Origin IGS: tagatcaagctgaactttccattgaagatcttctatggagagggcgccaatgccatacagattcagatttggaccacactggttgccaacctccttttgatggttatccagcgtaagctgacacgcgcgtagagtttctcaggacttgccacatgatcgtatgtactgatgtactatcatatctaacatctcaagctttttttgtacaatgttatagacaacaacagccctaaggtaaccccaacagatagaacaaagagtgatataaatattctcatctttggtatcccatatacagatagtactggaattgcgatataacttgagattggaaggtaggataatatttgagtcatttcagtatcagggttgcctgcaacatacatcccaaaataaatagtcaagataattagcatatttcctaatggagtcaaaaatctacctgctttgctacttgacaaagttgcgataatagagaatatagctccatttaaaagaatacccaaaaagaaaaagagagggaattcaatgccaacagtgttatggatgtttatctgaataaaagacataagtgtatcgattggggacacactagaatcatagtgcccaatatagtttgcatcataccaaatcagaaccaagaagtatcctgcataagctataatccatatcgcaacctgtaacaatgatgcaatactcattcccaaaatcttgcctaaaactaaatactttgggtctatatatatggatagaacttctgctaatttattacttttttcctctgccatactccgaagtaggttgttgttgtataagataagggtcagattgcttatatccagctgctaaagacaggagagtagatagttcatctagttggatattatgagcatgaaaatccctacgactgcaacgtttttccacaacatcttgaaaagaatccgcaatctttattggaggagggagtctgaccaggagaattgaccgatatatagaaagccccacattgtgctgaagatttacgatatgctcattatagtgcctcagatgatcagccttagaagaaaacaaggctttattatttctggaagagatatgatattcaatatctaatggtagaattgatttaaacataagcta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagcttatgtttaaatcaattctaccattagatattgaatatcatatctcttccagaaataataaagccttgttttcttctaaggctgatcatctgaggcactataatgagcatatcgtaaatcttcagcacaatgtggggctttctatatatcggtcaattctcctggtcagactccctcctccaataaagattgcggattcttttcaagatgttgtggaaaaacgttgcagtcgtagggattttcatgctcataatatccaactagatgaactatctactctcctgtctttagcagctggatataagcaatctgacccttatcttatacaacaacaacctacttcggagtatggcagaggaaaaaagtaataaattagcagaagttctatccatatatatagacccaaagtatttagttttaggcaagattttgggaatgagtattgcatcattgttacaggttgcgatatggattatagcttatgcaggatacttcttggttctgatttggtatgatgcaaactatattgggcactatgattctagtgtgtccccaatcgatacacttatgtcttttattcagataaacatccataacactgttggcattgaattccctctctttttctttttgggtattcttttaaatggagctatattctctattatcgcaactttgtcaagtagcaaagcaggtagatttttgactccattaggaaatatgctaattatcttgactatttattttgggatgtatgttgcaggcaaccctgatactgaaatgactcaaatattatcctaccttccaatctcaagttatatcgcaattccagtactatctgtatatgggataccaaagatgagaatatttatatcactctttgttctatctgttggggttaccttagggctgttgttgtctataacattgtacaaaaaaagcttgagatgttagatatgatagtacatcagtacatacgatcatgtggcaagtcctgagaaactctacgcgcgtgtcagcttacgctggataaccatcaaaaggaggttggcaaccagtgtggtccaaatctgaatctgtatggcattggcgccctctccatagaagatcttcaatggaaagttcagcttgatcta Mask Tandem Repeat Region ================================================ tagatcaagctgaactttccattgaagatcttctatggagagggcgccaatgccatacagattcagatttggaccacactggttgccaacctccttttgatggttatccagcgtaagctgacacgcgcgtagagtttctcaggacttgccacatgatcgtatgtactgatgtactatcatatctaacatctcaagctttttttgtacaatgttatagacaacaacagccctaaggtaaccccaacagatagaacaaagagtgatataaatattctcatctttggtatcccatatacagatagtactggaattgcgatataacttgagattggaaggtaggataatatttgagtcatttcagtatcagggttgcctgcaacatacatcccaaaataaatagtcaagataattagcatatttcctaatggagtcaaaaatctacctgctttgctacttgacaaagttgcgataatagagaatatagctccatttaaaagaatacccaaaaagaaaaagagagggaattcaatgccaacagtgttatggatgtttatctgaataaaagacataagtgtatcgattggggacacactagaatcatagtgcccaatatagtttgcatcataccaaatcagaaccaagaagtatcctgcataagctataatccatatcgcaacctgtaacaatgatgcaatactcattcccaaaatcttgcctaaaactaaatactttgggtctatatatatggatagaacttctgctaatttattacttttttcctctgccatactccgaagtaggttgttgttgtataagataagggtcagattgcttatatccagctgctaaagacaggagagtagatagttcatctagttggatattatgagcatgaaaatccctacgactgcaacgtttttccacaacatcttgaaaagaatccgcaatctttattggaggagggagtctgaccaggagaattgaccgatatatagaaagccccacattgtgctgaagatttacgatatgctcattatagtgcctcagatgatcagccttagaagaaaacaaggctttattatttctggaagagatatgatattcaatatctaatggtagaattgatttaaacataagcta Find is-nt database================================================ Query_seq: TF1747:TF1748|TF1747:TF1748:hypothetical protein:conserved hypothetical protein:->->:1881558..1882697 1140 tagatcaagctgaactttccattgaagatcttctatggagagggcgccaatgccatacagattcagatttggaccacactggttgccaacctccttttgatggttatccagcgtaagctgacacgcgcgtagagtttctcaggacttgccacatgatcgtatgtactgatgtactatcatatctaacatctcaagctttttttgtacaatgttatagacaacaacagccctaaggtaaccccaacagatagaacaaagagtgatataaatattctcatctttggtatcccatatacagatagtactggaattgcgatataacttgagattggaaggtaggataatatttgagtcatttcagtatcagggttgcctgcaacatacatcccaaaataaatagtcaagataattagcatatttcctaatggagtcaaaaatctacctgctttgctacttgacaaagttgcgataatagagaatatagctccatttaaaagaatacccaaaaagaaaaagagagggaattcaatgccaacagtgttatggatgtttatctgaataaaagacataagtgtatcgattggggacacactagaatcatagtgcccaatatagtttgcatcataccaaatcagaaccaagaagtatcctgcataagctataatccatatcgcaacctgtaacaatgatgcaatactcattcccaaaatcttgcctaaaactaaatactttgggtctatatatatggatagaacttctgctaatttattacttttttcctctgccatactccgaagtaggttgttgttgtataagataagggtcagattgcttatatccagctgctaaagacaggagagtagatagttcatctagttggatattatgagcatgaaaatccctacgactgcaacgtttttccacaacatcttgaaaagaatccgcaatctttattggaggagggagtctgaccaggagaattgaccgatatatagaaagccccacattgtgctgaagatttacgatatgctcattatagtgcctcagatgatcagccttagaagaaaacaaggctttattatttctggaagagatatgatattcaatatctaatggtagaattgatttaaacataagcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1747:TF1748|TF1747:TF1748:hypothetical protein:conserved hypothetical protein:->->:1881558..1882697 1140 tagatcaagctgaactttccattgaagatcttctatggagagggcgccaatgccatacagattcagatttggaccacactggttgccaacctccttttgatggttatccagcgtaagctgacacgcgcgtagagtttctcaggacttgccacatgatcgtatgtactgatgtactatcatatctaacatctcaagctttttttgtacaatgttatagacaacaacagccctaaggtaaccccaacagatagaacaaagagtgatataaatattctcatctttggtatcccatatacagatagtactggaattgcgatataacttgagattggaaggtaggataatatttgagtcatttcagtatcagggttgcctgcaacatacatcccaaaataaatagtcaagataattagcatatttcctaatggagtcaaaaatctacctgctttgctacttgacaaagttgcgataatagagaatatagctccatttaaaagaatacccaaaaagaaaaagagagggaattcaatgccaacagtgttatggatgtttatctgaataaaagacataagtgtatcgattggggacacactagaatcatagtgcccaatatagtttgcatcataccaaatcagaaccaagaagtatcctgcataagctataatccatatcgcaacctgtaacaatgatgcaatactcattcccaaaatcttgcctaaaactaaatactttgggtctatatatatggatagaacttctgctaatttattacttttttcctctgccatactccgaagtaggttgttgttgtataagataagggtcagattgcttatatccagctgctaaagacaggagagtagatagttcatctagttggatattatgagcatgaaaatccctacgactgcaacgtttttccacaacatcttgaaaagaatccgcaatctttattggaggagggagtctgaccaggagaattgaccgatatatagaaagccccacattgtgctgaagatttacgatatgctcattatagtgcctcagatgatcagccttagaagaaaacaaggctttattatttctggaagagatatgatattcaatatctaatggtagaattgatttaaacataagcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1747:TF1748|TF1747:TF1748:hypothetical protein:conserved hypothetical protein:->->:1881558..1882697 1140 tagatcaagctgaactttccattgaagatcttctatggagagggcgccaatgccatacagattcagatttggaccacactggttgccaacctccttttgatggttatccagcgtaagctgacacgcgcgtagagtttctcaggacttgccacatgatcgtatgtactgatgtactatcatatctaacatctcaagctttttttgtacaatgttatagacaacaacagccctaaggtaaccccaacagatagaacaaagagtgatataaatattctcatctttggtatcccatatacagatagtactggaattgcgatataacttgagattggaaggtaggataatatttgagtcatttcagtatcagggttgcctgcaacatacatcccaaaataaatagtcaagataattagcatatttcctaatggagtcaaaaatctacctgctttgctacttgacaaagttgcgataatagagaatatagctccatttaaaagaatacccaaaaagaaaaagagagggaattcaatgccaacagtgttatggatgtttatctgaataaaagacataagtgtatcgattggggacacactagaatcatagtgcccaatatagtttgcatcataccaaatcagaaccaagaagtatcctgcataagctataatccatatcgcaacctgtaacaatgatgcaatactcattcccaaaatcttgcctaaaactaaatactttgggtctatatatatggatagaacttctgctaatttattacttttttcctctgccatactccgaagtaggttgttgttgtataagataagggtcagattgcttatatccagctgctaaagacaggagagtagatagttcatctagttggatattatgagcatgaaaatccctacgactgcaacgtttttccacaacatcttgaaaagaatccgcaatctttattggaggagggagtctgaccaggagaattgaccgatatatagaaagccccacattgtgctgaagatttacgatatgctcattatagtgcctcagatgatcagccttagaagaaaacaaggctttattatttctggaagagatatgatattcaatatctaatggtagaattgatttaaacataagcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 16 Min: 264 Max: 794 Len: 531 Subject: UniRef90_A3XGK9 Cluster: ABC transporter, permease protein, putative; n=1; Leeuwenhoekiella blandensis MED217|Rep: ABC transporter, permease protein, putative - Leeuwenhoekiella blandensis MED217 HSP 1 e-value: 5.0E-11 bit: 71.6 Len: 513 Query Start:282 Query End:794 Subject Strand: null Subject Start: 201 Subject End: 381 ......................................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G H Y D S S V S P I D T L - - - - M S F I Q I N I H N T V G I E F P L F F F L - - - - G I L L N G A I F S I I - - A T L S S S K A G R F L T P L G N M L I I L T I Y F G M Y - V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I P .......................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... R S V I E E K T N R I I E V I I S S V K P F K L M M G K I M G T T L A G I T Q F M I W L L I G G G L L T F L S L Y L G L E G G A P N A A V G N M A T T D L D K I E L I L L D V L N L P L L K L A C F F L I Y F I G G Y F L Y S S I Y A A I G A A V D S E T D T Q Q F M L P I - I M P L M L A I Y V G F F A V I E N P D G S I A T I F S M I P L T S P I V M L M R I P F G V P .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q26AZ6 Cluster: Putative ABC-type transporter permease; n=1; Flavobacteria bacterium BBFL7|Rep: Putative ABC-type transporter permease - Flavobacteria bacterium BBFL7 HSP 1 e-value: 2.0E-10 bit: 69.3 Len: 513 Query Start:282 Query End:794 Subject Strand: null Subject Start: 200 Subject End: 377 ......................................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V - - - L I W Y D A N Y I G H Y D S S V S P I D T L M S F I Q I N I H N T V G I E - - - - - - - F P L F F F L G I L L N G A I F S I I - - A T L S S S K A G R F L T P L G N M L I I L T I Y F G M Y - V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I P .......................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... R S V I E E K T N R I I E I I I S S V K P I Y L M I G K I T G T S L A G I T Q F I I W V I L G G I L F T I A G T F L G P D A V Q S P G N D M A M S Q L E N - M D K M Q L I V N D I M Q L P L L K L V I C F F I Y F I G G Y F L Y A A I Y T A I G A A V D N E T D T Q Q F M L P V - I L P L I L S I Y V G F F S V M D N P H G T V A V I F S Y I P L T S - - - - P I V M L M R I P .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A2TWC9 Cluster: ABC transporter, permease protein, putative; n=1; Dokdonia donghaensis MED134|Rep: ABC transporter, permease protein, putative - Dokdonia donghaensis MED134 HSP 1 e-value: 5.0E-10 bit: 68.2 Len: 531 Query Start:264 Query End:794 Subject Strand: null Subject Start: 178 Subject End: 369 ....................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G H Y D S S V S P - - - - - - - - - - - - - - - I D T L M S F I Q I N I H N T V G I E F P L F F F L G I L L N G A I F S I I - - A T L S S S K A G R F L T P L G N M L I I L T I Y F G M Y - V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I P K M R I F I .......................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................... R S V I E E K T N R I I E V I I S S V K P F Q L M L G K I L G T T L A G I T Q F A I W V L V - G G V L L V V L T A V F G V D P S A A T S V N P A A S Q A Q E I A Q D P N M M I E L L Q E I Q K L P L L Q L V G - G F F I Y F I G G Y F L Y S S I Y A A I G A A V D N E T D T Q Q F M L P I - I M P L M L A I Y V G F F A V I D N P H G T V A T I F S I I P L T S P I V M L M R I P F E V P L W Q I I V .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A3J0Q9 Cluster: ABC transporter, permease protein, putative; n=1; Flavobacteria bacterium BAL38|Rep: ABC transporter, permease protein, putative - Flavobacteria bacterium BAL38 HSP 1 e-value: 9.0E-10 bit: 67.4 Len: 513 Query Start:282 Query End:794 Subject Strand: null Subject Start: 202 Subject End: 384 ......................................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G H Y D S S V S P - - - - - - - - - - I D T L M S F I Q I N I H N - - - - T V G I E F P L F F F L G I L L N G A I F S I I - - A T L S S S K A G R F L T P L G N M L I I L T I Y F G - M Y V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I P .......................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... R S V I E E K T N R I I E I I I S S V K P F K L M M G K I I G T S L A G I L Q F L I W I V L G G - - - - A I I F G A S F F M G G N Q E T V A A S Q I T A E Q A E V A T N F M S Q I Q L Y L N E I P V A S I L V S F V I F F I G G Y F L Y S S F Y A A I G A A V D S E T D S Q Q F L M P I - I M P L M L A V Y V G F L T V I N D P H G T V A V V F S L I P L T S P I V M L M R I P F G V P .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q3Z870 Cluster: Sodium extrusion protein NatB, putative; n=1; Dehalococcoides ethenogenes 195|Rep: Sodium extrusion protein NatB, putative - Dehalococcoides ethenogenes (strain 195) HSP 1 e-value: 3.0E-9 bit: 65.9 Len: 531 Query Start:264 Query End:794 Subject Strand: null Subject Start: 212 Subject End: 373 ....................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G H Y D S S V S - P I D T L M S F I Q I N I H N T V G I E F P L F F F L G I L L N G A I F S I I A T L S S S - K A G R F L T P L G N M L I I L T I Y F G M Y V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I P K M R I F I .......................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................... Q G L S E E K E N R I M E V L L S S V T T R E L M T G K I I G L G L A G L I Q V A F W L V C A W G - - - - L V K F A T S T F G D I L G A L S I P A D M I I V C L - - - - - - - - - - - - - V F F I L G Y F L Y A I M M A A I G A V T S N V R D G Q Q L S V I V T M S A A F P F Y I M P F I L D G G D N L L N Q I L S L F P L T S P L T I I M R M G I G I P V W E I V L .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A3I2A3 Cluster: ABC transporter, permease protein, putative; n=1; Algoriphagus sp. PR1|Rep: ABC transporter, permease protein, putative - Algoriphagus sp. PR1 HSP 1 e-value: 3.0E-9 bit: 65.9 Len: 513 Query Start:282 Query End:794 Subject Strand: null Subject Start: 201 Subject End: 386 ......................................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G H Y D S - - - - - - - - - - S V S P I D T L M S F I Q I N I H N T V G I E F P - - - - - - L F F F L - G I L L N G A I F S I I - - A T L S S S K A G R F L T P L G N M L I I L T I Y F G M Y V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I P .......................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... Q G V I E E K S S R I V E I L V S S L K P F Q L M L G K I V G I G A V G L T Q F L I W V A L I G T L S T V V M G Y L G M Q M P Q Q T A M E L A N P E L A G S I P P T S D F A E I M Q V - - - - I S G I D F V G L V L C F L F Y F L G G Y L L Y G A L F A A I G S A V E A P S E A Q Q F M F P V T I P L I A A Y M G L F V F V L N D P N S S A S F W L S V V P L T S P I A M M G R V S Y G V P .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A0LYP5 Cluster: ABC-type transporter permease protein; n=1; Gramella forsetii KT0803|Rep: ABC-type transporter permease protein - Gramella forsetii (strain KT0803) HSP 1 e-value: 5.0E-9 bit: 65.1 Len: 531 Query Start:264 Query End:794 Subject Strand: null Subject Start: 203 Subject End: 390 ....................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G H Y D S S V - S P - - - - - - - - - - - - I D T L M S F I Q I N I H N T V G I E F P L F F F L G I L L N G A I F S I I - - A T L S S S K A G R F L T P L G N M L I I L T I Y F G M Y - V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I P K M R I F I .......................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................... R S V I E E K T N R I I E I I V S S V K P F Q L L L G K V L G T S L A G I T Q F T V W V I L G T - - - - V L L L G V S S F M G I D P T A V Q S P A S V A I E N A A R P E I N Q L V V D I L K L P Y A S L L A F F V I Y F I G G Y F L Y S A I Y A A I G A A V D S E T D T Q Q F M F P I - I L P L I L G I Y V G F F S V V E N P H G T V S T I F S M V P L T S P I V M L M R I P F G V P W W E L V I .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q11XU1 Cluster: ABC-type Na+ efflux pump, permease component; n=1; Cytophaga hutchinsonii ATCC 33406|Rep: ABC-type Na+ efflux pump, permease component - Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) HSP 1 e-value: 6.0E-9 bit: 64.7 Len: 525 Query Start:270 Query End:794 Subject Strand: null Subject Start: 189 Subject End: 378 ............................................................................................................................................................................................................................................................................. R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G H Y - D S S V S P I D T L - - - - - - - - - - - - - - - - M S F I Q I N I H N T V G I E F P L F F F L G I L L N G A I F S I I A T L S S S K A G - - R F L T P L G N M L I I L T I Y F G M Y V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I P K M R I .......................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................. K G I V D E K V N R V V E V I L C S V K P F N W M M G K I L G I A A V C L T Q F G F W A L I Y V L V G L K F Q Q R Y G N A L T Q F T D K N M N - - D T L H V S K D A W Q A L E W N V F A E S F A S L P L L Q - I G V C F F A F F I L G Y L L Y A S L F A A I G A M T D N E T D T Q Q F T F P I T A P L F I - T F L F A G F I I S D P D A Q L S V V L S Y F P L T S P V A M M L R I P F G V S N W E I .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q1XJX9 Cluster: ABC transporter, permease protein, putative precursor; n=1; Flavobacterium johnsoniae UW101|Rep: ABC transporter, permease protein, putative precursor - Flavobacterium johnsoniae UW101 HSP 1 e-value: 8.0E-9 bit: 64.3 Len: 531 Query Start:264 Query End:794 Subject Strand: null Subject Start: 206 Subject End: 396 ....................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G - - - - - - - - - - - - - H Y D S S V S P I D T L M S F I Q I N I H N T V G I E F P L F F F L G I L L N G A I F S I I - - A T L S S S K A G R F L T P L G N M L I I L T I Y F G M Y - V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I P K M R I F I .......................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................... R S V I E E K T N R I I E I I I S S V K P F Q L M I G K I V G T S L A G I L Q F M I W A I I G L G L M F A A S A F F G V N V G P T A R I S P E M M Q S A Q H E F S G S A Q M Y I A E L W N L P I A S I I - I G F V I Y F I G G Y F L Y S S F Y A A I G A A V D N Q T D S Q Q F L L P I - L M P L I L S V Y I G F F T V V N D P H G T I A V V F S M I P L T S P I V M L M R I P F G V P W W Q I A I .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A3UBL1 Cluster: ABC transporter, permease protein, putative; n=1; Croceibacter atlanticus HTCC2559|Rep: ABC transporter, permease protein, putative - Croceibacter atlanticus HTCC2559 HSP 1 e-value: 1.0E-8 bit: 63.9 Len: 513 Query Start:282 Query End:794 Subject Strand: null Subject Start: 203 Subject End: 385 ......................................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G H Y D S S V S P I - - - - - - - - - - - - - - - - D T L M S F I Q I N I H N T V G I E F P L F F F L G I L L N G A I F S I I - - A T L S S S K A G R F L T P L G N M L I I L T I Y F G M Y - V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I P .......................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... R S V I E E K V N R I I E I I I S S V K P I H L M L G K I L G T S L A G I T Q F T I W V I L G S - - - - I L L T V V T T I L G - I D T S E G T I V Q Q Q A L E A A S N S N T M Q D F I I A F S K L P L L S L I - V C F F L Y F T G G Y F L Y S S I Y A A I G A A V D S E T D T Q Q F M L P V - I L P L M L G I Y V G F F S V I E N P H G T V S V I F S M I P L T S P I V M L M R I P F G V P .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7PU27 Cluster: ENSANGP00000016342; n=1; Anopheles gambiae str. PEST|Rep: ENSANGP00000016342 - Anopheles gambiae str. PEST HSP 1 e-value: 1.0E-8 bit: 63.9 Len: 531 Query Start:264 Query End:794 Subject Strand: null Subject Start: 80 Subject End: 240 ....................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G H Y D S S V S P I D T L M - - S F I Q I N I H N T V G I E F P L F F F L G I L L N G A I F S I I - A T L S S S K A G R F L T P L G N M L I I L T I Y F G M Y V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I P K M R I F I .......................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................... R S V L E E K N N R V V E I I I S S V K P F E L M M G K I L G V T L V A L T Q F I I W I A M T L G - - - - - - - - - - - - - - - - - - N I Q E I F T M V S H S L L G M D Y V T I I G V - F I F Y F L L G Y I F Y S S I Y A A V G S A V D N E T E T Q Q F T L F A I L P L M L S L Y G S F S I M N N P E G P L A F W L S I I P L T S P V A M I A R I P F G V P M W Q L L L .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A4CMJ7 Cluster: Hypothetical protein; n=1; Robiginitalea biformata HTCC2501|Rep: Hypothetical protein - Robiginitalea biformata HTCC2501 HSP 1 e-value: 4.0E-8 bit: 62.0 Len: 486 Query Start:309 Query End:794 Subject Strand: null Subject Start: 203 Subject End: 384 .................................................................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I - A Y A G Y F L V L I W Y D A N - - - - - - - - - Y I G H Y D S S V S - - - - P I D - - - - - T L M S F I Q I N I H N T V G I E F P L F F F L G I L L N G A I F S I I - - A T L S S S K A G R F L T P L G N M L I I L T I Y F G M Y - V A G N P D T E M T Q I L S Y L P I S S Y I A I .......................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................... R S V I E E K T S R I I E V I I S S V K P F Q L M L G K I I G T S L A G V T Q F L I W I L S A S L L M V L V L L F L D I D P G I L L E S R G M P G G L D A G M A S G A F P A D E T S R M I L E E F L Q L P M G L L I G F - F L I Y F I L G Y L I Y S S I Y A A I G A A V D N E T D T Q Q F I F P I - I L P L M L A I Y V G F F S V F S N P H G P I A V A F S I F P L T S P I V M .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q3ZXK9 Cluster: ABC transporter, permease protein; n=2; Dehalococcoides|Rep: ABC transporter, permease protein - Dehalococcoides sp. (strain CBDB1) HSP 1 e-value: 1.0E-7 bit: 60.5 Len: 531 Query Start:264 Query End:794 Subject Strand: null Subject Start: 212 Subject End: 373 ....................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G H Y D S S V S P I D T L M S F I Q I N I H N T V G I E F P L F F F L G I L L N G A I F S I I A T L S S S K A G R F L T P L G N M L I I L T I Y F G M Y V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I P K M R I F I .......................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................... Q G L S E E K E N R I M E V L L S S V T T R E L M T G K I V G L G L A G L I Q V A F W L V C A W G - - - - L V K F A T K T F G D I L G A L S - - - - - - - - I Q A D M I V V C L V F F I L G Y F L Y S I L M A A I G A I T P N V - - - R D G Q Q L S V I V T M S A A F P F Y L M P F I L N G G D N L L N K V L S L F P L T S P L T I I M R M G T G I P V W E I I L .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q46DM8 Cluster: Hypothetical protein; n=1; Methanosarcina barkeri str. Fusaro|Rep: Hypothetical protein - Methanosarcina barkeri (strain Fusaro / DSM 804) HSP 1 e-value: 3.0E-6 bit: 55.8 Len: 486 Query Start:309 Query End:794 Subject Strand: null Subject Start: 230 Subject End: 368 .................................................................................................................................................................................................................................................................................................................... R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G H Y D S S V S P I D T L M S F I Q I N I H N T V G I E F P L F F F L G I L L N G A I F S I I A T L S S S - K A G R F L T P L G N M L I I L T I Y F G M Y V A G N P D T E M T Q I L S Y L P I S S Y I A I .......................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................... R G V A E E K E N R I I E I L L S S A T P F E I L T G K I F G L G A V G L L Q V V I W L A A - - - - - - - - I M L G S R Y A - - L P V Q I E P I T L C L A L I - - - - - - - - - - - - - - Y F I F G F L F F A S V M A G I G A V T S S L Q E S Q Q I A G I F T F V A V F P L I F M Q M I V T N P D S L F S V F L S L F P L S S P V A M .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8THZ3 Cluster: Hypothetical protein; n=1; Methanosarcina acetivorans|Rep: Hypothetical protein - Methanosarcina acetivorans HSP 1 e-value: 3.0E-6 bit: 55.8 Len: 474 Query Start:321 Query End:794 Subject Strand: null Subject Start: 226 Subject End: 360 ................................................................................................................................................................................................................................................................................................................................ R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W I I A Y A G Y F L V L I W Y D A N Y I G H Y D S S V S P I D T L M S F I Q I N I H N T V G I E F P L F F F L G I L L N G A I F S I I A T L S S S - K A G R F L T P L G N M L I I L T I Y F G M Y V A G N P D T E M T Q I L S Y L P I S S .......................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................ R G V A E E K E N R I M E V L L S S V T P S E L L T G K V V G L G A V G L L Q I V V W - - - - - - - - L S V I F L G G G Y A L P V D - - - - - I E P M L L F I A L - - - - - - - - - - - I Y F L L G F L F F A S M M A G I G A V T G S L Q E S Q Q V A G I F T F V A V F P L I F M Q L I L T N P D S P V A V F L S L F P F T S .......................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A2U0B9 Cluster: ABC transporter, permease protein, putative; n=1; Polaribacter dokdonensis MED152|Rep: ABC transporter, permease protein, putative - Polaribacter dokdonensis MED152 HSP 1 e-value: 5.0E-6 bit: 55.1 Len: 510 Query Start:285 Query End:794 Subject Strand: null Subject Start: 181 Subject End: 367 ............................................................................................................................................................................................................................................................................................ R S M A E E K S N K L A E V L S I Y I D P K Y L V L G K I L G M S I A S L L Q V A I W - I I A Y A G Y F L V L I W Y D A N Y I G H Y D S S V S P - - - - - - - - - - - I D T L M S F I Q I N I H N T V G I E F P L F F F L - - - G I L L N G A I F S I I - - A T L S S S K A G R F L T P L G N M L I I L T I Y F G M - Y V A G N P D T E M T Q I L S Y L P I S S Y I A I P V L S V Y G I .......................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................ R S V I E E K T S R I I E V I V S S V K P F Q L M L G K I I G N A S A G L L Q F F I W G I I I F I I T T V A S S I F G V D M V E M Q T E N I S P E Q L E A A K Q A A G A D K M Q V V V Q E I L R L P I L K L F L L F I F Y F L G G Y M L Y S S L F A A V G A A V D N E T D T Q Q F M L P I - M L P L I L A V Y V G F A T V I S D P H G P I S V A F S Y I P L T S P I V M L M R V P F G V .......................................................................................................................................................................................................................................................................................................................................................... tagatcaagctgaactttccattgaagatcttctatggagagggcgccaatgccatacagattcagatttggaccacactggttgccaacctccttttgatggttatccagcgtaagctgacacgcgcgtagagtttctcaggacttgccacatgatcgtatgtactgatgtactatcatatctaacatctcaagctttttttgtacaatgttatagacaacaacagccctaaggtaaccccaacagatagaacaaagagtgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaggttgttgttgtataagataagggtcagattgcttatatccagctgctaaagacaggagagtagatagttcatctagttggatattatgagcatgaaaatccctacgactgcaacgtttttccacaacatcttgaaaagaatccgcaatctttattggaggagggagtctgaccaggagaattgaccgatatatagaaagccccacattgtgctgaagatttacgatatgctcattatagtgcctcagatgatcagccttagaagaaaacaaggctttattatttctggaagagatatgatattcaatatctaatggtagaattgatttaaacataagcta Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 21 End: 113 .................... M E D L L W R G R Q C H T D S D L D H T G C Q P P F D G Y P A ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 4 End: 129 ... M K L N F P L K I F Y G E G A N A I Q I Q I W T T L V A N L L L M V I Q R K L T R A ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 202 End: 318 ......................................................................................................................................................................................................... M Y N V I D N N S P K V T P T D R T K S D I N I L I F G I P Y T D S T G I A I ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 269 End: 397 ............................................................................................................................................................................................................................................................................ M F S S L V S H I Q I V L E L R Y N L R L E G R I I F E S F Q Y Q G C L Q H T S Q N K ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 53 Strand: + Start: 397 End: 555 ............................................................................................................................................................................................................................................................................................................................................................................................................ M V K I I S I F P N G V K N L P A L L L D K V A I I E N I A P F K R I P K K K K R G N S M P T V L W M F I ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 46 Strand: + Start: 543 End: 680 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M D V Y L N K R H K C I D W G H T R I I V P N I V C I I P N Q N Q E V S C I S Y N P Y R N L ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 50 Strand: + Start: 668 End: 817 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S Q P V T M M Q Y S F P K S C L K L N T L G L Y I W I E L L L I Y Y F F P L P Y S E V G C C C I R ................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 661 End: 846 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I H I A T C N N D A I L I P K I L P K T K Y F G S I Y M D R T S A N L L L F S S A I L R S R L L L Y K I R V R L L I S ...................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 864 End: 968 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V H L V G Y Y E H E N P Y D C N V F P Q H L E K N P Q S L L E E G V ............................................................................................................................................................................ Protein_Len: 35 Strand: + Start: 877 End: 981 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M D I M S M K I P T T A T F F H N I L K R I R N L Y W R R E S D Q E N ............................................................................................................................................................... Protein_Len: 41 Strand: + Start: 988 End: 1110 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Y R K P H I V L K I Y D M L I I V P Q M I S L R R K Q G F I I S G R D M I F N I .............................. Protein_Len: 60 Strand: - Start: 772 End: 1134 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P P P L R V L L I S R Y I S L G V N H Q L N V I H E N Y H R L H D A K S S F L A K N N R S S I H Y E I D L P L I S K F M ...... Protein_Len: 47 Strand: - Start: 625 End: 765 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ V L D S G L L I R C L S Y D M D C G T V I I C Y E N G F D Q R F S F V K P R Y I H I S S R S M ....................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 186 End: 842 ......................................................................................................................................................................................... I W I A V Q L L S A I S M G L I K G L V L Y K P D I Y I S L V E A L K N S K E E A M S R L L N N N Y L I L T L N S I D M .......................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 142 End: 345 ............................................................................................................................................. Q H V I M D L M E L K K Q V I N Y V V V A R L Y G W C I S C L T I Y I N E D K T D W I C I T S S N R Y L K L N S P L I M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: - Start: 66 End: 170 ................................................................. I Q V V S T A L R R K I T I W R L S V R A Y L K E P S A V H D Y T S M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 1 End: 111 L D L Q V K W Q L D E I S L A G I G Y L N L N P G C Q N G V E K Q H N D M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tagatcaagctgaactttccattgaagatcttctatggagagggcgccaatgccatacagattcagatttggaccacactggttgccaacctccttttgatggttatccagcgtaagctgacacgcgcgtagagtttctcaggacttgccacatgatcgtatgtactgatgtactatcatatctaacatctcaagctttttttgtacaatgttatagacaacaacagccctaaggtaaccccaacagatagaacaaagagtgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaggttgttgttgtataagataagggtcagattgcttatatccagctgctaaagacaggagagtagatagttcatctagttggatattatgagcatgaaaatccctacgactgcaacgtttttccacaacatcttgaaaagaatccgcaatctttattggaggagggagtctgaccaggagaattgaccgatatatagaaagccccacattgtgctgaagatttacgatatgctcattatagtgcctcagatgatcagccttagaagaaaacaaggctttattatttctggaagagatatgatattcaatatctaatggtagaattgatttaaacataagcta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 406 End: 435 .....................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACTCCATTAGGAAATATGCTAATTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 1078 End: 1107 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCATATCTCTTCCAGAAATAAT................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 82 Start: 375 End: 391 ......................................................................................................................................................................................................................................................................................................................................................................................TTGGGATGTATGTTGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. tagatcaagctgaactttccattgaagatcttctatggagagggcgccaatgccatacagattcagatttggaccacactggttgccaacctccttttgatggttatccagcgtaagctgacacgcgcgtagagtttctcaggacttgccacatgatcgtatgtactgatgtactatcatatctaacatctcaagctttttttgtacaatgttatagacaacaacagccctaaggtaaccccaacagatagaacaaagagtgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaggttgttgttgtataagataagggtcagattgcttatatccagctgctaaagacaggagagtagatagttcatctagttggatattatgagcatgaaaatccctacgactgcaacgtttttccacaacatcttgaaaagaatccgcaatctttattggaggagggagtctgaccaggagaattgaccgatatatagaaagccccacattgtgctgaagatttacgatatgctcattatagtgcctcagatgatcagccttagaagaaaacaaggctttattatttctggaagagatatgatattcaatatctaatggtagaattgatttaaacataagcta Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TF1747:TF1748|TF1747:TF1748:hypothetical protein:conserved hypothetical protein:->->:1881558..1882697 1140 tagatcaagctgaactttccattgaagatcttctatggagagggcgccaatgccatacagattcagatttggaccacactggttgccaacctccttttgatggttatccagcgtaagctgacacgcgcgtagagtttctcaggacttgccacatgatcgtatgtactgatgtactatcatatctaacatctcaagctttttttgtacaatgttatagacaacaacagccctaaggtaaccccaacagatagaacaaagagtgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaggttgttgttgtataagataagggtcagattgcttatatccagctgctaaagacaggagagtagatagttcatctagttggatattatgagcatgaaaatccctacgactgcaacgtttttccacaacatcttgaaaagaatccgcaatctttattggaggagggagtctgaccaggagaattgaccgatatatagaaagccccacattgtgctgaagatttacgatatgctcattatagtgcctcagatgatcagccttagaagaaaacaaggctttattatttctggaagagatatgatattcaatatctaatggtagaattgatttaaacataagcta Intra-Species Hit: Count: 1 Min: 1 Max: 1140 Len: 1140 Subject: tfor_TF1747_TF1748|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1881558,1882697]|1140 HSP 1 e-value: 0.0 bit: 686.0 Len: 346 Query Start:795 Query End:1140 Subject Strand: POSITIVE Subject Start: 795 Subject End: 1140 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagtaggttgttgttgtataagataagggtcagattgcttatatccagctgctaaagacaggagagtagatagttcatctagttggatattatgagcatgaaaatccctacgactgcaacgtttttccacaacatcttgaaaagaatccgcaatctttattggaggagggagtctgaccaggagaattgaccgatatatagaaagccccacattgtgctgaagatttacgatatgctcattatagtgcctcagatgatcagccttagaagaaaacaaggctttattatttctggaagagatatgatattcaatatctaatggtagaattgatttaaacataagcta ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagtaggttgttgttgtataagataagggtcagattgcttatatccagctgctaaagacaggagagtagatagttcatctagttggatattatgagcatgaaaatccctacgactgcaacgtttttccacaacatcttgaaaagaatccgcaatctttattggaggagggagtctgaccaggagaattgaccgatatatagaaagccccacattgtgctgaagatttacgatatgctcattatagtgcctcagatgatcagccttagaagaaaacaaggctttattatttctggaagagatatgatattcaatatctaatggtagaattgatttaaacataagcta HSP 2 e-value: 1.0E-134 bit: 480.0 Len: 263 Query Start:1 Query End:263 Subject Strand: POSITIVE Subject Start: 1 Subject End: 263 tagatcaagctgaactttccattgaagatcttctatggagagggcgccaatgccatacagattcagatttggaccacactggttgccaacctccttttgatggttatccagcgtaagctgacacgcgcgtagagtttctcaggacttgccacatgatcgtatgtactgatgtactatcatatctaacatctcaagcnnnnnnngtacaatgttatagacaacaacagccctaaggtaaccccaacagatagaacaaagagtga............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. tagatcaagctgaactttccattgaagatcttctatggagagggcgccaatgccatacagattcagatttggaccacactggttgccaacctccttttgatggttatccagcgtaagctgacacgcgcgtagagtttctcaggacttgccacatgatcgtatgtactgatgtactatcatatctaacatctcaagctttttttgtacaatgttatagacaacaacagccctaaggtaaccccaacagatagaacaaagagtga............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGAUCAAGCUGAACUUUCCAUUGAAGAUCUUCUAUGGAGAGGGCGCCAAUGCCAUACAGAUUCAGAUUUGGACCACACUGGUUGCCAACCUCCUUUUGAUGGUUAUCCAGCGUAAGCUGACACGCGCGUAGAGUUUCUCAGGACUUGCCACAUGAUCGUAUGUACUGAUGUACUAUCAUAUCUAACAUCUCAAGCUUUUUUUGUACAAUGUUAUAGACAACAACAGCCCUAAGGUAACCCCAACAGAUAGAACAAAGAGUGAUAUAAAUAUUCUCAUCUUUGGUAUCCCAUAUACAGAUAGUACUGGAAUUGCGAUAUAACUUGAGAUUGGAAGGUAGGAUAAUAUUUGAGUCAUUUCAGUAUCAGGGUUGCCUGCAACAUACAUCCCAAAAUAAAUAGUCAAGAUAAUUAGCAUAUUUCCUAAUGGAGUCAAAAAUCUACCUGCUUUGCUACUUGACAAAGUUGCGAUAAUAGAGAAUAUAGCUCCAUUUAAAAGAAUACCCAAAAAGAAAAAGAGAGGGAAUUCAAUGCCAACAGUGUUAUGGAUGUUUAUCUGAAUAAAAGACAUAAGUGUAUCGAUUGGGGACACACUAGAAUCAUAGUGCCCAAUAUAGUUUGCAUCAUACCAAAUCAGAACCAAGAAGUAUCCUGCAUAAGCUAUAAUCCAUAUCGCAACCUGUAACAAUGAUGCAAUACUCAUUCCCAAAAUCUUGCCUAAAACUAAAUACUUUGGGUCUAUAUAUAUGGAUAGAACUUCUGCUAAUUUAUUACUUUUUUCCUCUGCCAUACUCCGAAGUAGGUUGUUGUUGUAUAAGAUAAGGGUCAGAUUGCUUAUAUCCAGCUGCUAAAGACAGGAGAGUAGAUAGUUCAUCUAGUUGGAUAUUAUGAGCAUGAAAAUCCCUACGACUGCAACGUUUUUCCACAACAUCUUGAAAAGAAUCCGCAAUCUUUAUUGGAGGAGGGAGUCUGACCAGGAGAAUUGACCGAUAUAUAGAAAGCCCCACAUUGUGCUGAAGAUUUACGAUAUGCUCAUUAUAGUGCCUCAGAUGAUCAGCCUUAGAAGAAAACAAGGCUUUAUUAUUUCUGGAAGAGAUAUGAUAUUCAAUAUCUAAUGGUAGAAUUGAUUUAAACAUAAGCUA ((((((((.((((.((((((((.(((....))).)))))))).((((....(((((.((((...((..(((((((.....)))..)))).))...)))))))))....((((....))))....))))..........))))...((((((..(((((((.....((((.((((((((((((((((.((((..(((.........(((((((................(((((((((...((((...(((..((.....))..)))......(((((......(((((.((....(((......)))....)).)))))....))))))))).(((((((((......(((((.(((...((((((..(((((..........................((((((......((((...((((....)))).............))))......))))))...(((((((((...(.((.(((((((..........((((.(((...............))).))))..........((((...((((((((.(((((.............(((((.(.((((((....(((((......)))))))))))...)..))))).........)))))......)))))))).)))).))))))).))).)))))))))..)))))..))))))))))))))........))))))))).........)))))))))(((((((((.(((.(((..((((((...............((((((((.(((......((((.(.(((((.(((((........((((......(((((((((((((((((((...((......))...))))......))))))))))...))))).......))))))))).))))).).)))).............(((((........)))))..))).))))))))......))))))..))).)))))))))))).......))))))))))..))))))).))))))......))))))).)))))))))))(((((..........))))).................((((((........))))))..))))))..))))))))........... (-278.56) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGCUUAUGUUUAAAUCAAUUCUACCAUUAGAUAUUGAAUAUCAUAUCUCUUCCAGAAAUAAUAAAGCCUUGUUUUCUUCUAAGGCUGAUCAUCUGAGGCACUAUAAUGAGCAUAUCGUAAAUCUUCAGCACAAUGUGGGGCUUUCUAUAUAUCGGUCAAUUCUCCUGGUCAGACUCCCUCCUCCAAUAAAGAUUGCGGAUUCUUUUCAAGAUGUUGUGGAAAAACGUUGCAGUCGUAGGGAUUUUCAUGCUCAUAAUAUCCAACUAGAUGAACUAUCUACUCUCCUGUCUUUAGCAGCUGGAUAUAAGCAAUCUGACCCUUAUCUUAUACAACAACAACCUACUUCGGAGUAUGGCAGAGGAAAAAAGUAAUAAAUUAGCAGAAGUUCUAUCCAUAUAUAUAGACCCAAAGUAUUUAGUUUUAGGCAAGAUUUUGGGAAUGAGUAUUGCAUCAUUGUUACAGGUUGCGAUAUGGAUUAUAGCUUAUGCAGGAUACUUCUUGGUUCUGAUUUGGUAUGAUGCAAACUAUAUUGGGCACUAUGAUUCUAGUGUGUCCCCAAUCGAUACACUUAUGUCUUUUAUUCAGAUAAACAUCCAUAACACUGUUGGCAUUGAAUUCCCUCUCUUUUUCUUUUUGGGUAUUCUUUUAAAUGGAGCUAUAUUCUCUAUUAUCGCAACUUUGUCAAGUAGCAAAGCAGGUAGAUUUUUGACUCCAUUAGGAAAUAUGCUAAUUAUCUUGACUAUUUAUUUUGGGAUGUAUGUUGCAGGCAACCCUGAUACUGAAAUGACUCAAAUAUUAUCCUACCUUCCAAUCUCAAGUUAUAUCGCAAUUCCAGUACUAUCUGUAUAUGGGAUACCAAAGAUGAGAAUAUUUAUAUCACUCUUUGUUCUAUCUGUUGGGGUUACCUUAGGGCUGUUGUUGUCUAUAACAUUGUACAAAAAAAGCUUGAGAUGUUAGAUAUGAUAGUACAUCAGUACAUACGAUCAUGUGGCAAGUCCUGAGAAACUCUACGCGCGUGUCAGCUUACGCUGGAUAACCAUCAAAAGGAGGUUGGCAACCAGUGUGGUCCAAAUCUGAAUCUGUAUGGCAUUGGCGCCCUCUCCAUAGAAGAUCUUCAAUGGAAAGUUCAGCUUGAUCUA ..(((.((((.....(((((((((....)))).))))).((((((((((................(((((((........)))))))...(((((.((((......((((.....)))).........(.(((((((.((..............((........)).(((((((.(((((...........((((((((....((((((........))))))....))))))))..)))))......((((....(((((((..((((((...)))))).....((((.....)))).))))))).)))).)))))))..........(((((((((.((((((((...........))))......(((((...((((((((.....(((((.((((((((((((((((((.(((.((.....)))))))))))))....(((((((.....((((((((((((((((((((((.((((((((...(((((....)))))......((((((...(((((.(((.....((((......(((...((((((((.......))))))))...))).(((((....)))))..)))).......))).)))))((((.(((...............))).))))..)))))).))))))))...)))).)))))))))))......)))))))...((((((((.(((((.((..((((..(((((((.....((((..(.........)..))))))))))).((((....))))...))))...)).)))))....)).))))))..........................))))))).))))))))))))))).(((((((((...........))).)))))).....)))))))).)))))..))))..)))))))))))...))))))).).......)))).)))))..))))))))))..)))).)))......(((((..(((((.((...(((...)))...))...)))))......(((((((..((((.....(((((..(((..(((((((.((.((..........)).)).))))))).))).)))))...(((....))).))))...))))))).))))).. (-284.08) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 520 59 15 229 185 tfor:TF0669|5end_hypothetical_protein_713384..713614_POSITIVE 390 133 91 48 11 tfor:TF2267|5end_lysozyme-related_protein_2434869..2435099_POSITIVE 384 987 941 205 155 tfor:TF1429|5end_S-adenosyl-methyltransferase_1513927..1514157_POSITIVE 382 128 81 216 173 tfor:TF2770|5end_conserved_hypothetical_protein_2956308..2956538_POSITIVE 381 144 101 69 27 tfor:TF0880|5end_conserved_hypothetical_protein_934010..934240_POSITIVE 376 147 101 214 167 tfor:TF2437|5end_elongation_factor_P_2615104..2615334_POSITIVE 362 149 103 89 44 tfor:TF1710|5end_possible_cell_filamentation_protein_1829679..1829909_POSITIVE 353 118 74 137 81 tfor:TF1720|5end_conserved_hypothetical_protein_1843679..1843909_POSITIVE 353 130 81 78 32 tfor:TF0001|5end_hypothetical_protein_-116..114_POSITIVE 346 700 652 229 187 tfor:TF3158|5end_inner_membrane_protein_3393729..3393959_POSITIVE 343 987 944 184 131 tfor:TF1437|5end_hypothetical_protein_1521940..1522170_POSITIVE 336 120 74 62 13 tfor:TF0893|5end_conserved_hypothetical_protein_941754..941984_POSITIVE 334 128 82 179 132 tfor:TF2904|5end_ATP-dependent__helicase,_possible_UvrD/REP_helicase_domain_protein_3098903..3099133_POSITIVE 332 987 942 206 151 tfor:TF1909|5end_cobalamin_(5`-phosphate)_synthase_2063207..2063437_POSITIVE 331 157 112 58 10 tfor:TF0038|5end_conserved_hypothetical_protein_39907..40137_POSITIVE 329 114 71 182 143 tfor:TF2239|5end_hypothetical_protein_2414537..2414767_POSITIVE 326 150 101 81 23 tfor:TF2499|5end_possible_thioesterase_family_protein_2673903..2674133_POSITIVE 325 989 943 64 2 tfor:TF2182|5end_conserved_hypothetical_protein;_possible_integral_membrane_protein_2354874..2355104_POSITIVE 324 150 101 90 24 tfor:TF2038|5end_hypothetical_protein_2198978..2199208_POSITIVE 323 120 77 91 39 tfor:TF1474|5end_6-phosphogluconolactonase_1567342..1567572_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 390 133 91 48 11 tfor:TF2266|3end_transfer_region-related_protein,_TraQ_2434949..2435099_POSITIVE 381 144 101 64 22 tfor:TF0879|3end_TraG_family_protein_934085..934235_POSITIVE 370 125 82 66 19 tfor:TF0668|3end_inorganic_pyrophosphatase_713235..713385_POSITIVE 356 159 111 145 95 tfor:TF3120|3end_HD_superfamily_hydrolase_3354775..3354925_POSITIVE 346 147 101 86 35 tfor:TF1087|3end_ISPg4_transposase_1158225..1158375_POSITIVE 332 149 101 144 92 tfor:TF2953|3end_possible_TonB-dependent_outer_membrane_receptor_3161501..3161651_POSITIVE 331 157 112 62 14 tfor:TF0037|3end_sialic_acid-specific_9-O-acetylesterase_39991..40141_POSITIVE 325 989 943 73 11 tfor:TF2181|3end_conserved_hypothetical_protein_2354963..2355113_POSITIVE 321 126 88 52 5 tfor:TF1719|3end_ribonuclease_R_1843668..1843818_POSITIVE 319 1009 961 112 47 tfor:TF2473|3end_poly(A)_polymerase/tRNA_nucleotidyltransferase_2652010..2652160_POSITIVE 318 128 82 46 10 tfor:TF1334|3end_hypothetical_protein_1416423..1416573_POSITIVE 317 120 75 148 111 tfor:TF2913|3end_conserved_hypothetical_protein_3109117..3109267_POSITIVE 317 986 943 66 25 tfor:TF2465|3end_O-methyltransferase_2644443..2644593_POSITIVE 315 153 111 148 93 tfor:TF2373|3end_UDP-3-O-acyl-GlcNAc_deacetylase_2539806..2539956_POSITIVE 314 827 784 65 22 tfor:TF2676|3end_conserved_hypothetical_protein_2850831..2850981_POSITIVE 314 140 92 138 94 tfor:TF2255|3end_transfer_region-related_protein,_TraH_2427961..2428111_POSITIVE 312 987 942 74 16 tfor:TF1070|3end_hydrolase_1141013..1141163_POSITIVE 311 148 103 86 23 tfor:TF2640|3end_hypothetical_protein_2809533..2809683_POSITIVE 310 988 941 101 56 tfor:TF1601|3end_conserved_hypothetical_protein_1715539..1715689_POSITIVE 309 47 9 82 44 tfor:TF1747|3end_hypothetical_protein_1881497..1881647_POSITIVE