatgattcggcgtgtaccacgcataacaatt.................................................................................................................................................................................................................................... Subject: tfor_TF2438_TF2439|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2616218,2616519]|302 HSP 1 e-value: 5.0E-30 bit: 133.0 Len: 95 Query Start:163 Query End:257 Subject Strand: NEGATIVE Subject Start: 118 Subject End: 211 ..................................................................................................................................................................agccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctga.............................................................................................................................. ..................................................................................................................................................................agccctgaaagggcgcattaattcagcccaatgtgtagcgaagcgaagcgttgggaaaaca-ggcgaccccctcagcggagggctgaaagcctga.............................................................................................................................. HSP 2 e-value: 6.0E-8 bit: 60.0 Len: 34 Query Start:122 Query End:155 Subject Strand: POSITIVE Subject Start: 69 Subject End: 102 .........................................................................................................................atacatgatttggcgtgtaccacgcataacaatt.................................................................................................................................................................................................................................... .........................................................................................................................atacatgattcggcgtgtaccacgcataacaatt.................................................................................................................................................................................................................................... Subject: tfor_TF1588_TF1589|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[1702621,1703328]|708 HSP 1 e-value: 5.0E-30 bit: 133.0 Len: 79 Query Start:281 Query End:359 Subject Strand: NEGATIVE Subject Start: 480 Subject End: 558 ........................................................................................................................................................................................................................................................................................ctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaag........................ ........................................................................................................................................................................................................................................................................................ctttgtcattccgaacgcagtgaggaatctcgtgaggaaaaggaaaaagattcttcgcttacgctctgaatgacaaaag........................ HSP 2 e-value: 5.0E-27 bit: 123.0 Len: 74 Query Start:11 Query End:84 Subject Strand: NEGATIVE Subject Start: 482 Subject End: 555 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... ..........tgtcattccgaacgcagtgaggaatctcgtgaggaaaaggaaaaagattcttcgcttacgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 7.0E-20 bit: 99.6 Len: 125 Query Start:232 Query End:356 Subject Strand: NEGATIVE Subject Start: 199 Subject End: 321 .......................................................................................................................................................................................................................................ccctcggcggagggctgaaagcctgaataaat-atggatttggatgccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaa........................... .......................................................................................................................................................................................................................................ccctcagcggagggctggaagcctgaatgaatgattgatttggatgtccc-tttgtcattccgaacgcagtgaggaatcccgccccgaaaaggaaa-agattcatcgctt-cgctctgaatgacaa........................... HSP 4 e-value: 1.0E-9 bit: 65.9 Len: 73 Query Start:11 Query End:83 Subject Strand: NEGATIVE Subject Start: 199 Subject End: 269 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaa............................................................................................................................................................................................................................................................................................................ ..........tgtcattccgaacgcagtgaggaatcccgccccgaaaaggaaa-agattcatcgctt-cgctctgaatgacaa............................................................................................................................................................................................................................................................................................................ HSP 5 e-value: 2.0E-8 bit: 61.9 Len: 39 Query Start:163 Query End:201 Subject Strand: NEGATIVE Subject Start: 341 Subject End: 379 ..................................................................................................................................................................agccctgaaagggcgtattaattcagcccaatgtgcagc...................................................................................................................................................................................... ..................................................................................................................................................................agccctgaaagggcgtgttaattcagcccaatgcgcagc...................................................................................................................................................................................... Subject: tfor_TF1483_TF1484|glycosyltransferase family protein:penicillin binding protein|POSITIVE:POSITIVE|[1578886,1579698]|813 HSP 1 e-value: 5.0E-30 bit: 133.0 Len: 181 Query Start:203 Query End:383 Subject Strand: POSITIVE Subject Start: 147 Subject End: 324 ..........................................................................................................................................................................................................aagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaatatggatttggatgccccctttgtcattccgaacgcagtgaggaatctcg-cgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa ..........................................................................................................................................................................................................aagcgaagcattgggaaaacaggc--aacccctcagcggagggctgaaagcctgaatgaatatggatttagatgccgtctttgtcattccgaacgtagtgaggaatcccgccccggtaaagggaagagattcttcgctt-cgctctgaatgac-aaattaatggttaattgtcaattgttaa HSP 2 e-value: 7.0E-23 bit: 109.0 Len: 118 Query Start:11 Query End:128 Subject Strand: POSITIVE Subject Start: 226 Subject End: 343 ..........tgtcattccgaacgcagtgaggaatctcgcga-ggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggatacatg............................................................................................................................................................................................................................................................... ..........tgtcattccgaacgtagtgaggaatcccgccccggtaaagggaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgtcaattgttaattgttatgccgggtacatg............................................................................................................................................................................................................................................................... HSP 3 e-value: 4.0E-6 bit: 54.0 Len: 43 Query Start:86 Query End:128 Subject Strand: POSITIVE Subject Start: 3 Subject End: 45 .....................................................................................taattgttaattgtcaatggttaatggttatgccggatacatg............................................................................................................................................................................................................................................................... .....................................................................................taatggttaattgtcaattgttaattgttatgccgggtacatg............................................................................................................................................................................................................................................................... Subject: tfor_TF2921_TF2922|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[3118851,3119261]|411 HSP 1 e-value: 8.0E-29 bit: 129.0 Len: 89 Query Start:11 Query End:99 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 343 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgt............................................................................................................................................................................................................................................................................................ ..........tgtcattccgaacgtagtgaggaatctcacggggaagagggaagagattcttcgcttacgctctgaatgacaaattaatggttaattgt............................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-27 bit: 125.0 Len: 79 Query Start:279 Query End:357 Subject Strand: NEGATIVE Subject Start: 270 Subject End: 348 ......................................................................................................................................................................................................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa.......................... ......................................................................................................................................................................................................................................................................................ccctttgtcattccgaacgtagtgaggaatctcacggggaagagggaagagattcttcgcttacgctctgaatgacaaa.......................... HSP 3 e-value: 1.0E-21 bit: 105.0 Len: 89 Query Start:11 Query End:99 Subject Strand: NEGATIVE Subject Start: 83 Subject End: 170 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgt............................................................................................................................................................................................................................................................................................ ..........tgtcattccgaacgtagtgaggaatcccgtggggaa-aggaaaaagattcttcgcttacgctctgaatgacaaattaatggttaattgt............................................................................................................................................................................................................................................................................................ HSP 4 e-value: 2.0E-20 bit: 101.0 Len: 79 Query Start:279 Query End:357 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 175 ......................................................................................................................................................................................................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa.......................... ......................................................................................................................................................................................................................................................................................ccctttgtcattccgaacgtagtgaggaatcccgtggggaa-aggaaaaagattcttcgcttacgctctgaatgacaaa.......................... HSP 5 e-value: 6.0E-8 bit: 60.0 Len: 34 Query Start:122 Query End:155 Subject Strand: POSITIVE Subject Start: 55 Subject End: 88 .........................................................................................................................atacatgatttggcgtgtaccacgcataacaatt.................................................................................................................................................................................................................................... .........................................................................................................................atacatgattcggcgtgtaccacgcataacaatt.................................................................................................................................................................................................................................... HSP 6 e-value: 2.0E-7 bit: 58.0 Len: 41 Query Start:86 Query End:126 Subject Strand: NEGATIVE Subject Start: 365 Subject End: 405 .....................................................................................taattgttaattgtcaatggttaatggttatgccggataca................................................................................................................................................................................................................................................................. .....................................................................................taatggttaattgtcaattgttaatggttatgccgggtaca................................................................................................................................................................................................................................................................. Subject: tfor_TF1848_TF1850|conserved hypothetical protein:Na+/H+-exchanging protein|POSITIVE:POSITIVE|[1998005,1998681]|677 HSP 1 e-value: 3.0E-28 bit: 127.0 Len: 116 Query Start:11 Query End:126 Subject Strand: POSITIVE Subject Start: 457 Subject End: 572 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggataca................................................................................................................................................................................................................................................................. ..........tgtcattccgaacaccgtgaggaatctcgcaggggaaagggaagagattcttcgctgacgctctgaatgacaaattaatggttaatggtcaatggttaattgttatgccgggtaca................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-18 bit: 95.6 Len: 95 Query Start:163 Query End:257 Subject Strand: POSITIVE Subject Start: 78 Subject End: 170 ..................................................................................................................................................................agccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctga.............................................................................................................................. ..................................................................................................................................................................agccctgaaagggcgcgttaattcagcccaatgtggagcgcagcgaagtgttggg--gaaagagcgaccccctcagcggagggctgaaagcctga.............................................................................................................................. HSP 3 e-value: 2.0E-17 bit: 91.7 Len: 102 Query Start:282 Query End:383 Subject Strand: POSITIVE Subject Start: 455 Subject End: 555 .........................................................................................................................................................................................................................................................................................tttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa .........................................................................................................................................................................................................................................................................................tttgtcattccgaacaccgtgaggaatctcgcaggggaaagggaagagattcttcgctgacgctctgaatgac-aaattaatggttaatggtcaatggttaa HSP 4 e-value: 4.0E-9 bit: 63.9 Len: 40 Query Start:87 Query End:126 Subject Strand: POSITIVE Subject Start: 179 Subject End: 218 ......................................................................................aattgttaattgtcaatggttaatggttatgccggataca................................................................................................................................................................................................................................................................. ......................................................................................aattgttaattgtcaatggttaattgttatgccgggtaca................................................................................................................................................................................................................................................................. Subject: tfor_TF1590_TF1591|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[1706104,1706526]|423 HSP 1 e-value: 3.0E-28 bit: 127.0 Len: 76 Query Start:281 Query End:356 Subject Strand: NEGATIVE Subject Start: 249 Subject End: 324 ........................................................................................................................................................................................................................................................................................ctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaa........................... ........................................................................................................................................................................................................................................................................................ctttgtcattccgaacgcagtgaggaatctcgtgaggaaaaggaaaaagattcttcgcttacgctctgaatgacaa........................... HSP 2 e-value: 2.0E-26 bit: 121.0 Len: 73 Query Start:11 Query End:83 Subject Strand: NEGATIVE Subject Start: 249 Subject End: 321 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaa............................................................................................................................................................................................................................................................................................................ ..........tgtcattccgaacgcagtgaggaatctcgtgaggaaaaggaaaaagattcttcgcttacgctctgaatgacaa............................................................................................................................................................................................................................................................................................................ Subject: tfor_TF2816_TF2817|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3007245,3007497]|253 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 99 Subject End: 204 taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaa-gagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggt..................................................................................................................................................................................................................................................................................... taaccccctttgtcattccgaacacagtgaggaatcccgcgaggaaaaggaaaggagattcttcgctt-tgctctgaatgacaaattaattgttaattgtcaatggt..................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-24 bit: 113.0 Len: 104 Query Start:277 Query End:380 Subject Strand: POSITIVE Subject Start: 102 Subject End: 204 ....................................................................................................................................................................................................................................................................................ccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaa-gagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggt... ....................................................................................................................................................................................................................................................................................ccccctttgtcattccgaacacagtgaggaatcccgcgaggaaaaggaaaggagattcttcgctt-tgctctgaatgac-aaattaattgttaattgtcaatggt... HSP 3 e-value: 9.0E-7 bit: 56.0 Len: 36 Query Start:122 Query End:157 Subject Strand: NEGATIVE Subject Start: 204 Subject End: 239 .........................................................................................................................atacatgatttggcgtgtaccacgcataacaattga.................................................................................................................................................................................................................................. .........................................................................................................................atacatgattcggcgtgtaccacgcataataattga.................................................................................................................................................................................................................................. Subject: tfor_TF1578_TF1579|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1686477,1687028]|552 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 98 Query Start:11 Query End:108 Subject Strand: NEGATIVE Subject Start: 22 Subject End: 120 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaa-gagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggtta................................................................................................................................................................................................................................................................................... ..........tgtcattccgaacgcagtgaggaatctcgcggggtaaaggaaaagagattcttcgcttacgctctgaatgacaaattaatggttaattgttaattgtta................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-24 bit: 113.0 Len: 108 Query Start:11 Query End:118 Subject Strand: NEGATIVE Subject Start: 412 Subject End: 520 ..........tgtcattccgaacgcagtgaggaatctcgcgagg-aagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgc......................................................................................................................................................................................................................................................................... ..........tgtcattccgaacgcagtgaggaatctcgcggggtaaaagaaaagagattcatcgctcacgctctgaatgacatattaattgttaatggttaattgttaattgttatgc......................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-23 bit: 111.0 Len: 75 Query Start:283 Query End:357 Subject Strand: NEGATIVE Subject Start: 46 Subject End: 121 ..........................................................................................................................................................................................................................................................................................ttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaa-gagattcttcgcttacgctctgaatgacaaa.......................... ..........................................................................................................................................................................................................................................................................................ttgtcattccgaacgcagtgaggaatctcgcggggtaaaggaaaagagattcttcgcttacgctctgaatgacaaa.......................... HSP 4 e-value: 2.0E-17 bit: 91.7 Len: 73 Query Start:283 Query End:355 Subject Strand: NEGATIVE Subject Start: 448 Subject End: 521 ..........................................................................................................................................................................................................................................................................................ttgtcattccgaacgcagtgaggaatctcgcgagg-aagaggaaagagattcttcgcttacgctctgaatgaca............................ ..........................................................................................................................................................................................................................................................................................ttgtcattccgaacgcagtgaggaatctcgcggggtaaaagaaaagagattcatcgctcacgctctgaatgaca............................ Subject: tfor_TF2817_TF2818|hypothetical protein:acetylornithine aminotransferase|POSITIVE:POSITIVE|[3007687,3007878]|192 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 78 Query Start:49 Query End:126 Subject Strand: POSITIVE Subject Start: 5 Subject End: 81 ................................................ggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggataca................................................................................................................................................................................................................................................................. ................................................ggaaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgtcaatggttaattgttatgccgggtaca................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 62 Query Start:322 Query End:383 Subject Strand: POSITIVE Subject Start: 5 Subject End: 64 .................................................................................................................................................................................................................................................................................................................................ggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa .................................................................................................................................................................................................................................................................................................................................ggaaagagattcttcgctt-cgctctgaatgac-aaattaatggttaattgtcaatggttaa Subject: tfor_TF0541_TF0542|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[571919,572057]|139 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 81 Query Start:277 Query End:357 Subject Strand: POSITIVE Subject Start: 44 Subject End: 123 ....................................................................................................................................................................................................................................................................................ccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa.......................... ....................................................................................................................................................................................................................................................................................ccccctttgtcattccgaacgtagtgaggaatctcgcgaggaaaaagaaggagattcttcgctt-cgccctgaatgacaaa.......................... HSP 2 e-value: 1.0E-21 bit: 105.0 Len: 89 Query Start:11 Query End:99 Subject Strand: POSITIVE Subject Start: 51 Subject End: 138 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgt............................................................................................................................................................................................................................................................................................ ..........tgtcattccgaacgtagtgaggaatctcgcgaggaaaaagaaggagattcttcgctt-cgccctgaatgacaaattaatggttaattgt............................................................................................................................................................................................................................................................................................ Subject: tfor_TF2500_TF2501|ABC transporter, ATP-binding protein:DNA mismatch repair protein|POSITIVE:POSITIVE|[2675363,2676419]|1057 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 95 Query Start:163 Query End:257 Subject Strand: POSITIVE Subject Start: 212 Subject End: 304 ..................................................................................................................................................................agccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctga.............................................................................................................................. ..................................................................................................................................................................agccctgaaagggcgcattaattcagcccaatgcagagcgaagcgaagcgttgggaaaaca-ggcg-ccccctcggcggagggatgaaagcctga.............................................................................................................................. HSP 2 e-value: 7.0E-17 bit: 89.7 Len: 73 Query Start:54 Query End:126 Subject Strand: POSITIVE Subject Start: 720 Subject End: 792 .....................................................gagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggataca................................................................................................................................................................................................................................................................. .....................................................gagattcttcgcttacgctctgaatgacatattaatggttaattgtcaattgtcaattgttatgccgggtaca................................................................................................................................................................................................................................................................. HSP 3 e-value: 2.0E-7 bit: 58.0 Len: 29 Query Start:327 Query End:355 Subject Strand: POSITIVE Subject Start: 720 Subject End: 748 ......................................................................................................................................................................................................................................................................................................................................gagattcttcgcttacgctctgaatgaca............................ ......................................................................................................................................................................................................................................................................................................................................gagattcttcgcttacgctctgaatgaca............................ Subject: tfor_TF1592_TF1593|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1708618,1708998]|381 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 75 Query Start:281 Query End:355 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 297 ........................................................................................................................................................................................................................................................................................ctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgaca............................ ........................................................................................................................................................................................................................................................................................ctttgtcattccgaacgcagtgaggaatctcgtgaggagaaggaaaaagattcttcgctt-cgctctgaatgaca............................ HSP 2 e-value: 1.0E-18 bit: 95.6 Len: 72 Query Start:11 Query End:82 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 294 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgaca............................................................................................................................................................................................................................................................................................................. ..........tgtcattccgaacgcagtgaggaatctcgtgaggagaaggaaaaagattcttcgctt-cgctctgaatgaca............................................................................................................................................................................................................................................................................................................. Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 7.0E-20 bit: 99.6 Len: 66 Query Start:160 Query End:225 Subject Strand: NEGATIVE Subject Start: 802 Subject End: 867 ...............................................................................................................................................................aacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagg.............................................................................................................................................................. ...............................................................................................................................................................aacagccctgaaagggcgcattaattcagcccaatgtggagcgcagcgaagcgttgggaaaaaagg.............................................................................................................................................................. HSP 2 e-value: 4.0E-15 bit: 83.8 Len: 98 Query Start:11 Query End:108 Subject Strand: NEGATIVE Subject Start: 530 Subject End: 626 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggtta................................................................................................................................................................................................................................................................................... ..........tgtcattccgaacaccgtgaggaatctcgcggggtaaagggaagagattcatcgctt-cgctctgaatgacaaattaatggtcaattgttaattgtta................................................................................................................................................................................................................................................................................... HSP 3 e-value: 6.0E-14 bit: 79.8 Len: 60 Query Start:51 Query End:110 Subject Strand: NEGATIVE Subject Start: 151 Subject End: 209 ..................................................aaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaat................................................................................................................................................................................................................................................................................. ..................................................aaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgtcaattgttaat................................................................................................................................................................................................................................................................................. HSP 4 e-value: 6.0E-14 bit: 79.8 Len: 100 Query Start:283 Query End:382 Subject Strand: NEGATIVE Subject Start: 530 Subject End: 627 ..........................................................................................................................................................................................................................................................................................ttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggtta. ..........................................................................................................................................................................................................................................................................................ttgtcattccgaacaccgtgaggaatctcgcggggtaaagggaagagattcatcgctt-cgctctgaatgac-aaattaatggtcaattgttaattgtta. HSP 5 e-value: 9.0E-7 bit: 56.0 Len: 60 Query Start:324 Query End:383 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 209 ...................................................................................................................................................................................................................................................................................................................................aaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa ...................................................................................................................................................................................................................................................................................................................................aaagagattcttcgctt-cgctctgaatgac-aaattaatggttaattgtcaattgttaa Subject: tfor_TF2840_TF2841|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[3031350,3031580]|231 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 103 Query Start:157 Query End:259 Subject Strand: POSITIVE Subject Start: 3 Subject End: 103 ............................................................................................................................................................aaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaat............................................................................................................................ ............................................................................................................................................................aaaaacagccctgaaagggtgtgttaattcagcccgatgggtagcgaagggaagcgtagggaaaaaagg--taccctctcggcagagggctgaaagcctgaat............................................................................................................................ Subject: tfor_TF0603_TF0604|glycosyltransferase:hypothetical protein|POSITIVE:POSITIVE|[634899,635524]|626 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 99 Query Start:1 Query End:99 Subject Strand: POSITIVE Subject Start: 136 Subject End: 233 taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgt............................................................................................................................................................................................................................................................................................ taaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgctt-cgctctgaatgacaaattaattgttaattgt............................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-14 bit: 81.8 Len: 81 Query Start:277 Query End:357 Subject Strand: POSITIVE Subject Start: 139 Subject End: 218 ....................................................................................................................................................................................................................................................................................ccccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa.......................... ....................................................................................................................................................................................................................................................................................ccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgctt-cgctctgaatgacaaa.......................... Subject: tfor_TF1585_TF1586|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1690671,1691110]|440 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 117 Query Start:148 Query End:264 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 ...................................................................................................................................................taacaattgaaaaacagccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctgaataaata....................................................................................................................... ...................................................................................................................................................taacaattggaaaacagccctgaaagggcgtgttaattcagcccaat-----gcaaag-----cgttgggaaacaa-ggcaaccccctcagcggagggctgaaagcctgaatgaata....................................................................................................................... HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 53 Query Start:105 Query End:157 Subject Strand: POSITIVE Subject Start: 110 Subject End: 164 ........................................................................................................gttaatggttat--gccggatacatgatttggcgtgtaccacgcataacaattga.................................................................................................................................................................................................................................. ........................................................................................................gttaatggttatttgccgggtacatgattcgacgtgtaccacgcataacaattga.................................................................................................................................................................................................................................. Subject: tfor_TF2914_TF2915|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3109704,3110561]|858 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 95 Query Start:163 Query End:257 Subject Strand: NEGATIVE Subject Start: 358 Subject End: 446 ..................................................................................................................................................................agccctgaaagggcgtattaattcagcccaatgtgcagcaaagcgaagcgttgggaaaaaagggcgaccccctcggcggagggctgaaagcctga.............................................................................................................................. ..................................................................................................................................................................agccctgaaagggcacgttaattcagcccaatgtgc-----agcgaagcgttgggaaaaca-ggcacccccctcggcggagggctgaaagcctga.............................................................................................................................. HSP 2 e-value: 2.0E-14 bit: 81.8 Len: 93 Query Start:11 Query End:103 Subject Strand: NEGATIVE Subject Start: 197 Subject End: 288 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaat........................................................................................................................................................................................................................................................................................ ..........tgtcattccgaacaccgtgaggaatctcgcctcgaaaagggaaaagattcttcgctt-cgctctgaatgacaaattaatggttaattgacaat........................................................................................................................................................................................................................................................................................ HSP 3 e-value: 3.0E-13 bit: 77.8 Len: 79 Query Start:279 Query End:357 Subject Strand: NEGATIVE Subject Start: 216 Subject End: 293 ......................................................................................................................................................................................................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa.......................... ......................................................................................................................................................................................................................................................................................ccctttgtcattccgaacaccgtgaggaatctcgcctcgaaaagggaaaagattcttcgctt-cgctctgaatgacaaa.......................... HSP 4 e-value: 2.0E-10 bit: 67.9 Len: 38 Query Start:89 Query End:126 Subject Strand: NEGATIVE Subject Start: 310 Subject End: 347 ........................................................................................ttgttaattgtcaatggttaatggttatgccggataca................................................................................................................................................................................................................................................................. ........................................................................................ttgttaattgtcaatggttaatggttatgccgggtaca................................................................................................................................................................................................................................................................. HSP 5 e-value: 2.0E-7 bit: 58.0 Len: 37 Query Start:277 Query End:313 Subject Strand: NEGATIVE Subject Start: 547 Subject End: 583 ....................................................................................................................................................................................................................................................................................ccccctttgtcattccgaacgcagtgaggaatctcgc...................................................................... ....................................................................................................................................................................................................................................................................................ccccctttgtcattccgaacgaagtaaggaatctcgc...................................................................... Subject: tfor_TF2997_TF2998|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[3211725,3211950]|226 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 89 Query Start:11 Query End:99 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 96 ..........tgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgt............................................................................................................................................................................................................................................................................................ ..........tgtcattccgaacgtagtgaggaatcccgtggggaaaag-aatgagattcttcgctt-cgctctgaatgacaaattaatggttaattgt............................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-12 bit: 75.8 Len: 78 Query Start:280 Query End:357 Subject Strand: NEGATIVE Subject Start: 25 Subject End: 100 .......................................................................................................................................................................................................................................................................................cctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa.......................... .......................................................................................................................................................................................................................................................................................cctttgtcattccgaacgtagtgaggaatcccgtggggaa-aagaatgagattcttcgctt-cgctctgaatgacaaa.......................... Subject: tfor_TF2744_TF2745|methionyl-tRNA formyltransferase:hypothetical protein|POSITIVE:POSITIVE|[2927439,2927701]|263 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 92 Query Start:4 Query End:95 Subject Strand: POSITIVE Subject Start: 172 Subject End: 263 ...ccgcctctgtcattccgaacgcagtgaggaatctcg-cgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaa................................................................................................................................................................................................................................................................................................ ...ccgcctttgtcattccgaacaccgtgaggaatctcgccccggaaaaggagagagattcatcgctt-cgctctgaatgacaaattaatggttaa................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 6.0E-11 bit: 69.9 Len: 78 Query Start:280 Query End:357 Subject Strand: POSITIVE Subject Start: 175 Subject End: 252 .......................................................................................................................................................................................................................................................................................cctttgtcattccgaacgcagtgaggaatctcg-cgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa.......................... .......................................................................................................................................................................................................................................................................................cctttgtcattccgaacaccgtgaggaatctcgccccggaaaaggagagagattcatcgctt-cgctctgaatgacaaa.......................... Subject: tfor_TF1187_TF1188|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1269933,1270295]|363 HSP 1 e-value: 2.0E-10 bit: 67.9 Len: 46 Query Start:51 Query End:96 Subject Strand: POSITIVE Subject Start: 75 Subject End: 120 ..................................................aaagagattcttcgcttacgctctgaatgacaaagtaattgttaat............................................................................................................................................................................................................................................................................................... ..................................................aaagagattcatcgcttacgctctgaatgacaaattaatggttaat............................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-8 bit: 60.0 Len: 34 Query Start:324 Query End:357 Subject Strand: POSITIVE Subject Start: 75 Subject End: 108 ...................................................................................................................................................................................................................................................................................................................................aaagagattcttcgcttacgctctgaatgacaaa.......................... ...................................................................................................................................................................................................................................................................................................................................aaagagattcatcgcttacgctctgaatgacaaa.......................... Subject: tfor_TF0538_TF0540|hypothetical protein:conserved hypothetical protein; possible surface protein|POSITIVE:POSITIVE|[567196,567425]|230 HSP 1 e-value: 1.0E-9 bit: 65.9 Len: 33 Query Start:327 Query End:359 Subject Strand: POSITIVE Subject Start: 62 Subject End: 94 ......................................................................................................................................................................................................................................................................................................................................gagattcttcgcttacgctctgaatgacaaaag........................ ......................................................................................................................................................................................................................................................................................................................................gagattcttcgcttacgctctgaatgacaaaag........................ HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 31 Query Start:54 Query End:84 Subject Strand: POSITIVE Subject Start: 62 Subject End: 92 .....................................................gagattcttcgcttacgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... .....................................................gagattcttcgcttacgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2652_TF2653|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2822183,2822232]|50 HSP 1 e-value: 2.0E-8 bit: 61.9 Len: 47 Query Start:49 Query End:95 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 46 ................................................ggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaa................................................................................................................................................................................................................................................................................................ ................................................ggaaagagattcttcgctt-cgctctgaatgacaaattaatggttaa................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 36 Query Start:322 Query End:357 Subject Strand: NEGATIVE Subject Start: 12 Subject End: 46 .................................................................................................................................................................................................................................................................................................................................ggaaagagattcttcgcttacgctctgaatgacaaa.......................... .................................................................................................................................................................................................................................................................................................................................ggaaagagattcttcgctt-cgctctgaatgacaaa.......................... Subject: tfor_TF1591_TF1592|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[1708327,1708464]|138 HSP 1 e-value: 6.0E-8 bit: 60.0 Len: 78 Query Start:282 Query End:359 Subject Strand: NEGATIVE Subject Start: 54 Subject End: 130 .........................................................................................................................................................................................................................................................................................tttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaag........................ .........................................................................................................................................................................................................................................................................................tttgtcattccgaacaccgtgaggaatctcacttggagaaggaaaaagattcatcgctt-tgctctgaatgacaaaag........................ HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 84 Query Start:1 Query End:84 Subject Strand: NEGATIVE Subject Start: 56 Subject End: 138 taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... taaccgcgtttgtcattccgaacaccgtgaggaatctcacttggagaaggaaaaagattcatcgctt-tgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1589_TF1590|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[1705807,1705950]|144 HSP 1 e-value: 6.0E-8 bit: 60.0 Len: 78 Query Start:282 Query End:359 Subject Strand: NEGATIVE Subject Start: 60 Subject End: 136 .........................................................................................................................................................................................................................................................................................tttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaag........................ .........................................................................................................................................................................................................................................................................................tttgtcattccgaacaccgtgaggaatctcacttggagaaggaaaaagattcatcactt-cgctctgaatgacaaaag........................ HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 84 Query Start:1 Query End:84 Subject Strand: NEGATIVE Subject Start: 62 Subject End: 144 taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... taaccgcgtttgtcattccgaacaccgtgaggaatctcacttggagaaggaaaaagattcatcactt-cgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2913_TF2914|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3109178,3109484]|307 HSP 1 e-value: 2.0E-7 bit: 58.0 Len: 29 Query Start:283 Query End:311 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 79 ..........................................................................................................................................................................................................................................................................................ttgtcattccgaacgcagtgaggaatctc........................................................................ ..........................................................................................................................................................................................................................................................................................ttgtcattccgaacgcagtgaggaatctc........................................................................ HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 28 Query Start:11 Query End:38 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 78 ..........tgtcattccgaacgcagtgaggaatctc......................................................................................................................................................................................................................................................................................................................................................... ..........tgtcattccgaacgcagtgaggaatctc......................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1169_TF1171|lipoprotein ABC transporter, permease component:ABC transporter, ATP-binding protein|POSITIVE:POSITIVE|[1251634,1251989]|356 HSP 1 e-value: 9.0E-7 bit: 56.0 Len: 32 Query Start:327 Query End:358 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 138 ......................................................................................................................................................................................................................................................................................................................................gagattcttcgcttacgctctgaatgacaaaa......................... ......................................................................................................................................................................................................................................................................................................................................gagattcttcgctcacgctctgaatgacaaaa......................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 31 Query Start:54 Query End:84 Subject Strand: NEGATIVE Subject Start: 108 Subject End: 138 .....................................................gagattcttcgcttacgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... .....................................................gagattcttcgctcacgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2745_TF2746|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2928008,2928135]|128 HSP 1 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:50 Query End:84 Subject Strand: POSITIVE Subject Start: 91 Subject End: 124 .................................................gaaagagattcttcgcttacgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... .................................................gaaagagattcttcgctt-cgctctgaatgacaaa........................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:323 Query End:357 Subject Strand: POSITIVE Subject Start: 91 Subject End: 124 ..................................................................................................................................................................................................................................................................................................................................gaaagagattcttcgcttacgctctgaatgacaaa.......................... ..................................................................................................................................................................................................................................................................................................................................gaaagagattcttcgctt-cgctctgaatgacaaa.......................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACCGCCUCUGUCAUUCCGAACGCAGUGAGGAAUCUCGCGAGGAAGAGGAAAGAGAUUCUUCGCUUACGCUCUGAAUGACAAAGUAAUUGUUAAUUGUCAAUGGUUAAUGGUUAUGCCGGAUACAUGAUUUGGCGUGUACCACGCAUAACAAUUGAAAAACAGCCCUGAAAGGGCGUAUUAAUUCAGCCCAAUGUGCAGCAAAGCGAAGCGUUGGGAAAAAAGGGCGACCCCCUCGGCGGAGGGCUGAAAGCCUGAAUAAAUAUGGAUUUGGAUGCCCCCUUUGUCAUUCCGAACGCAGUGAGGAAUCUCGCGAGGAAGAGGAAAGAGAUUCUUCGCUUACGCUCUGAAUGACAAAAGUAAUUGUCAAUUGUCAAUGGUUAA (((((.....((((((((.((.((.(((((((((((((...............(((((((((((((..((.((.(((((((((((...(((((.....(((((.((((.((((((((((((((.....)))))))))).))))....)))).)))))..)))))........((((((...((((((.((((((((...((...))...))))))))......((((....(((((....)))))......)))).........))))))...)))))).))))))))))).)).)).)))))))))))))...............)))))))))))))..)).)).))))))))......((((.(....).))))))))). (-140.31) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAACCAUUGACAAUUGACAAUUACUUUUGUCAUUCAGAGCGUAAGCGAAGAAUCUCUUUCCUCUUCCUCGCGAGAUUCCUCACUGCGUUCGGAAUGACAAAGGGGGCAUCCAAAUCCAUAUUUAUUCAGGCUUUCAGCCCUCCGCCGAGGGGGUCGCCCUUUUUUCCCAACGCUUCGCUUUGCUGCACAUUGGGCUGAAUUAAUACGCCCUUUCAGGGCUGUUUUUCAAUUGUUAUGCGUGGUACACGCCAAAUCAUGUAUCCGGCAUAACCAUUAACCAUUGACAAUUAACAAUUACUUUGUCAUUCAGAGCGUAAGCGAAGAAUCUCUUUCCUCUUCCUCGCGAGAUUCCUCACUGCGUUCGGAAUGACAGAGGCGGUUA .(((((.(((..(((((.(((...((((((((((((.(((((((.(.((.(((((((...............))))))).)).)))))))).)))))))))))).((.....................((((.((((((((......((((((....))))))..............((......)).....)))))))).......((((.....)))).))))...(((.(((((((.(((((((.(......).)))).)))))))))).)))..)).))).)))))..)))...(((((((((((.(((((((.(.((.(((((((...............))))))).)).)))))))).)))))))))))..))))) (-125.42) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 852 340 291 152 104 tfor:TF0017|5end_hypothetical_protein_10504..10734_POSITIVE 839 350 301 226 177 tfor:TF2922|5end_surface_antigen_BspA_3119122..3119352_POSITIVE 835 60 11 174 124 tfor:TF1579|5end_hypothetical_protein_1686889..1687119_POSITIVE 821 50 1 58 9 tfor:TF2994|5end_hypothetical_protein_3210605..3210835_POSITIVE 819 210 163 230 183 tfor:TF2439|5end_conserved_hypothetical_protein_2616380..2616610_POSITIVE 819 318 271 213 164 tfor:TF1593|5end_hypothetical_protein_1708859..1709089_POSITIVE 811 350 301 167 119 tfor:TF2668|5end_hypothetical_protein_2842471..2842701_POSITIVE 811 350 301 91 43 tfor:TF2667|5end_hypothetical_protein_2842395..2842625_POSITIVE 811 210 161 230 181 tfor:TF0468|5end_hypothetical_protein_486929..487159_POSITIVE 804 150 101 151 100 tfor:TF0822|5end_hypothetical_protein_880487..880717_POSITIVE 804 150 101 151 100 tfor:TF0821|5end_hypothetical_protein_879879..880109_POSITIVE 800 340 291 114 65 tfor:TF2653|5end_hypothetical_protein_2822093..2822323_POSITIVE 791 220 173 222 175 tfor:TF2171|5end_hypothetical_protein_2345485..2345715_POSITIVE 744 340 291 86 36 tfor:TF0470|5end_hypothetical_protein_487253..487483_POSITIVE 742 319 271 229 177 tfor:TF1591|5end_surface_antigen_BspA_1706387..1706617_POSITIVE 736 248 201 80 33 tfor:TF2640|5end_hypothetical_protein_2809106..2809336_POSITIVE 732 350 301 204 156 tfor:TF2669|5end_possible_Fe-S_oxidoreductase_2842971..2843201_POSITIVE 732 350 301 167 119 tfor:TF2665|5end_hypothetical_protein_2841973..2842203_POSITIVE 730 150 101 189 138 tfor:TF0679|5end_hypothetical_protein_721155..721385_POSITIVE 730 150 101 137 86 tfor:TF0678|5end_hypothetical_protein_721103..721333_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 980 259 211 73 25 tfor:TF2922|3end_surface_antigen_BspA_3121538..3121688_POSITIVE 972 257 211 53 6 tfor:TF0018|3end_hypothetical_protein_12091..12241_POSITIVE 940 259 211 85 38 tfor:TF1585|3end_hypothetical_protein_1690610..1690760_POSITIVE 940 259 211 78 31 tfor:TF1584|3end_hypothetical_protein_1690603..1690753_POSITIVE 910 250 203 73 23 tfor:TF1762|3end_hypothetical_protein_1899648..1899798_POSITIVE 852 340 291 149 101 tfor:TF0016|3end_hypothetical_protein_10581..10731_POSITIVE 816 319 271 138 89 tfor:TF2350|3end_hypothetical_protein_2515364..2515514_POSITIVE 804 150 101 134 83 tfor:TF0820|3end_hypothetical_protein_879942..880092_POSITIVE 800 340 291 63 14 tfor:TF2652|3end_hypothetical_protein_2822122..2822272_POSITIVE 784 340 291 143 93 tfor:TF0017|3end_hypothetical_protein_11231..11381_POSITIVE 766 320 275 151 109 tfor:TF2173|3end_hypothetical_protein_2346063..2346213_POSITIVE 766 320 275 151 109 tfor:TF0346|3end_hypothetical_protein_367316..367466_POSITIVE 765 248 201 151 105 tfor:TF1590|3end_hypothetical_protein_1706043..1706193_POSITIVE 755 206 163 151 108 tfor:TF1588|3end_hypothetical_protein_1702560..1702710_POSITIVE 737 320 275 151 109 tfor:TF0366|3end_hypothetical_protein_383811..383961_POSITIVE 737 320 275 151 109 tfor:TF0362|3end_hypothetical_protein_380199..380349_POSITIVE 730 47 6 151 108 tfor:TF2166|3end_hypothetical_protein_2342362..2342512_POSITIVE 720 248 201 151 105 tfor:TF1592|3end_hypothetical_protein_1708557..1708707_POSITIVE 710 217 173 115 71 tfor:TF2171|3end_hypothetical_protein_2345792..2345942_POSITIVE 687 207 163 51 2 tfor:TF0958|3end_conserved_hypothetical_protein_1004909..1005059_POSITIVE