Origin IGS: ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagctaaacacctcaacaattcaacaactcaacacctcaacagctcaacaattaaacatctcaacacctcaacacctcaacgccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatgtttatatcccggcggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtttaatgttccgtttaaccgcacgggttatacgtttaaccggattcgtgatccgtttagcctccggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcacctccggaggtgttccgtttagcctcagaggcattccgtttagccggattcgtgttccgtttctcctttttggtgttccgtttaaccggtttcgtgatccgtttcacctaaggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcatctccgggggtgttccgtttagcctcagaggtgatatataatatcataaaggtattccgtatcattccggaggtgatatgcaccatttcggcagcctcccgtatgatgtgcaaaggcccgatcgggaagcgcgcccttctctccctctccctcacgtttgcctgccgaaaaggggagagagagcctta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaggctctctctccccttttcggcaggcaaacgtgagggagagggagagaagggcgcgcttcccgatcgggcctttgcacatcatacgggaggctgccgaaatggtgcatatcacctccggaatgatacggaatacctttatgatattatatatcacctctgaggctaaacggaacacccccggagatgaaacgaaaccttaaaaacaagaaacggaacgtcaaaaaggtgatacggaacacctccttaggtgaaacggatcacgaaaccggttaaacggaacaccaaaaaggagaaacggaacacgaatccggctaaacggaatgcctctgaggctaaacggaacacctccggaggtgaaacgaaaccttaaaaacaagaaacggaacgtcaaaaaggtgatacggaacacctccggaggctaaacggatcacgaatccggttaaacgtataacccgtgcggttaaacggaacattaaacccggattccgcaatagaagaaataaaaatgaatttaattcaggccttcagccctccgccgggatataaacatcgataccccacccttgcgggatggggctgaaatatgtcgggctttcagcccttgggcctcgggcgagctaaccccttcggggcgttgaggtgttgaggtgttgagatgtttaattgttgagctgttgaggtgttgagttgttgaattgttgaggtgtttagctgcccgctgtaaaagccctgaaagggcgcgttaattcagcccaatgtgcagcgaagcgaagcgttgggaaaaaaggcgtccctccccctcggcggagggctgaaagcctgacgtaattcaa Mask Tandem Repeat Region ================================================ ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatgtttatatcccggcggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtttaatgttccgtttaaccgcacgggttatacgtttaaccggattcgtgatccgtttagcctccggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcacctccggaggtgttccgtttagcctcagaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacctaaggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcatctccgggggtgttccgtttagcctcagaggtgatatataatatcataaaggtattccgtatcattccggaggtgatatgcaccatttcggcagcctcccgtatgatgtgcaaaggcccgatcgggaagcgcgcccttctctccctctccctcacgtttgcctgccgaaaaggggagagagagcctta Find is-nt database================================================ Query_seq: TF1762:TF1763|TF1762:TF1763:hypothetical protein:K+-dependent Na+/Ca+ exchanger related-protein:->->:1899709..1900545 837 ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagctaaacacctcaacaattcaacaactcaacacctcaacagctcaacaattaaacatctcaacacctcaacacctcaacgccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatgtttatatcccggcggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtttaatgttccgtttaaccgcacgggttatacgtttaaccggattcgtgatccgtttagcctccggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcacctccggaggtgttccgtttagcctcagaggcattccgtttagccggattcgtgttccgtttctcctttttggtgttccgtttaaccggtttcgtgatccgtttcacctaaggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcatctccgggggtgttccgtttagcctcagaggtgatatataatatcataaaggtattccgtatcattccggaggtgatatgcaccatttcggcagcctcccgtatgatgtgcaaaggcccgatcgggaagcgcgcccttctctccctctccctcacgtttgcctgccgaaaaggggagagagagcctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1762:TF1763|TF1762:TF1763:hypothetical protein:K+-dependent Na+/Ca+ exchanger related-protein:->->:1899709..1900545 837 ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagctaaacacctcaacaattcaacaactcaacacctcaacagctcaacaattaaacatctcaacacctcaacacctcaacgccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatgtttatatcccggcggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtttaatgttccgtttaaccgcacgggttatacgtttaaccggattcgtgatccgtttagcctccggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcacctccggaggtgttccgtttagcctcagaggcattccgtttagccggattcgtgttccgtttctcctttttggtgttccgtttaaccggtttcgtgatccgtttcacctaaggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcatctccgggggtgttccgtttagcctcagaggtgatatataatatcataaaggtattccgtatcattccggaggtgatatgcaccatttcggcagcctcccgtatgatgtgcaaaggcccgatcgggaagcgcgcccttctctccctctccctcacgtttgcctgccgaaaaggggagagagagcctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1762:TF1763|TF1762:TF1763:hypothetical protein:K+-dependent Na+/Ca+ exchanger related-protein:->->:1899709..1900545 837 ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagctaaacacctcaacaattcaacaactcaacacctcaacagctcaacaattaaacatctcaacacctcaacacctcaacgccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatgtttatatcccggcggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtttaatgttccgtttaaccgcacgggttatacgtttaaccggattcgtgatccgtttagcctccggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcacctccggaggtgttccgtttagcctcagaggcattccgtttagccggattcgtgttccgtttctcctttttggtgttccgtttaaccggtttcgtgatccgtttcacctaaggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcatctccgggggtgttccgtttagcctcagaggtgatatataatatcataaaggtattccgtatcattccggaggtgatatgcaccatttcggcagcctcccgtatgatgtgcaaaggcccgatcgggaagcgcgcccttctctccctctccctcacgtttgcctgccgaaaaggggagagagagcctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagctaaacacctcaacaattcaacaactcaacacctcaacagctcaacaattaaacatctcaacacctcaacacctcaacgccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatgtttatatcccggcggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtttaatgttccgtttaaccgcacgggttatacgtttaaccggattcgtgatccgtttagcctccggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcacctccggaggtgttccgtttagcctcagaggcattccgtttagccggattcgtgttccgtttctcctttttggtgttccgtttaaccggtttcgtgatccgtttcacctaaggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcatctccgggggtgttccgtttagcctcagaggtgatatataatatcataaaggtattccgtatcattccggaggtgatatgcaccatttcggcagcctcccgtatgatgtgcaaaggcccgatcgggaagcgcgcccttctctccctctccctcacgtttgcctgccgaaaaggggagagagagcctta Predict ORF larger than 30AA ================================================ Protein_Len: 41 Strand: + Start: 1 End: 123 M N Y V R L S A L R R G G G T P F F P T L R F A A H W A E L T R P F R A F T A G S .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: + Start: 87 End: 236 ...................................................................................... M N A P F Q G F Y S G Q L N T S T I Q Q L N T S T A Q Q L N I S T P Q H L N A P K G L A R P R P K G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: + Start: 170 End: 319 ......................................................................................................................................................................... M K H L N T S T P Q R P E G V S S P E A Q G L K A R H I S A P S R K G G V S M F I S R R R A E G L N ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 318 End: 443 ............................................................................................................................................................................................................................................................................................................................. M K F I F I S S I A E S G F N V P F N R T G Y T F N R I R D P F S L R R C S V S P F .......................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: + Start: 343 End: 498 ...................................................................................................................................................................................................................................................................................................................................................... M R N P G L M F R L T A R V I R L T G F V I R L A S G G V P Y H L F D V P F L V F K V S F H L R R C S V ................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: + Start: 489 End: 587 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M F R L A S E A F R L A G F V F R F S F L V F R L T G F V I R F T .......................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 425 End: 613 ........................................................................................................................................................................................................................................................................................................................................................................................................................................ M F R I T F L T F R F L F L R F R F T S G G V P F S L R G I P F S R I R V P F L L F G V P F N R F R D P F H L R R C S V ................................................................................................................................................................................................................................ Protein_Len: 31 Strand: + Start: 595 End: 687 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M F R I T F L T F R F L F L R F R F I S G G V P F S L R G D I ...................................................................................................................................................... Protein_Len: 59 Strand: + Start: 659 End: 835 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M F R L A S E V I Y N I I K V F R I I P E V I C T I S A A S R M M C K G P I G K R A L L S L S L T F A C R K G E R E P .. Protein_Len: 45 Strand: + Start: 703 End: 837 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M P Y H S G G D M H H F G S L P Y D V Q R P D R E A R P S L P L P H V C L P K R G E R A L Protein_Len: 56 Strand: - Start: 637 End: 804 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ P K T E D G P T N R K A E S T I Y L I M F T N R I M G S T I H V M E A A E R I I H L P G I P F R A R R E R E R M ................................. Protein_Len: 41 Strand: - Start: 564 End: 686 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G T E H D T E G L S T N R I V K K V N R K K N K L N R K M E P P T G N L R L P S M ....................................................................................................................................................... Protein_Len: 40 Strand: - Start: 467 End: 586 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. P K T E G G S T N R K A E S A N R K A P N T N R K E K K T N R K V P K T I R K M ........................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: - Start: 415 End: 528 .............................................................................................................................................................................................................................................................................................................................................................................................................................. G G S T N R I V K K V N R K K N K L N R K V E P P T G N L R L P M G N L R M ..................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: - Start: 291 End: 407 .................................................................................................................................................................................................................................................................................................. I G A S P Q L G S N F E N K N R R N R F G P K I N R K V A R T I R K V P N T M .............................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 41 Strand: - Start: 257 End: 379 ................................................................................................................................................................................................................................................................ G W G A L T P Y R H K Y G P P P S F A Q I L N M K I E E I A S D P N L T G N L R M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: - Start: 199 End: 291 ...................................................................................................................................................................................................... R G S P T L E G S A W P S F A R C I E A G D R L P P T D I N M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 38 Strand: - Start: 9 End: 122 ........ T L S E A R R R P P P V G K K G V S R K A A C Q A S N V R G K L A K V A P M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagctaaacacctcaacaattcaacaactcaacacctcaacagctcaacaattaaacatctcaacacctcaacacctcaacgccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatgtttatatcccggcggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtttaatgttccgtttaaccgcacgggttatacgtttaaccggattcgtgatccgtttagcctccggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcacctccggaggtgttccgtttagcctcagaggcattccgtttagccggattcgtgttccgtttctcctttttggtgttccgtttaaccggtttcgtgatccgtttcacctaaggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcatctccgggggtgttccgtttagcctcagaggtgatatataatatcataaaggtattccgtatcattccggaggtgatatgcaccatttcggcagcctcccgtatgatgtgcaaaggcccgatcgggaagcgcgcccttctctccctctccctcacgtttgcctgccgaaaaggggagagagagcctta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagctaaacacctcaacaattcaacaactcaacacctcaacagctcaacaattaaacatctcaacacctcaacacctcaacgccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatgtttatatcccggcggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtttaatgttccgtttaaccgcacgggttatacgtttaaccggattcgtgatccgtttagcctccggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcacctccggaggtgttccgtttagcctcagaggcattccgtttagccggattcgtgttccgtttctcctttttggtgttccgtttaaccggtttcgtgatccgtttcacctaaggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcatctccgggggtgttccgtttagcctcagaggtgatatataatatcataaaggtattccgtatcattccggaggtgatatgcaccatttcggcagcctcccgtatgatgtgcaaaggcccgatcgggaagcgcgcccttctctccctctccctcacgtttgcctgccgaaaaggggagagagagcctta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 77 HP_score: -9.1 Tail_Score: -4.07568 Start: 95 End: 107 Full_Region: GGGCTGAATTAACGC GCCCT TTC AGGGC TTTTACAGCGGGCAG ..............................................................................................GCCCTTTCAGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 87 HP_score: -4.9 Tail_Score: -5.50774 Start: 315 End: 327 Full_Region: GGAGGGCTGAAGGCC TGAAT TAA ATTCA TTTTTATTTCTTCTA ..........................................................................................................................................................................................................................................................................................................................TGAATTAAATTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 59 HP_score: -6.3 Tail_Score: -3.55801 Start: 367 End: 389 Full_Region: CCGGGTTTAATGTTC CGTTTAACC GCACG GGTTATACG TTTAACCGGATTCGT ..............................................................................................................................................................................................................................................................................................................................................................................CGTTTAACCGCACGGGTTATACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: TF1762:TF1763|TF1762:TF1763:hypothetical protein:K+-dependent Na+/Ca+ exchanger related-protein:->->:1899709..1900545 837 ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagctaaacacctcaacaattcaacaactcaacacctcaacagctcaacaattaaacatctcaacacctcaacacctcaacgccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatgtttatatcccggcggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtttaatgttccgtttaaccgcacgggttatacgtttaaccggattcgtgatccgtttagcctccggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcacctccggaggtgttccgtttagcctcagaggcattccgtttagccggattcgtgttccgtttctcctttttggtgttccgtttaaccggtttcgtgatccgtttcacctaaggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcatctccgggggtgttccgtttagcctcagaggtgatatataatatcataaaggtattccgtatcattccggaggtgatatgcaccatttcggcagcctcccgtatgatgtgcaaaggcccgatcgggaagcgcgcccttctctccctctccctcacgtttgcctgccgaaaaggggagagagagcctta Intra-Species Hit: Count: 22 Min: 1 Max: 837 Len: 837 Subject: tfor_TF1762_TF1763|hypothetical protein:K+-dependent Na+/Ca+ exchanger related-protein|POSITIVE:POSITIVE|[1899709,1900545]|837 HSP 1 e-value: 0.0 bit: 1263.0 Len: 637 Query Start:201 Query End:837 Subject Strand: POSITIVE Subject Start: 201 Subject End: 837 ........................................................................................................................................................................................................gccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatgtttatatcccggcggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtttaatgttccgtttaaccgcacgggttatacgtttaaccggattcgtgatccgtttagcctccggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcacctccggaggtgttccgtttagcctcagaggcattccgtttagccggattcgtgttccgtttctcctttttggtgttccgtttaaccggtttcgtgatccgtttcacctaaggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcatctccgggggtgttccgtttagcctcagaggtgatatataatatcataaaggtattccgtatcattccggaggtgatatgcaccatttcggcagcctcccgtatgatgtgcaaaggcccgatcgggaagcgcgcccttctctccctctccctcacgtttgcctgccgaaaaggggagagagagcctta ........................................................................................................................................................................................................gccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatgtttatatcccggcggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtttaatgttccgtttaaccgcacgggttatacgtttaaccggattcgtgatccgtttagcctccggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcacctccggaggtgttccgtttagcctcagaggcattccgtttagccggattcgtgttccgtttctcctttttggtgttccgtttaaccggtttcgtgatccgtttcacctaaggaggtgttccgtatcacctttttgacgttccgtttcttgtttttaaggtttcgtttcatctccgggggtgttccgtttagcctcagaggtgatatataatatcataaaggtattccgtatcattccggaggtgatatgcaccatttcggcagcctcccgtatgatgtgcaaaggcccgatcgggaagcgcgcccttctctccctctccctcacgtttgcctgccgaaaaggggagagagagcctta HSP 2 e-value: 3.0E-64 bit: 248.0 Len: 125 Query Start:1 Query End:125 Subject Strand: POSITIVE Subject Start: 1 Subject End: 125 ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagcta........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagcta........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF0018_TF0019|hypothetical protein:heat shock protein ClpB|POSITIVE:POSITIVE|[12152,12589]|438 HSP 1 e-value: 2.0E-34 bit: 149.0 Len: 122 Query Start:2 Query End:123 Subject Strand: POSITIVE Subject Start: 29 Subject End: 148 .tgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .tgaattacgtcaggctttcagccctccgctgagggggggcgcc--cttttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggctgttacaacggtcagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-6 bit: 54.0 Len: 35 Query Start:201 Query End:235 Subject Strand: POSITIVE Subject Start: 209 Subject End: 243 ........................................................................................................................................................................................................gccccgaaggggttagctcgcccgaggcccaaggg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................gccccgaaagggttagcccgcccgaggcccaaggg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2438_TF2439|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2616218,2616519]|302 HSP 1 e-value: 1.0E-32 bit: 143.0 Len: 113 Query Start:4 Query End:116 Subject Strand: POSITIVE Subject Start: 111 Subject End: 219 ...aattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ...aattatgtcaggctttcagccctccgctgagggggt----cgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggcttttacagc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2500_TF2501|ABC transporter, ATP-binding protein:DNA mismatch repair protein|POSITIVE:POSITIVE|[2675363,2676419]|1057 HSP 1 e-value: 2.0E-31 bit: 139.0 Len: 122 Query Start:2 Query End:123 Subject Strand: NEGATIVE Subject Start: 197 Subject End: 313 .tgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .tgaattacgtcaggctttcatccctccgccgaggggg-----cgcctgttttcccaacgcttcgcttcgctctgcattgggctgaattaatgcgccctttcagggcttttacaacggtcagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2920_TF2921|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3117231,3118637]|1407 HSP 1 e-value: 7.0E-31 bit: 137.0 Len: 85 Query Start:201 Query End:285 Subject Strand: POSITIVE Subject Start: 995 Subject End: 1079 ........................................................................................................................................................................................................gccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ........................................................................................................................................................................................................gccccgaaggggttagctcgcccgaggcccaagggctgaaagcccggtatatttcagccccatcccgtaaggatggggtatcgat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-30 bit: 135.0 Len: 105 Query Start:11 Query End:115 Subject Strand: POSITIVE Subject Start: 511 Subject End: 611 ..........tcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacag.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ..........tcaggctttcagccctccgccgagggggt----cgccctgtttcccaacgcttcgcttcgctgcacattggactgaattaacgcgccctttcagggctgttacag.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 2.0E-21 bit: 105.0 Len: 113 Query Start:11 Query End:123 Subject Strand: POSITIVE Subject Start: 830 Subject End: 942 ..........tcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........tcaggctttcagccctccgctgagggggttgccctgttttttttccaacgcttcgcttcgctgcgcattgggctgaattaatacgccctttcagggctcttacaacggtcagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2914_TF2915|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3109704,3110561]|858 HSP 1 e-value: 2.0E-28 bit: 129.0 Len: 122 Query Start:2 Query End:123 Subject Strand: POSITIVE Subject Start: 349 Subject End: 461 .tgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .tgaattacgtcaggctttcagccctccgccgaggggggtg----cctgttttcccaacgct-----tcgctgcacattgggctgaattaacgtgccctttcagggcttttacagcggtcagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-6 bit: 54.0 Len: 31 Query Start:201 Query End:231 Subject Strand: POSITIVE Subject Start: 490 Subject End: 520 ........................................................................................................................................................................................................gccccgaaggggttagctcgcccgaggccca.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................................................................................................................................................................gccccgaaggggttagctcgaccgaggccca.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 2.0E-28 bit: 129.0 Len: 123 Query Start:1 Query End:123 Subject Strand: POSITIVE Subject Start: 760 Subject End: 879 ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagcgggcagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttgaattacgtcaggcttacagccctccgccgagatgc---gatgccttttttcccaacgcttcgctgcgctccacattgggctgaattaatgcgccctttcagggctgttacaacggtcagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-13 bit: 79.8 Len: 48 Query Start:313 Query End:360 Subject Strand: POSITIVE Subject Start: 949 Subject End: 996 ........................................................................................................................................................................................................................................................................................................................cctgaattaaattcatttttatttcttctattgcggaatccgggttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................................................................................................................................................................................................................................................................................cctgaattaaattcattcttatttcttctatcgcggaatccgggttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2998_TF2999|surface antigen BspA:conserved hypothetical protein|POSITIVE:POSITIVE|[3215212,3215705]|494 HSP 1 e-value: 3.0E-24 bit: 115.0 Len: 116 Query Start:1 Query End:116 Subject Strand: POSITIVE Subject Start: 199 Subject End: 311 ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacagc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ttgaattatgtcaggctttcagccctccgccgagggggtcgc---cctgttttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctcttacagc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 8.0E-6 bit: 54.0 Len: 51 Query Start:201 Query End:251 Subject Strand: POSITIVE Subject Start: 354 Subject End: 403 ........................................................................................................................................................................................................gccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacata.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................gccccgaaggggttagctcgcatg-ggcacaagggctgaaagcctgacata.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0585_TF0586|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[616824,617452]|629 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 128 Query Start:231 Query End:358 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 306 ......................................................................................................................................................................................................................................aagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatgtttatatcccggcg-gagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................aagggctgaaagccagatatatttcagccccatcccgtaagggtgggggatccatgcccatatcttggttagagggctgaaggcctgaattaaattcattcttattggttctattgcggaatctgggtt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1848_TF1850|conserved hypothetical protein:Na+/H+-exchanging protein|POSITIVE:POSITIVE|[1998005,1998681]|677 HSP 1 e-value: 4.0E-23 bit: 111.0 Len: 108 Query Start:1 Query End:108 Subject Strand: NEGATIVE Subject Start: 78 Subject End: 180 ttgaattacgtcaggctttcagccctccgccgagggggagggacgccttttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggct......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttgaattacgtcaggctttcagccctccgctgagggggtcg-----ctctttccccaacacttcgctgcgctccacattgggctgaattaacgcgccctttcagggct......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2815_TF2816|meso-diaminopimelate D-dehydrogenase:hypothetical protein|POSITIVE:POSITIVE|[3006481,3007064]|584 HSP 1 e-value: 2.0E-22 bit: 109.0 Len: 63 Query Start:50 Query End:112 Subject Strand: POSITIVE Subject Start: 232 Subject End: 294 .................................................ttttcccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggctttta..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................ttttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggctttta..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-16 bit: 89.7 Len: 85 Query Start:201 Query End:285 Subject Strand: POSITIVE Subject Start: 363 Subject End: 447 ........................................................................................................................................................................................................gccccgaaggggttagctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ........................................................................................................................................................................................................gccccgaagagattagcccgcacagggcacaagggctgaaagcccgatatatttcagccccatcccgtaagggtgggatatcgat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF2190_TF2191|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2365707,2366073]|367 HSP 1 e-value: 6.0E-22 bit: 107.0 Len: 62 Query Start:299 Query End:360 Subject Strand: NEGATIVE Subject Start: 128 Subject End: 189 ..........................................................................................................................................................................................................................................................................................................cggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ..........................................................................................................................................................................................................................................................................................................cggagggctgaaggcctgaattaaattcattcttatttcttctattgcgtaatccgggttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 4.0E-17 bit: 91.7 Len: 54 Query Start:231 Query End:284 Subject Strand: NEGATIVE Subject Start: 205 Subject End: 258 ......................................................................................................................................................................................................................................aagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcga......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................aagggctgaaagcccgaattatttcagccccatcccgcaagggtggggtatcga......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1181_TF1183|methylated-DNA--[protein]-cysteine S-methyltransferase:hypothetical protein|POSITIVE:POSITIVE|[1268052,1268530]|479 HSP 1 e-value: 4.0E-20 bit: 101.0 Len: 55 Query Start:302 Query End:356 Subject Strand: NEGATIVE Subject Start: 173 Subject End: 227 .............................................................................................................................................................................................................................................................................................................agggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccggg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................................................................................................................................................................................................................................................................agggctgaaggcctgaattaaattcattcttatttcttctattgcggaatccggg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 3.0E-11 bit: 71.9 Len: 40 Query Start:76 Query End:115 Subject Strand: NEGATIVE Subject Start: 375 Subject End: 414 ...........................................................................cattgggctgaattaacgcgccctttcagggcttttacag.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ...........................................................................cattgggctgaattaatgcgccctttcagggcttttacag.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF3003_TF3004|hypothetical protein:phosphoribosylformylglycinamidine (FGAM) synthase|POSITIVE:POSITIVE|[3220690,3220958]|269 HSP 1 e-value: 2.0E-19 bit: 99.6 Len: 62 Query Start:299 Query End:360 Subject Strand: POSITIVE Subject Start: 112 Subject End: 173 ..........................................................................................................................................................................................................................................................................................................cggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ..........................................................................................................................................................................................................................................................................................................cggagggctgaaggcctgaattaaattcattcttatttcttctattgcgtaatctgggttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 4.0E-17 bit: 91.7 Len: 54 Query Start:231 Query End:284 Subject Strand: POSITIVE Subject Start: 43 Subject End: 96 ......................................................................................................................................................................................................................................aagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcga......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................aagggctgaaagcccgaattatttcagccccatcccgcaagggtggggtatcga......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1585_TF1586|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1690671,1691110]|440 HSP 1 e-value: 2.0E-19 bit: 99.6 Len: 70 Query Start:216 Query End:285 Subject Strand: POSITIVE Subject Start: 183 Subject End: 252 .......................................................................................................................................................................................................................gctcgcccgaggcccaagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .......................................................................................................................................................................................................................gctcgcacggggcacaagggctgcaagcccgatatatttcagccccatcccgcaagggtggggtatcgat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 5.0E-7 bit: 58.0 Len: 33 Query Start:76 Query End:108 Subject Strand: POSITIVE Subject Start: 59 Subject End: 91 ...........................................................................cattgggctgaattaacgcgccctttcagggct......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...........................................................................cattgggctgaattaacacgccctttcagggct......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0677_TF0678|ATP-binding protein, Mrp/Nbp35 family, involved in chromosome partitioning:hypothetical protein|POSITIVE:POSITIVE|[721043,721242]|200 HSP 1 e-value: 2.0E-19 bit: 99.6 Len: 62 Query Start:299 Query End:360 Subject Strand: NEGATIVE Subject Start: 6 Subject End: 67 ..........................................................................................................................................................................................................................................................................................................cggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ..........................................................................................................................................................................................................................................................................................................cggagggctgaaggcctgaattaaattcattcttatttcttctattgcgtaatctgggttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 9.0E-15 bit: 83.8 Len: 54 Query Start:231 Query End:284 Subject Strand: NEGATIVE Subject Start: 83 Subject End: 136 ......................................................................................................................................................................................................................................aagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcga......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................aagggctgaaagcccgaattatttcagccctatcccgcaagggtggggtatcga......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2047_TF2048|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2210359,2210782]|424 HSP 1 e-value: 2.0E-18 bit: 95.6 Len: 60 Query Start:299 Query End:358 Subject Strand: POSITIVE Subject Start: 334 Subject End: 393 ..........................................................................................................................................................................................................................................................................................................cggagggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................cggagggctgaaagcctgaattaaattcattcttatttcttctattgcggaatctgggtt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 9.0E-15 bit: 83.8 Len: 50 Query Start:232 Query End:281 Subject Strand: POSITIVE Subject Start: 264 Subject End: 313 .......................................................................................................................................................................................................................................agggctgaaagcccgacatatttcagccccatcccgcaagggtggggtat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .......................................................................................................................................................................................................................................agggctgaaagcccgaattatttcagccccatcccgcaagggtggggtat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF0029_TF0030|hypothetical protein:N-acetylneuraminate lyase|POSITIVE:POSITIVE|[25123,25909]|787 HSP 1 e-value: 2.0E-15 bit: 85.7 Len: 59 Query Start:302 Query End:360 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 68 .............................................................................................................................................................................................................................................................................................................agggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................................................................................................................................................................................................................................................................agggctgaaggcctgaattaaattcattcttattggttctattgcggaatctgggttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-9 bit: 65.9 Len: 49 Query Start:230 Query End:278 Subject Strand: NEGATIVE Subject Start: 213 Subject End: 261 .....................................................................................................................................................................................................................................caagggctgaaagcccgacatatttcagccccatcccgcaagggtgggg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................caagggctggaagcccgaattatttcagccccatcccgtaagggtgggg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1473_TF1474|hypothetical protein:6- phosphogluconolactonase|POSITIVE:POSITIVE|[1567027, 1567481]|455 HSP 1 e-value: 9.0E-15 bit: 83.8 Len: 66 Query Start:302 Query End:367 Subject Strand: POSITIVE Subject Start: 328 Subject End: 393 .............................................................................................................................................................................................................................................................................................................agggctgaaggcctgaattaaattcatttttatttcttctattgcggaatccgggtttaatgttcc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................agggctgaaggcctgaattaaattcatccttatttgttctattgccgaatctgggtttaattttcc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-12 bit: 75.8 Len: 54 Query Start:231 Query End:284 Subject Strand: POSITIVE Subject Start: 256 Subject End: 309 ......................................................................................................................................................................................................................................aagggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcga......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................aagggctgaaagcccgaattatttcagccccatcccgtaagggtgggggatcga......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0358_TF0359|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[376365,377082]|718 HSP 1 e-value: 2.0E-12 bit: 75.8 Len: 62 Query Start:54 Query End:115 Subject Strand: POSITIVE Subject Start: 359 Subject End: 420 .....................................................cccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacag.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .....................................................cccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacag.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 9.0E-12 bit: 73.8 Len: 49 Query Start:232 Query End:280 Subject Strand: POSITIVE Subject Start: 529 Subject End: 577 .......................................................................................................................................................................................................................................agggctgaaagcccgacatatttcagccccatcccgcaagggtggggta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .......................................................................................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggggta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2477_TF2478|phosphatase:hypothetical protein|POSITIVE:POSITIVE|[2655026,2655514]|489 HSP 1 e-value: 5.0E-7 bit: 58.0 Len: 53 Query Start:234 Query End:286 Subject Strand: NEGATIVE Subject Start: 228 Subject End: 280 .........................................................................................................................................................................................................................................ggctgaaagcccgacatatttcagccccatcccgcaagggtggggtatcgatg....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................ggctgaaagtccgatctatttcagccccatcccataaggttggggtatcgatg....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-7 bit: 58.0 Len: 45 Query Start:64 Query End:108 Subject Strand: NEGATIVE Subject Start: 362 Subject End: 406 ...............................................................cgcttcgctgcacattgggctgaattaacgcgccctttcagggct......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................................cgcttcgctacgcattgggctgaattaatacgccctttcagggct......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0827_TF0828|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[886980,887229]|250 HSP 1 e-value: 5.0E-7 bit: 58.0 Len: 41 Query Start:76 Query End:116 Subject Strand: NEGATIVE Subject Start: 135 Subject End: 175 ...........................................................................cattgggctgaattaacgcgccctttcagggcttttacagc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ...........................................................................cattgggctgaattattacgccctttcagggcttttacagc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:1 Query End:28 Subject Strand: NEGATIVE Subject Start: 209 Subject End: 236 ttgaattacgtcaggctttcagccctcc......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttgaattacgtcaggctttcagccctcc......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUGAAUUACGUCAGGCUUUCAGCCCUCCGCCGAGGGGGAGGGACGCCUUUUUUCCCAACGCUUCGCUUCGCUGCACAUUGGGCUGAAUUAACGCGCCCUUUCAGGGCUUUUACAGCGGGCAGCUAAACACCUCAACAAUUCAACAACUCAACACCUCAACAGCUCAACAAUUAAACAUCUCAACACCUCAACACCUCAACGCCCCGAAGGGGUUAGCUCGCCCGAGGCCCAAGGGCUGAAAGCCCGACAUAUUUCAGCCCCAUCCCGCAAGGGUGGGGUAUCGAUGUUUAUAUCCCGGCGGAGGGCUGAAGGCCUGAAUUAAAUUCAUUUUUAUUUCUUCUAUUGCGGAAUCCGGGUUUAAUGUUCCGUUUAACCGCACGGGUUAUACGUUUAACCGGAUUCGUGAUCCGUUUAGCCUCCGGAGGUGUUCCGUAUCACCUUUUUGACGUUCCGUUUCUUGUUUUUAAGGUUUCGUUUCACCUCCGGAGGUGUUCCGUUUAGCCUCAGAGGCAUUCCGUUUAGCCGGAUUCGUGUUCCGUUUCUCCUUUUUGGUGUUCCGUUUAACCGGUUUCGUGAUCCGUUUCACCUAAGGAGGUGUUCCGUAUCACCUUUUUGACGUUCCGUUUCUUGUUUUUAAGGUUUCGUUUCAUCUCCGGGGGUGUUCCGUUUAGCCUCAGAGGUGAUAUAUAAUAUCAUAAAGGUAUUCCGUAUCAUUCCGGAGGUGAUAUGCACCAUUUCGGCAGCCUCCCGUAUGAUGUGCAAAGGCCCGAUCGGGAAGCGCGCCCUUCUCUCCCUCUCCCUCACGUUUGCCUGCCGAAAAGGGGAGAGAGAGCCUUA .((((((...((((((((((((((((((((((.(((..((((.(((..(((..(((((.((..((...))..))...)))))..))).....)))))))..).((((((((....((((((((((....................................(.....)................................(((((...)))))))))).))))).((((....))))))))))))...(((((...((((((.(((....)))))))))...)))))......))))))))))))))))))))))))....)))))).......(((..(((..(((((((((.((((.((((...)))).))))....((((((.(((......((((((...))))))....(((((((((((((...((....(((((...((((..........))))...)))))..))...)))))))))))))....))).))))))....)).))))))).)))..)))...(.((((..((((((((((((((((((......))).(((..(((((.......(((((..(((((((...((....(((((...((((..........))))...)))))..))...)))))))..)))))...(((...(((((.(..(((((((..((((((.....))))))..)))))))..).)))))...))).........(((.((.(((((.....((.((....)).))..))))).))..)))................)))))...))).)))))))))))))))..)))))... (-305.70) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGGCUCUCUCUCCCCUUUUCGGCAGGCAAACGUGAGGGAGAGGGAGAGAAGGGCGCGCUUCCCGAUCGGGCCUUUGCACAUCAUACGGGAGGCUGCCGAAAUGGUGCAUAUCACCUCCGGAAUGAUACGGAAUACCUUUAUGAUAUUAUAUAUCACCUCUGAGGCUAAACGGAACACCCCCGGAGAUGAAACGAAACCUUAAAAACAAGAAACGGAACGUCAAAAAGGUGAUACGGAACACCUCCUUAGGUGAAACGGAUCACGAAACCGGUUAAACGGAACACCAAAAAGGAGAAACGGAACACGAAUCCGGCUAAACGGAAUGCCUCUGAGGCUAAACGGAACACCUCCGGAGGUGAAACGAAACCUUAAAAACAAGAAACGGAACGUCAAAAAGGUGAUACGGAACACCUCCGGAGGCUAAACGGAUCACGAAUCCGGUUAAACGUAUAACCCGUGCGGUUAAACGGAACAUUAAACCCGGAUUCCGCAAUAGAAGAAAUAAAAAUGAAUUUAAUUCAGGCCUUCAGCCCUCCGCCGGGAUAUAAACAUCGAUACCCCACCCUUGCGGGAUGGGGCUGAAAUAUGUCGGGCUUUCAGCCCUUGGGCCUCGGGCGAGCUAACCCCUUCGGGGCGUUGAGGUGUUGAGGUGUUGAGAUGUUUAAUUGUUGAGCUGUUGAGGUGUUGAGUUGUUGAAUUGUUGAGGUGUUUAGCUGCCCGCUGUAAAAGCCCUGAAAGGGCGCGUUAAUUCAGCCCAAUGUGCAGCGAAGCGAAGCGUUGGGAAAAAAGGCGUCCCUCCCCCUCGGCGGAGGGCUGAAAGCCUGACGUAAUUCAA .....((((((((((((((..((.........)).))))).)))))))))...((((.((((((((((..(((....)).)...)).)))))))))))).....((((.....))))((((........))))....((((.((((...........((((.(((((....((...((((......((((...((....(((......)))...))...)))).....))))...((((....((((((.((((...((.....))...(((......)))..))))...))))))...((.....))..))))......))....))))).)))).....((.....((((((((((((...((..(((((....((............))....)))))....))...)))))))))))).....)).)))).((((((((((((.(((.(((((.....))))).))).....))))..)))))))).......)))).........((((((....((((((.(((((((((((((((((...((((((((....((((((((....))).)))))((((......))))....((((((((..((((((((.((.......(((....)))))))))))).)..))).))))))))))))).(((((..(((((...((.(((((((((.((..(((..(.((.((......)))).)..)))..((((.....)))).)).))))))))))).....)))))..)))))......((((.........)))).....))))))))))))))))).))))))...)))))). (-300.91) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 998 280 231 219 170 tfor:TF0822|5end_hypothetical_protein_880487..880717_POSITIVE 998 280 231 219 170 tfor:TF0821|5end_hypothetical_protein_879879..880109_POSITIVE 922 280 231 205 156 tfor:TF0678|5end_hypothetical_protein_721103..721333_POSITIVE 896 99 51 103 54 tfor:TF1716|5end_hypothetical_protein_1837442..1837672_POSITIVE 842 278 231 48 2 tfor:TF2840|5end_hypothetical_protein_3031060..3031290_POSITIVE 840 110 61 125 76 tfor:TF0538|5end_hypothetical_protein_566891..567121_POSITIVE 840 110 61 118 69 tfor:TF0539|5end_hypothetical_protein_566884..567114_POSITIVE 834 110 61 178 130 tfor:TF2517|5end_hypothetical_protein_2695089..2695319_POSITIVE 767 108 64 219 175 tfor:TF2478|5end_hypothetical_protein_2655375..2655605_POSITIVE 760 280 233 56 7 tfor:TF2547|5end_hypothetical_protein_2730664..2730894_POSITIVE 752 120 76 205 157 tfor:TF2824|5end_nucleoside-transporting_protein_nupG_3014701..3014931_POSITIVE 736 100 52 202 143 tfor:TF1406|5end_transposase_1481758..1481988_POSITIVE 722 110 64 191 150 tfor:TF1183|5end_hypothetical_protein_1268391..1268621_POSITIVE 718 350 301 67 18 tfor:TF0820|5end_hypothetical_protein_879656..879886_POSITIVE 699 120 76 231 184 tfor:TF1184|5end_hypothetical_protein_1269004..1269234_POSITIVE 675 69 21 68 23 tfor:TF3107|5end_hypothetical_protein_3338459..3338689_POSITIVE 669 110 64 195 154 tfor:TF1186|5end_hypothetical_protein_1269568..1269798_POSITIVE 669 110 64 201 160 tfor:TF0828|5end_hypothetical_protein_887090..887320_POSITIVE 663 110 61 125 76 tfor:TF0534|5end_hypothetical_protein_559509..559739_POSITIVE 659 90 41 98 46 tfor:TF0679|5end_hypothetical_protein_721155..721385_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 797 108 61 82 35 tfor:TF2840|3end_hypothetical_protein_3031289..3031439_POSITIVE 769 347 301 72 26 tfor:TF0677|3end_ATP-binding_protein,_Mrp/Nbp35_family,_involved_in_chromosome_partitioning_720982..721132_POSITIVE 718 350 301 60 11 tfor:TF0819|3end_phosphoglycerate_mutase_879729..879879_POSITIVE 699 120 76 85 38 tfor:TF1182|3end_hypothetical_protein_1268938..1269088_POSITIVE 675 69 21 137 92 tfor:TF3106|3end_hypothetical_protein_3338608..3338758_POSITIVE 672 350 301 71 16 tfor:TF0029|3end_hypothetical_protein_25062..25212_POSITIVE 669 110 64 110 69 tfor:TF1185|3end_hypothetical_protein_1269563..1269713_POSITIVE 665 66 21 114 72 tfor:TF2547|3end_hypothetical_protein_2730947..2731097_POSITIVE 663 110 61 55 6 tfor:TF0533|3end_hypothetical_protein_559519..559669_POSITIVE 651 108 64 61 22 tfor:TF0820|3end_hypothetical_protein_879942..880092_POSITIVE 600 210 161 72 15 tfor:TF2839|3end_ATP-dependent_exodeoxyribonuclease_3031035..3031185_POSITIVE 524 50 2 137 78 tfor:TF1274|3end_hypothetical_protein_1357895..1358045_POSITIVE 516 76 42 151 120 tfor:TF1405|3end_conserved_hypothetical_protein_1481819..1481969_POSITIVE 510 327 293 89 52 tfor:TF1762|3end_hypothetical_protein_1899648..1899798_POSITIVE 509 319 274 85 41 tfor:TF1585|3end_hypothetical_protein_1690610..1690760_POSITIVE 509 319 274 78 34 tfor:TF1584|3end_hypothetical_protein_1690603..1690753_POSITIVE 486 319 296 73 50 tfor:TF2922|3end_surface_antigen_BspA_3121538..3121688_POSITIVE 486 39 6 148 117 tfor:TF0678|3end_hypothetical_protein_721335..721485_POSITIVE 477 326 290 151 99 tfor:TF0448|3end_hypothetical_protein_467911..468061_POSITIVE 475 239 192 143 89 tfor:TF1186|3end_hypothetical_protein_1269815..1269965_POSITIVE