Origin IGS: tgatatgacaggaaaaggtggttaatgtaggggcgaacccctgtgttcgccctttggggttgggttatccgaacgcaaatttcgcaaatggcgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaaaatatccctcttttcatttaaaaaaaaaattgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcgacgaaccgtgtctcgcaccctgacacccgaacgataacgcctcaatttacccccccctatttacatttattaacacctacataataactccttatgtctccgtatgtcac .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gtgacatacggagacataaggagttattatgtaggtgttaataaatgtaaataggggggggtaaattgaggcgttatcgttcgggtgtcagggtgcgagacacggttcgtcgcggcgtgcgcgtccgtccgtagcgttatcgatagtgtctgtctgcctctgcctttcattgaccgttcctgtttatttgttctttacggtgcaaagatataacaattttttttttaaatgaaaagagggatattttttccgttacttttggcttgacccaaaaagtaacccaaaggtcaaggcttcgcacgccttcgcgacgcttgcaggtcggaaaatcaggtaactcgcttggctcggacagcctgattttctttcgccctgctcgctgcttcgtcggctcaccgcccgaggcccatggacgaaataaattgtcaatggttattttctaaatacatgattcggcgtgtacccggcataacaattaaccattgacaattaacaattaatttgtcattcagagcgtaagcgaagaatctctttcttttactccgcgggattcctcacggtgttcggaatgacaaaggcggttattcgcgccatttgcgaaatttgcgttcggataacccaaccccaaagggcgaacacaggggttcgcccctacattaaccaccttttcctgtcatatca Mask Tandem Repeat Region ================================================ tgatatgacaggaaaaggtggttaatgtaggggcgaacccctgtgttcgccctttggggttgggttatccgaacgcaaatttcgcaaatggcgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaaaatatccctcttttcatttaaaaaaaaaattgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcgacgaaccgtgtctcgcaccctgacacccgaacgataacgcctcaatttacccccccctatttacatttattaacacctacataataactccttatgtctccgtatgtcac Find is-nt database================================================ Query_seq: TF1838:TF1839|TF1838:TF1839:tRNA/rRNA methyltransferase:conserved hypothetical protein:->->:1988806..1989486 681 tgatatgacaggaaaaggtggttaatgtaggggcgaacccctgtgttcgccctttggggttgggttatccgaacgcaaatttcgcaaatggcgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaaaatatccctcttttcatttaaaaaaaaaattgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcgacgaaccgtgtctcgcaccctgacacccgaacgataacgcctcaatttacccccccctatttacatttattaacacctacataataactccttatgtctccgtatgtcac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1838:TF1839|TF1838:TF1839:tRNA/rRNA methyltransferase:conserved hypothetical protein:->->:1988806..1989486 681 tgatatgacaggaaaaggtggttaatgtaggggcgaacccctgtgttcgccctttggggttgggttatccgaacgcaaatttcgcaaatggcgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaaaatatccctcttttcatttaaaaaaaaaattgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcgacgaaccgtgtctcgcaccctgacacccgaacgataacgcctcaatttacccccccctatttacatttattaacacctacataataactccttatgtctccgtatgtcac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1838:TF1839|TF1838:TF1839:tRNA/rRNA methyltransferase:conserved hypothetical protein:->->:1988806..1989486 681 tgatatgacaggaaaaggtggttaatgtaggggcgaacccctgtgttcgccctttggggttgggttatccgaacgcaaatttcgcaaatggcgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaaaatatccctcttttcatttaaaaaaaaaattgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcgacgaaccgtgtctcgcaccctgacacccgaacgataacgcctcaatttacccccccctatttacatttattaacacctacataataactccttatgtctccgtatgtcac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgatatgacaggaaaaggtggttaatgtaggggcgaacccctgtgttcgccctttggggttgggttatccgaacgcaaatttcgcaaatggcgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaaaatatccctcttttcatttaaaaaaaaaattgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcgacgaaccgtgtctcgcaccctgacacccgaacgataacgcctcaatttacccccccctatttacatttattaacacctacataataactccttatgtctccgtatgtcac Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 43 End: 141 .......................................... M F A L W G W V I R T Q I S Q M A R I T A F V I P N T V R N P A E ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 51 Strand: + Start: 18 End: 170 ................. M V N V G A N P C V R P L G L G Y P N A N F A N G A N N R L C H S E H R E E S R G V K E R D S S L T L ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: + Start: 131 End: 253 .................................................................................................................................. M P R S K R K R F F A Y A L N D K L I V N C Q W L I V M P G T R R I M Y L E N N H ............................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 58 Strand: + Start: 253 End: 426 ............................................................................................................................................................................................................................................................ M T I Y F V H G P R A V S R R S S E Q G E R K S G C P S Q A S Y L I F R P A S V A K A C E A L T F G L L F G S S Q K ............................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 246 End: 512 ..................................................................................................................................................................................................................................................... M T I D N L F R P W A S G G E P T K Q R A G R K K I R L S E P S E L P D F P T C K R R E G V R S L D L W V T F W V K P K ......................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 512 End: 652 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K G R G R Q T L S I T L R T D A H A A T N R V S H P D T R T I T P Q F T P P Y L H L L T P T ............................. Protein_Len: 45 Strand: - Start: 472 End: 606 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I K A G Y L V F L C S R D I F P L P L C V S D I V S R V S A C A A V F R T E C G S V R V M ........................................................................... Protein_Len: 55 Strand: - Start: 453 End: 617 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K F F F N N Y R Q V T F F L Y V P V T L S L C L C V S V I S L A V S P R A R R S S G H R A G Q C G F S L A E M ................................................................ Protein_Len: 60 Strand: - Start: 242 End: 502 ................................................................................................................................................................................................................................................. L S D S G L S N G S K G V Q L R R S P T R L R S R Q T V K Q T L G F T V S F I D R K E N L F F I T I D K C R L S C I F M ................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 199 End: 309 ...................................................................................................................................................................................................... H N I T I G P V R R I M Y K S F L W Q C N I E D M P R P R H A S S A A L M .................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: - Start: 25 End: 132 ........................ H L P S G R H E G K P T P N D S R L N R L H R S Y G G K D N R V G H P M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 3 End: 182 .. Y S L F L H N I Y P R V G T N A R Q P Q T I R V C I E C I A R I V A K T M G F V T L F G A S Y F F S I R R K R E S H C M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgatatgacaggaaaaggtggttaatgtaggggcgaacccctgtgttcgccctttggggttgggttatccgaacgcaaatttcgcaaatggcgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaaaatatccctcttttcatttaaaaaaaaaattgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcgacgaaccgtgtctcgcaccctgacacccgaacgataacgcctcaatttacccccccctatttacatttattaacacctacataataactccttatgtctccgtatgtcac Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgatatgacaggaaaaggtggttaatgtaggggcgaacccctgtgttcgccctttggggttgggttatccgaacgcaaatttcgcaaatggcgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaaaatatccctcttttcatttaaaaaaaaaattgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcgacgaaccgtgtctcgcaccctgacacccgaacgataacgcctcaatttacccccccctatttacatttattaacacctacataataactccttatgtctccgtatgtcac Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 61 HP_score: -8.1 Tail_Score: -2.52795 Start: 30 End: 53 Full_Region: ataacccaaccccaa agggcgaac acaggg gttcgcccc tacattaaccacctt .............................agggcgaacacaggggttcgcccc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 64 HP_score: -4.0 Tail_Score: -4.33182 Start: 250 End: 275 Full_Region: ctcaccgcccgaggc ccatggacga aataaa ttgtcaatgg ttattttctaaatac .........................................................................................................................................................................................................................................................ccatggacgaaataaattgtcaatgg...................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TF1838:TF1839|TF1838:TF1839:tRNA/rRNA methyltransferase:conserved hypothetical protein:->->:1988806..1989486 681 tgatatgacaggaaaaggtggttaatgtaggggcgaacccctgtgttcgccctttggggttgggttatccgaacgcaaatttcgcaaatggcgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaaaatatccctcttttcatttaaaaaaaaaattgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcgacgaaccgtgtctcgcaccctgacacccgaacgataacgcctcaatttacccccccctatttacatttattaacacctacataataactccttatgtctccgtatgtcac Intra-Species Hit: Count: 26 Min: 1 Max: 681 Len: 681 Subject: tfor_TF1838_TF1839|tRNA/rRNA methyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1988806,1989486]|681 HSP 1 e-value: 0.0 bit: 1243.0 Len: 681 Query Start:1 Query End:681 Subject Strand: POSITIVE Subject Start: 1 Subject End: 681 tgatatgacaggaaaaggtggttaatgtaggggcgaacccctgtgttcgccctttggggttgggttatccgaacgcaaatttcgcaaatggcgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaaaatatccctcttttcatttnnnnnnnnnnttgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcgacgaaccgtgtctcgcaccctgacacccgaacgataacgcctcaatttannnnnnnntatttacatttattaacacctacataataactccttatgtctccgtatgtcac tgatatgacaggaaaaggtggttaatgtaggggcgaacccctgtgttcgccctttggggttgggttatccgaacgcaaatttcgcaaatggcgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaaaatatccctcttttcatttaaaaaaaaaattgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcgacgaaccgtgtctcgcaccctgacacccgaacgataacgcctcaatttacccccccctatttacatttattaacacctacataataactccttatgtctccgtatgtcac Subject: tfor_TF2999_TF3000|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3215952,3216551]|600 HSP 1 e-value: 2.0E-95 bit: 351.0 Len: 209 Query Start:466 Query End:674 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 209 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcgacgaaccgtgtctcgcaccctgacacccgaacgataacgcctcaatttannnnnnnntatttacatttattaacacctacataataactccttatgtctccgt....... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttgttatatctttgcaccgtaaagaacaaataaacaggaacggtcaatgaaaggcagaggcagacagacactatcgataacgctacggacggacgcgcacgccgcaacgaaccgtgtctcgcaccctgacacccgaccgataacgcctcaatttacccccccctatttacatttattaacacctacataataactccttatgtctccgt....... Subject: tfor_TF2665_TF2667|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2842296,2842534]|239 HSP 1 e-value: 2.0E-73 bit: 278.0 Len: 215 Query Start:175 Query End:389 Subject Strand: NEGATIVE Subject Start: 18 Subject End: 239 ..............................................................................................................................................................................tgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttc-------gtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagc.................................................................................................................................................................................................................................................................................................... ..............................................................................................................................................................................tgacaaattaattgttaattgtcaatggttaattgttatgcgtggtacacgccgaatcatgtatttagaaaataacaattgaccattcatttcagcgttcgtccttgggcctcgggcggtgagccgacggagctgcgagcagggcgaaagaaaatcaggctgtccaagccaagcgagtcacctgattttctgacctgcaagcctcgcgaaggtgtgtgaagc.................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2922_TF2923|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[3121599,3122307]|709 HSP 1 e-value: 2.0E-61 bit: 238.0 Len: 171 Query Start:265 Query End:435 Subject Strand: NEGATIVE Subject Start: 151 Subject End: 329 ........................................................................................................................................................................................................................................................................ttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtg---------cgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaa...................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................ttcgtccatgggcctcgggtggtgagccgacggagcagcgagcagggcgaaagaaaatcaggctgtccgagcgaagcgagttacctgattttccgacctgcgagcgtcgcgaaggcgtgtgaagcgcacgaagccttgaccttttggttac-ttttgggtcaagccaaaagtaacggaaa...................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-29 bit: 131.0 Len: 135 Query Start:62 Query End:196 Subject Strand: NEGATIVE Subject Start: 405 Subject End: 549 .............................................................gggttatccgaacgcaaatttcgcaaatggcgcgaat----------aaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................gggttatccgaacgcaaatttcgcaaatgacgcgaatggacgcaaataaccccctttgtcattccgaacgtagtgaggaatcccgtggggaagaggaaagagattcttcgcttacgctctgaatgacaaattaatggttaattgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 3.0E-23 bit: 111.0 Len: 64 Query Start:198 Query End:261 Subject Strand: NEGATIVE Subject Start: 354 Subject End: 417 .....................................................................................................................................................................................................aatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatt.................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................aatggttaattgttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaatt.................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 2.0E-21 bit: 105.0 Len: 73 Query Start:148 Query End:220 Subject Strand: NEGATIVE Subject Start: 546 Subject End: 617 ...................................................................................................................................................aaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ...................................................................................................................................................aaagagattcatcgctt-cgcgctgaatgacaaattaatggttaattgtcaatggttaattgttatgccgggt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2920_TF2921|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3117231,3118637]|1407 HSP 1 e-value: 3.0E-60 bit: 234.0 Len: 184 Query Start:252 Query End:435 Subject Strand: NEGATIVE Subject Start: 207 Subject End: 399 ...........................................................................................................................................................................................................................................................attgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccg-agccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtg---------cgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaa...................................................................................................................................................................................................................................................... ...........................................................................................................................................................................................................................................................attgacaattaatttcgtccatgggcctcgggcggtgagccgatggagcagcgagcagggcgaaagaaaatcaggctgtctgaagcgaagcgagttacctgattttccgacctgcaagtgtcgcgaaggcgtgtgaagcgcacgaagccttgacctttgggttac-ttttgggtcaagccaaaagtaacagaaa...................................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-24 bit: 113.0 Len: 97 Query Start:104 Query End:200 Subject Strand: NEGATIVE Subject Start: 391 Subject End: 487 .......................................................................................................cctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .......................................................................................................cctttgtcattccgaacgcagtgaggaatcccgtgggaaagaggaaagagattcttcgcttacgctctgaatgacaaattaatggttaattgacaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 3.0E-17 bit: 91.7 Len: 78 Query Start:104 Query End:181 Subject Strand: NEGATIVE Subject Start: 729 Subject End: 806 .......................................................................................................cctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .......................................................................................................cctttgtcattccgaacgcagtgaggaatctcacgggggaaagggaagagattcttcgcttacgctctgaatgacaaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2500_TF2501|ABC transporter, ATP-binding protein:DNA mismatch repair protein|POSITIVE:POSITIVE|[2675363,2676419]|1057 HSP 1 e-value: 2.0E-58 bit: 228.0 Len: 181 Query Start:247 Query End:427 Subject Strand: POSITIVE Subject Start: 522 Subject End: 711 ......................................................................................................................................................................................................................................................taaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccg-agccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtg---------cgaagccttgacctttgggttactttttgggtcaagccaaaagt.............................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................................................................taaccattgacaattaatttcgtcgatgggcctcgggcggtgagctgacggagcagcgagcagggcgaaagaaaatcaggctgtccgaagcgaagcgagttacctgattttccgacctgcgagcgtcgcgaaggcgtgtgaagcgcacgaagccttgaccttttggttac-ttttgggtcaagccaaaagt.............................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-25 bit: 119.0 Len: 80 Query Start:146 Query End:225 Subject Strand: POSITIVE Subject Start: 715 Subject End: 794 .................................................................................................................................................agaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .................................................................................................................................................agaaggagattcttcgcttacgctctgaatgacatattaatggttaattgtcaattgtcaattgttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 7.0E-9 bit: 63.9 Len: 32 Query Start:63 Query End:94 Subject Strand: POSITIVE Subject Start: 340 Subject End: 371 ..............................................................ggttatccgaacgcaaatttcgcaaatggcgc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................................ggttatccgaacgcaaatttcgcaaatggcgc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 8.0E-55 bit: 216.0 Len: 155 Query Start:273 Query End:427 Subject Strand: NEGATIVE Subject Start: 216 Subject End: 379 ................................................................................................................................................................................................................................................................................tgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccg-agccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtg---------cgaagccttgacctttgggttactttttgggtcaagccaaaagt.............................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................tgggcctcgggcggtgagccgacggagcagcgagcagggcgaaagaaaatcaggctgtccgaagcgaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgtgaagcgcacgaagccttgacctttgggttacttttt-ggtcaagccaaaagt.............................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-22 bit: 109.0 Len: 99 Query Start:107 Query End:205 Subject Strand: NEGATIVE Subject Start: 530 Subject End: 627 ..........................................................................................................ttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggtta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ..........................................................................................................ttgtcattccgaacaccgtgaggaatctcgcggggtaaagggaagagattcatcgctt-cgctctgaatgacaaattaatggtcaattgttaattgtta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 8.0E-18 bit: 93.7 Len: 63 Query Start:148 Query End:210 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 209 ...................................................................................................................................................aaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgt....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................aaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgtcaattgttaattgt....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2664_TF2666|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2841791,2841957]|167 HSP 1 e-value: 1.0E-53 bit: 212.0 Len: 143 Query Start:247 Query End:389 Subject Strand: NEGATIVE Subject Start: 18 Subject End: 160 ......................................................................................................................................................................................................................................................taaccattgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtgcgaagc.................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................taaccattgacaattaatttcgtccttgggcctcgggcggtgagccgacggagctgcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagtcacctgattttctgacctgcaagcctcgcgaaggtgtgtgaagc.................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2914_TF2915|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3109704,3110561]|858 HSP 1 e-value: 3.0E-51 bit: 204.0 Len: 185 Query Start:252 Query End:436 Subject Strand: NEGATIVE Subject Start: 12 Subject End: 205 ...........................................................................................................................................................................................................................................................attgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccg-agccaagcgagttacctgattttccgacctgcaagcgtcgcgaaggcgtg---------cgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaa..................................................................................................................................................................................................................................................... ...........................................................................................................................................................................................................................................................attgacaattaattttgtccatgggcctcaggtggtgagccgacggagcagcgagcagggcgaaagaaaatcaggctgtccgaagcgaagcgagttacctgattttccgacctgcaagcctcgcgaaggcgtgtgaagagcacgaagccttgactttttggttac-ttttgggtcaagccaaaagtgacagaaaa..................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-19 bit: 97.6 Len: 97 Query Start:104 Query End:200 Subject Strand: NEGATIVE Subject Start: 197 Subject End: 292 .......................................................................................................cctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .......................................................................................................cctttgtcattccgaacaccgtgaggaatctcgcctcgaaaagggaaaagattcttcgctt-cgctctgaatgacaaattaatggttaattgacaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 3.0E-11 bit: 71.9 Len: 40 Query Start:186 Query End:225 Subject Strand: NEGATIVE Subject Start: 308 Subject End: 347 .........................................................................................................................................................................................ttgttaattgtcaatggttaattgttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .........................................................................................................................................................................................ttgttaattgtcaatggttaatggttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF2816_TF2817|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3007245,3007497]|253 HSP 1 e-value: 3.0E-48 bit: 194.0 Len: 157 Query Start:96 Query End:252 Subject Strand: POSITIVE Subject Start: 97 Subject End: 253 ...............................................................................................aataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaag-agattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataacca............................................................................................................................................................................................................................................................................................................................................................................................................................................. ...............................................................................................aataaccccctttgtcattccgaacacagtgaggaatcccgcgaggaaaaggaaaggagattcttcgcttt-gctctgaatgacaaattaattgttaattgtcaatggtcaattattatgcgtggtacacgccgaatcatgtatttagaaaataacca............................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2668_TF2670|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2842794,2842918]|125 HSP 1 e-value: 3.0E-45 bit: 184.0 Len: 125 Query Start:254 Query End:378 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 125 .............................................................................................................................................................................................................................................................tgacaatttatttcgtccatgggcctcgggcggtgagccgacgaagcagcgagcagggcgaaagaaaatcaggctgtccgagccaagcgagttacctgattttccgacctgcaagcgtcgcgaag............................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................tgacaattaatttcgtccttgggcctcgggcggtgagccgacggagctgcgagcaggtcgaaagaaaatcaggctgtccgagccaagcgagtcacctgattttctgacctgcaagcctcgcgaag............................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1848_TF1850|conserved hypothetical protein:Na+/H+-exchanging protein|POSITIVE:POSITIVE|[1998005,1998681]|677 HSP 1 e-value: 6.0E-40 bit: 167.0 Len: 120 Query Start:106 Query End:225 Subject Strand: POSITIVE Subject Start: 455 Subject End: 574 .........................................................................................................tttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .........................................................................................................tttgtcattccgaacaccgtgaggaatctcgcaggggaaagggaagagattcttcgctgacgctctgaatgacaaattaatggttaatggtcaatggttaattgttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 7.0E-15 bit: 83.8 Len: 42 Query Start:184 Query End:225 Subject Strand: POSITIVE Subject Start: 179 Subject End: 220 .......................................................................................................................................................................................aattgttaattgtcaatggttaattgttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .......................................................................................................................................................................................aattgttaattgtcaatggttaattgttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF1841_TF1842|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1992328,1992710]|383 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 126 Query Start:98 Query End:223 Subject Strand: POSITIVE Subject Start: 1 Subject End: 126 .................................................................................................taaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtaca.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................taaccgcctctgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaagtaattgttaattgtcaatggttaatggttatgccggataca.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-23 bit: 111.0 Len: 103 Query Start:104 Query End:206 Subject Strand: POSITIVE Subject Start: 280 Subject End: 383 .......................................................................................................cctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgac-aaattaattgttaattgtcaatggttaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .......................................................................................................cctttgtcattccgaacgcagtgaggaatctcgcgaggaagaggaaagagattcttcgcttacgctctgaatgacaaaagtaattgtcaattgtcaatggttaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1187_TF1188|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1269933,1270295]|363 HSP 1 e-value: 4.0E-35 bit: 151.0 Len: 114 Query Start:148 Query End:261 Subject Strand: POSITIVE Subject Start: 75 Subject End: 181 ...................................................................................................................................................aaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatt.................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................aaagagattcatcgcttacgctctgaatgacaaattaatggttaat-------ggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgataatt.................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-14 bit: 81.8 Len: 53 Query Start:384 Query End:436 Subject Strand: POSITIVE Subject Start: 26 Subject End: 77 ...............................................................................................................................................................................................................................................................................................................................................................................................cgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaa..................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................cgaagccttgaccttttggttactttt-gggtcaagccaaaagtaacggaaaa..................................................................................................................................................................................................................................................... Subject: tfor_TF0603_TF0604|glycosyltransferase:hypothetical protein|POSITIVE:POSITIVE|[634899,635524]|626 HSP 1 e-value: 4.0E-35 bit: 151.0 Len: 131 Query Start:66 Query End:196 Subject Strand: POSITIVE Subject Start: 103 Subject End: 233 .................................................................tatccgaacgcaaatttcgcaaatgg-cgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................tatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgctt-cgctctgaatgacaaattaattgttaattgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-9 bit: 63.9 Len: 52 Query Start:174 Query End:225 Subject Strand: POSITIVE Subject Start: 50 Subject End: 101 .............................................................................................................................................................................atgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................atgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF2823_TF2824|TPR-containing protein:nucleoside-transporting protein nupG|POSITIVE:POSITIVE|[3014398,3014840]|443 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 122 Query Start:104 Query End:225 Subject Strand: POSITIVE Subject Start: 102 Subject End: 222 .......................................................................................................cctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .......................................................................................................cctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-7 bit: 58.0 Len: 37 Query Start:62 Query End:98 Subject Strand: POSITIVE Subject Start: 28 Subject End: 64 .............................................................gggttatccgaacgcaaatttcgcaaatggcgcgaat....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................gggttatccgaacgcaaatttcgcaaataacgcgaat....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1578_TF1579|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1686477,1687028]|552 HSP 1 e-value: 6.0E-28 bit: 127.0 Len: 119 Query Start:107 Query End:225 Subject Strand: NEGATIVE Subject Start: 402 Subject End: 521 ..........................................................................................................ttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaa-gagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ..........................................................................................................ttgtcattccgaacgcagtgaggaatctcgcggggtaaaagaaaagagattcatcgctcacgctctgaatgacatattaattgttaatggttaattgttaattgttatgcgtggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 9.0E-27 bit: 123.0 Len: 127 Query Start:107 Query End:233 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 121 ..........................................................................................................ttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaa-gagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatca................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ..........................................................................................................ttgtcattccgaacgcagtgaggaatctcgcggggtaaaggaaaagagattcttcgcttacgctctgaatgacaaattaatggttaatt-------gttaattgttatgcgtggtacacgccgaatca................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:62 Query End:91 Subject Strand: NEGATIVE Subject Start: 192 Subject End: 221 .............................................................gggttatccgaacgcaaatttcgcaaatgg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................gggttatccgaacgcaaatttcgcaaatgg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF1483_TF1484|glycosyltransferase family protein:penicillin binding protein|POSITIVE:POSITIVE|[1578886,1579698]|813 HSP 1 e-value: 6.0E-28 bit: 127.0 Len: 119 Query Start:105 Query End:223 Subject Strand: POSITIVE Subject Start: 223 Subject End: 341 ........................................................................................................ctttgtcattccgaacaccgtgaggaatcccgcggag-taaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtaca.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................ctttgtcattccgaacgtagtgaggaatcccgccccggtaaagggaagagattcttcgctt-cgctctgaatgacaaattaatggttaattgtcaattgttaattgttatgccgggtaca.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-10 bit: 69.9 Len: 43 Query Start:181 Query End:223 Subject Strand: POSITIVE Subject Start: 1 Subject End: 43 ....................................................................................................................................................................................attaattgttaattgtcaatggttaattgttatgccgggtaca.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................attaatggttaattgtcaattgttaattgttatgccgggtaca.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2996_TF2997|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3211182,3211547]|366 HSP 1 e-value: 3.0E-26 bit: 121.0 Len: 69 Query Start:167 Query End:235 Subject Strand: NEGATIVE Subject Start: 218 Subject End: 286 ......................................................................................................................................................................gctctgaatgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................gctctgaatgacaaattaattgttaattgtcaatggttaattgttatgcgtggtacacgccgaatcatg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-13 bit: 79.8 Len: 52 Query Start:384 Query End:435 Subject Strand: NEGATIVE Subject Start: 291 Subject End: 341 ...............................................................................................................................................................................................................................................................................................................................................................................................cgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaa...................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................cgaagccttgacctttgggttac-ttttgggtcaagccaaaagtaacagaaa...................................................................................................................................................................................................................................................... HSP 3 e-value: 5.0E-13 bit: 77.8 Len: 59 Query Start:179 Query End:237 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 217 ..................................................................................................................................................................................aaattaattgttaattgtcaatggttaattgttatgccgggtacacgccgaatcatgta............................................................................................................................................................................................................................................................................................................................................................................................................................................................ ..................................................................................................................................................................................aaattaattgttaattgtcaattgtcaatggttatgcgtggtacacgccgaatcatgta............................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 4 e-value: 4.0E-7 bit: 58.0 Len: 29 Query Start:62 Query End:90 Subject Strand: NEGATIVE Subject Start: 42 Subject End: 70 .............................................................gggttatccgaacgcaaatttcgcaaatg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................gggttatccgaacgcaaatttcgcaaatg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1846_TF1847|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1997076,1997528]|453 HSP 1 e-value: 2.0E-24 bit: 115.0 Len: 93 Query Start:167 Query End:259 Subject Strand: POSITIVE Subject Start: 56 Subject End: 155 ......................................................................................................................................................................gctctgaatgacaaattaattgttaattgtcaatggttaattgtta-------tgccgggtacacgccgaatcatgtatttagaaaataaccattgacaa...................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................gctctgaatgacaaattaatggttaattgtcaatggttaatggttaatggttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgacaa...................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-11 bit: 71.9 Len: 52 Query Start:385 Query End:436 Subject Strand: POSITIVE Subject Start: 1 Subject End: 51 ................................................................................................................................................................................................................................................................................................................................................................................................gaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaa..................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................gaagccttgaccttttggttactttt-gggtcaagccaaaagtaacagaaaa..................................................................................................................................................................................................................................................... Subject: tfor_TF2921_TF2922|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[3118851,3119261]|411 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 71 Query Start:198 Query End:268 Subject Strand: NEGATIVE Subject Start: 25 Subject End: 95 .....................................................................................................................................................................................................aatggttaattgttatgccgggtacacgccgaatcatgtatttagaaaataaccattgacaatttatttcg............................................................................................................................................................................................................................................................................................................................................................................................................................. .....................................................................................................................................................................................................aatggttaattgttatgcgtggtacacgccgaatcatgtatttagaaaataaccattgaccattcatttcg............................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 93 Query Start:104 Query End:196 Subject Strand: NEGATIVE Subject Start: 83 Subject End: 174 .......................................................................................................cctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .......................................................................................................cctttgtcattccgaacgtagtgaggaatcccgtgggg-aaaggaaaaagattcttcgcttacgctctgaatgacaaattaatggttaattgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 5.0E-19 bit: 97.6 Len: 93 Query Start:104 Query End:196 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 347 .......................................................................................................cctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .......................................................................................................cctttgtcattccgaacgtagtgaggaatctcacggggaagagggaagagattcttcgcttacgctctgaatgacaaattaatggttaattgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 2.0E-9 bit: 65.9 Len: 45 Query Start:181 Query End:225 Subject Strand: NEGATIVE Subject Start: 363 Subject End: 407 ....................................................................................................................................................................................attaattgttaattgtcaatggttaattgttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ....................................................................................................................................................................................attaatggttaattgtcaattgttaatggttatgccgggtacacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 5 e-value: 7.0E-9 bit: 63.9 Len: 36 Query Start:63 Query End:98 Subject Strand: NEGATIVE Subject Start: 212 Subject End: 247 ..............................................................ggttatccgaacgcaaatttcgcaaatggcgcgaat....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................................ggttatccgaacgcaaatttcgcaaatgacgcgaat....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2815_TF2816|meso-diaminopimelate D-dehydrogenase:hypothetical protein|POSITIVE:POSITIVE|[3006481,3007064]|584 HSP 1 e-value: 3.0E-11 bit: 71.9 Len: 59 Query Start:62 Query End:120 Subject Strand: POSITIVE Subject Start: 522 Subject End: 581 .............................................................gggttatccgaacgcaaatttcgcaaatgg-cgcgaataaccgcctttgtcattccgaac................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................gggttatccgaacgcgaatctcgcaaatggacgcgaatacccccctttgtcattccgaac................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 32 Query Start:265 Query End:296 Subject Strand: POSITIVE Subject Start: 176 Subject End: 207 ........................................................................................................................................................................................................................................................................ttcgtccatgggcctcgggcggtgagccgacg................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................................................................................................................................................................................................................................ttcgtccttgggcctcgggcggtgagccgacg................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF3105_TF3106|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3338403,3338494]|92 HSP 1 e-value: 4.0E-10 bit: 67.9 Len: 42 Query Start:148 Query End:189 Subject Strand: POSITIVE Subject Start: 49 Subject End: 89 ...................................................................................................................................................aaagagattcttcgcttacgctctgaatgacaaattaattgt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...................................................................................................................................................aaagagattcttcgctt-cgctctgaatgacaaattaattgt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 7.0E-6 bit: 54.0 Len: 43 Query Start:385 Query End:427 Subject Strand: POSITIVE Subject Start: 1 Subject End: 42 ................................................................................................................................................................................................................................................................................................................................................................................................gaagccttgacctttgggttactttttgggtcaagccaaaagt.............................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................gaagccttgactttttggttactttt-gggtcaagccaaaagt.............................................................................................................................................................................................................................................................. Subject: tfor_TF1169_TF1171|lipoprotein ABC transporter, permease component:ABC transporter, ATP-binding protein|POSITIVE:POSITIVE|[1251634,1251989]|356 HSP 1 e-value: 4.0E-10 bit: 67.9 Len: 54 Query Start:384 Query End:437 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 220 ...............................................................................................................................................................................................................................................................................................................................................................................................cgaagccttgacctttgggttactttttgggtcaagccaaaagtaacggaaaaa.................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................cgaagccttgaccttttggttac-ttttgggtcaagccaaaagtgacagaaaaa.................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-6 bit: 54.0 Len: 31 Query Start:151 Query End:181 Subject Strand: NEGATIVE Subject Start: 108 Subject End: 138 ......................................................................................................................................................gagattcttcgcttacgctctgaatgacaaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................gagattcttcgctcacgctctgaatgacaaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2745_TF2746|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2928008,2928135]|128 HSP 1 e-value: 7.0E-9 bit: 63.9 Len: 40 Query Start:146 Query End:185 Subject Strand: POSITIVE Subject Start: 90 Subject End: 128 .................................................................................................................................................agaaagagattcttcgcttacgctctgaatgacaaattaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .................................................................................................................................................agaaagagattcttcgctt-cgctctgaatgacaaattaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 40 Query Start:350 Query End:389 Subject Strand: POSITIVE Subject Start: 1 Subject End: 40 .............................................................................................................................................................................................................................................................................................................................................................tgattttccgacctgcaagcgtcgcgaaggcgtgcgaagc.................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................tgattttccggcctgcaagcgtcacgagggcgtgcgaagc.................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-6 bit: 56.0 Len: 44 Query Start:384 Query End:427 Subject Strand: POSITIVE Subject Start: 44 Subject End: 86 ...............................................................................................................................................................................................................................................................................................................................................................................................cgaagccttgacctttgggttactttttgggtcaagccaaaagt.............................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................cgaagccttgatcttttggttactttt-gggtcaagccaaaagt.............................................................................................................................................................................................................................................................. Subject: tfor_TF0538_TF0540|hypothetical protein:conserved hypothetical protein; possible surface protein|POSITIVE:POSITIVE|[567196,567425]|230 HSP 1 e-value: 7.0E-9 bit: 63.9 Len: 44 Query Start:384 Query End:427 Subject Strand: POSITIVE Subject Start: 10 Subject End: 52 ...............................................................................................................................................................................................................................................................................................................................................................................................cgaagccttgacctttgggttactttttgggtcaagccaaaagt.............................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................cgaagccttgacctttgggttac-ttttgagtcaagccaaaagt.............................................................................................................................................................................................................................................................. HSP 2 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:151 Query End:181 Subject Strand: POSITIVE Subject Start: 62 Subject End: 92 ......................................................................................................................................................gagattcttcgcttacgctctgaatgacaaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................gagattcttcgcttacgctctgaatgacaaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUAUGACAGGAAAAGGUGGUUAAUGUAGGGGCGAACCCCUGUGUUCGCCCUUUGGGGUUGGGUUAUCCGAACGCAAAUUUCGCAAAUGGCGCGAAUAACCGCCUUUGUCAUUCCGAACACCGUGAGGAAUCCCGCGGAGUAAAAGAAAGAGAUUCUUCGCUUACGCUCUGAAUGACAAAUUAAUUGUUAAUUGUCAAUGGUUAAUUGUUAUGCCGGGUACACGCCGAAUCAUGUAUUUAGAAAAUAACCAUUGACAAUUUAUUUCGUCCAUGGGCCUCGGGCGGUGAGCCGACGAAGCAGCGAGCAGGGCGAAAGAAAAUCAGGCUGUCCGAGCCAAGCGAGUUACCUGAUUUUCCGACCUGCAAGCGUCGCGAAGGCGUGCGAAGCCUUGACCUUUGGGUUACUUUUUGGGUCAAGCCAAAAGUAACGGAAAAAAUAUCCCUCUUUUCAUUUAAAAAAAAAAUUGUUAUAUCUUUGCACCGUAAAGAACAAAUAAACAGGAACGGUCAAUGAAAGGCAGAGGCAGACAGACACUAUCGAUAACGCUACGGACGGACGCGCACGCCGCGACGAACCGUGUCUCGCACCCUGACACCCGAACGAUAACGCCUCAAUUUACCCCCCCCUAUUUACAUUUAUUAACACCUACAUAAUAACUCCUUAUGUCUCCGUAUGUCAC (((((((...(((..(((((...((((((.((((((((......))))))))...((((..((((.....((..((.....(((...((((.(((((........((((((((((.((...(((((.((...))))))).((((..(((........)))..))))..)).)))))))))).........(((((((((((((((.((......(..((((((.(......).))))))..).)).)))))))))))))))...)))))))))(((..(((((..(((((.(.(((.........(((((.((...((((((((((..(..((.......))..)..)))))))))))).)))))...((((((...((((((((..(((((..(((((..(((((((((.((......)))))))))))..........(((...((((......)))).....(((((...(((((((...)))))))...)))))...)))..........)))))..)))))...................(((....).))....))))))))))))))...)))).)))))..)))))..)))...)))....)).)).....)))).))))....))))))......)))))((((((.......)))))).))).))))))). (-215.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUGACAUACGGAGACAUAAGGAGUUAUUAUGUAGGUGUUAAUAAAUGUAAAUAGGGGGGGGUAAAUUGAGGCGUUAUCGUUCGGGUGUCAGGGUGCGAGACACGGUUCGUCGCGGCGUGCGCGUCCGUCCGUAGCGUUAUCGAUAGUGUCUGUCUGCCUCUGCCUUUCAUUGACCGUUCCUGUUUAUUUGUUCUUUACGGUGCAAAGAUAUAACAAUUUUUUUUUUAAAUGAAAAGAGGGAUAUUUUUUCCGUUACUUUUGGCUUGACCCAAAAAGUAACCCAAAGGUCAAGGCUUCGCACGCCUUCGCGACGCUUGCAGGUCGGAAAAUCAGGUAACUCGCUUGGCUCGGACAGCCUGAUUUUCUUUCGCCCUGCUCGCUGCUUCGUCGGCUCACCGCCCGAGGCCCAUGGACGAAAUAAAUUGUCAAUGGUUAUUUUCUAAAUACAUGAUUCGGCGUGUACCCGGCAUAACAAUUAACCAUUGACAAUUAACAAUUAAUUUGUCAUUCAGAGCGUAAGCGAAGAAUCUCUUUCUUUUACUCCGCGGGAUUCCUCACGGUGUUCGGAAUGACAAAGGCGGUUAUUCGCGCCAUUUGCGAAAUUUGCGUUCGGAUAACCCAACCCCAAAGGGCGAACACAGGGGUUCGCCCCUACAUUAACCACCUUUUCCUGUCAUAUCA ((((((...(((.((((((.......)))))).((((......((((((....((((.((((.(((((........((((((((((.((.(((((.(((...(((..((..((((((...(((((((..(((.(((.....(((((...))))).((((..((((((.....(((((...................)))))..((((((((.....(((((((((.....))))))))).))))))))...(((((((((((......)).)))))))))..))))))..))))..))))))....)).)))))..(((((.(((((((((((((...(((.......)))...)))))))))))...)).))))).))))))..))))).)))..))))))).))))..))))))....(((((((((((((((.........((((((......))))))...(......)...)))))))))))))))..)))))..((((((((((.((((......((((((.....))))))....(((.(((....))).))).)))).)))))))))).((((...((((((.....))))))..)))).........))))..))))...((((((((......)))))))).))))))...))))...))))))))).... (-227.51) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1080 330 281 53 4 tfor:TF1578|5end_hypothetical_protein_1686187..1686417_POSITIVE 1052 350 302 202 154 tfor:TF2666|5end_hypothetical_protein_2841818..2842048_POSITIVE 1048 330 281 53 4 tfor:TF2997|5end_hypothetical_protein_3211408..3211638_POSITIVE 995 350 301 58 9 tfor:TF1168|5end_hypothetical_protein_1248755..1248985_POSITIVE 972 350 302 188 140 tfor:TF2670|5end_hypothetical_protein_2842779..2843009_POSITIVE 928 389 341 97 49 tfor:TF1588|5end_hypothetical_protein_1702268..1702498_POSITIVE 924 120 71 228 179 tfor:TF2996|5end_hypothetical_protein_3210802..3211032_POSITIVE 921 138 91 49 2 tfor:TF2994|5end_hypothetical_protein_3210605..3210835_POSITIVE 868 307 265 231 189 tfor:TF2667|5end_hypothetical_protein_2842395..2842625_POSITIVE 801 160 111 82 32 tfor:TF0470|5end_hypothetical_protein_487253..487483_POSITIVE 781 420 371 65 8 tfor:TF0685|5end_hypothetical_protein_730852..731082_POSITIVE 776 389 344 46 1 tfor:TF0469|5end_hypothetical_protein_486960..487190_POSITIVE 769 80 31 176 118 tfor:TF1580|5end_conserved_hypothetical_protein;_possible_fibronectin_domain_containing_protein_1687187..1687417_POSITIVE 749 299 251 147 89 tfor:TF2664|5end_hypothetical_protein_2841399..2841629_POSITIVE 728 200 151 230 182 tfor:TF2669|5end_possible_Fe-S_oxidoreductase_2842971..2843201_POSITIVE 728 200 151 193 145 tfor:TF2668|5end_hypothetical_protein_2842471..2842701_POSITIVE 728 200 151 193 145 tfor:TF2665|5end_hypothetical_protein_2841973..2842203_POSITIVE 711 420 373 54 9 tfor:TF0468|5end_hypothetical_protein_486929..487159_POSITIVE 702 160 111 148 100 tfor:TF0017|5end_hypothetical_protein_10504..10734_POSITIVE 689 179 131 196 147 tfor:TF1579|5end_hypothetical_protein_1686889..1687119_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1126 320 271 125 76 tfor:TF2438|3end_hypothetical_protein_2616157..2616307_POSITIVE 1086 320 273 125 78 tfor:TF1167|3end_hypothetical_protein_1248932..1249082_POSITIVE 1079 320 271 125 76 tfor:TF2921|3end_hypothetical_protein_3118790..3118940_POSITIVE 1049 330 281 135 86 tfor:TF2640|3end_hypothetical_protein_2809533..2809683_POSITIVE 1040 320 272 125 77 tfor:TF0468|3end_hypothetical_protein_487188..487338_POSITIVE 1028 350 302 62 14 tfor:TF2666|3end_hypothetical_protein_2842263..2842413_POSITIVE 972 350 302 62 14 tfor:TF2668|3end_hypothetical_protein_2842733..2842883_POSITIVE 949 369 321 53 5 tfor:TF2667|3end_hypothetical_protein_2842705..2842855_POSITIVE 949 369 321 53 5 tfor:TF2664|3end_hypothetical_protein_2841730..2841880_POSITIVE 936 630 585 46 1 tfor:TF2999|3end_conserved_hypothetical_protein_3215891..3216041_POSITIVE 932 315 273 151 109 tfor:TF0685|3end_hypothetical_protein_731132..731282_POSITIVE 925 369 321 53 5 tfor:TF2665|3end_hypothetical_protein_2842235..2842385_POSITIVE 923 399 351 99 42 tfor:TF1577|3end_hypothetical_protein_1686234..1686384_POSITIVE 873 306 265 151 110 tfor:TF0469|3end_hypothetical_protein_487228..487378_POSITIVE 870 389 341 54 6 tfor:TF2994|3end_hypothetical_protein_3210849..3210999_POSITIVE 750 160 111 139 89 tfor:TF0017|3end_hypothetical_protein_11231..11381_POSITIVE 736 138 91 145 93 tfor:TF2166|3end_hypothetical_protein_2342362..2342512_POSITIVE 728 200 151 98 50 tfor:TF2639|3end_hypothetical_protein_2809333..2809483_POSITIVE 726 138 91 145 93 tfor:TF0362|3end_hypothetical_protein_380199..380349_POSITIVE 724 138 91 145 93 tfor:TF0366|3end_hypothetical_protein_383811..383961_POSITIVE