Origin IGS: tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagggaggaaatcaaattaccccacccttgcgggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgtttgaacaatggtcaatggttaatagtcaatggttatgcgtggtacagaccaaatcatgtaccctacatgacaattaacaactgacaattaacaataattaggagtgtgtta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taacacactcctaattattgttaattgtcagttgttaattgtcatgtagggtacatgatttggtctgtaccacgcataaccattgactattaaccattgaccattgttcaaacgccccaagggcatacaagggctgtaagcccgttttatttcagccccatcccgcaagggtggggtaatttgatttcctcccttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattaaacaactcaacgcccgaagggcatcacttttcacttttagtttttcacttttctca Mask Tandem Repeat Region ================================================ tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagggaggaaatcaaattaccccacccttgcgggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgtttgaacaatggtcaatggttaatagtcaatggttatgcgtggtacagaccaaatcatgtaccctacannnnnnnnnnnnnnnnnnnnnnnnnnntaattaggagtgtgtta Find is-nt database================================================ Query_seq: TF1715:TF1716|TF1715:TF1716:thermolysin; zinc metalloprotease:hypothetical protein:->->:1837263..1837581 319 tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagggaggaaatcaaattaccccacccttgcgggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgtttgaacaatggtcaatggttaatagtcaatggttatgcgtggtacagaccaaatcatgtaccctacatgacaattaacaactgacaattaacaataattaggagtgtgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1715:TF1716|TF1715:TF1716:thermolysin; zinc metalloprotease:hypothetical protein:->->:1837263..1837581 319 tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagggaggaaatcaaattaccccacccttgcgggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgtttgaacaatggtcaatggttaatagtcaatggttatgcgtggtacagaccaaatcatgtaccctacatgacaattaacaactgacaattaacaataattaggagtgtgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1715:TF1716|TF1715:TF1716:thermolysin; zinc metalloprotease:hypothetical protein:->->:1837263..1837581 319 tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagggaggaaatcaaattaccccacccttgcgggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgtttgaacaatggtcaatggttaatagtcaatggttatgcgtggtacagaccaaatcatgtaccctacatgacaattaacaactgacaattaacaataattaggagtgtgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagggaggaaatcaaattaccccacccttgcgggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgtttgaacaatggtcaatggttaatagtcaatggttatgcgtggtacagaccaaatcatgtaccctacatgacaattaacaactgacaattaacaataattaggagtgtgtta Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 81 End: 170 ................................................................................ M I A N K L I Q A Y S P Q K T R E E I K L P H P C G M G L K ..................................................................................................................................................... Protein_Len: 31 Strand: + Start: 190 End: 282 ............................................................................................................................................................................................. M Y A L G A F E Q W S M V N S Q W L C V V Q T K S C T L H D N ..................................... Protein_Len: 60 Strand: + Start: 95 End: 289 .............................................................................................. M N S G L Q P S K N K G G N Q I T P P L R D G A E I K R A Y S P C M P L G R L N N G Q W L I V N G Y A W Y R P N H V P Y .............................. Protein_Len: 35 Strand: - Start: 119 End: 223 ...................................................................................................................... F V L S S I L N G W G Q P I P S F Y F P S V A R T H G Q P T Q V I T M ................................................................................................ Protein_Len: 30 Strand: - Start: 3 End: 92 .. S F H F V L L S F H H G E P T S N N L Q Q S V A S F Q N S M ................................................................................................................................................................................................................................... tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagggaggaaatcaaattaccccacccttgcgggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgtttgaacaatggtcaatggttaatagtcaatggttatgcgtggtacagaccaaatcatgtaccctacatgacaattaacaactgacaattaacaataattaggagtgtgtta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagggaggaaatcaaattaccccacccttgcgggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgtttgaacaatggtcaatggttaatagtcaatggttatgcgtggtacagaccaaatcatgtaccctacatgacaattaacaactgacaattaacaataattaggagtgtgtta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 70 HP_score: -2.7 Tail_Score: -5.02476 Start: 124 End: 154 Full_Region: ttcagccccatcccg caagggtggggtaat ttg atttcctcccttg ttttttgagggctgt ...........................................................................................................................caagggtggggtaatttgatttcctcccttg..................................................................................................................................................................... TransTerm Strand: - Conf: 57 HP_score: -2.7 Tail_Score: -4.10953 Start: 141 End: 168 Full_Region: taagcccgttttatt tcagccccatcc cgcaa gggtggggtaa tttgatttcctccct ............................................................................................................................................tcagccccatcccgcaagggtggggtaa....................................................................................................................................................... TransTerm Strand: - Conf: 77 HP_score: -10.4 Tail_Score: -3.08002 Start: 144 End: 164 Full_Region: cccgttttatttcag ccccatcc cgcaa gggtgggg taatttgatttcctc ...............................................................................................................................................ccccatcccgcaagggtgggg........................................................................................................................................................... TransTerm Strand: - Conf: 78 HP_score: -5.6 Tail_Score: -4.86731 Start: 176 End: 190 Full_Region: ccccaagggcataca agggct gta agcccg ttttatttcagcccc ...............................................................................................................................................................................agggctgtaagcccg................................................................................................................................. TransTerm Strand: + Conf: 73 HP_score: -9.1 Tail_Score: -3.52192 Start: 177 End: 189 Full_Region: GGGCTGAAATAAAAC GGGCT TAC AGCCC TTGTATGCCCTTGGG ................................................................................................................................................................................GGGCTTACAGCCC.................................................................................................................................. TransTerm Strand: - Conf: 73 HP_score: -9.1 Tail_Score: -3.51557 Start: 177 End: 189 Full_Region: cccaagggcatacaa gggct gta agccc gttttatttcagccc ................................................................................................................................................................................gggctgtaagccc.................................................................................................................................. Find igs database================================================ Query_seq: TF1715:TF1716|TF1715:TF1716:thermolysin; zinc metalloprotease:hypothetical protein:->->:1837263..1837581 319 tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagggaggaaatcaaattaccccacccttgcgggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgtttgaacaatggtcaatggttaatagtcaatggttatgcgtggtacagaccaaatcatgtaccctacatgacaattaacaactgacaattaacaataattaggagtgtgtta Intra-Species Hit: Count: 10 Min: 1 Max: 319 Len: 319 Subject: tfor_TF1715_TF1716|thermolysin; zinc metalloprotease:hypothetical protein|POSITIVE:POSITIVE|[1837263,1837581]|319 HSP 1 e-value: 1.0E-180 bit: 632.0 Len: 319 Query Start:1 Query End:319 Subject Strand: POSITIVE Subject Start: 1 Subject End: 319 tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagggaggaaatcaaattaccccacccttgcgggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgtttgaacaatggtcaatggttaatagtcaatggttatgcgtggtacagaccaaatcatgtaccctacatgacaattaacaactgacaattaacaataattaggagtgtgtta tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagggaggaaatcaaattaccccacccttgcgggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgtttgaacaatggtcaatggttaatagtcaatggttatgcgtggtacagaccaaatcatgtaccctacatgacaattaacaactgacaattaacaataattaggagtgtgtta Subject: tfor_TF0358_TF0359|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[376365,377082]|718 HSP 1 e-value: 8.0E-87 bit: 321.0 Len: 190 Query Start:1 Query End:190 Subject Strand: NEGATIVE Subject Start: 529 Subject End: 718 tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagggaggaaatcaaattaccccacccttgcgggatggggctgaaataaaacgggcttacagccct................................................................................................................................. tgagaaaagtgaaaaacgaaaagtgaaaagtgatgctcttcgggcgttgagttgttgaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagagcggaaatcaaattaccccacccttgcgggatggggctgaaatagaacgggctttcagccct................................................................................................................................. HSP 2 e-value: 5.0E-8 bit: 60.0 Len: 34 Query Start:32 Query End:65 Subject Strand: NEGATIVE Subject Start: 485 Subject End: 518 ...............................gatgcccttcgggcgttgagttgtttaattgttg.............................................................................................................................................................................................................................................................. ...............................gatgcccttcgggcgttgagttgtttgattgttg.............................................................................................................................................................................................................................................................. Subject: tfor_TF2161_TF2162|conserved hypothetical protein:thermolysin precursor|POSITIVE:POSITIVE|[2338423,2338808]|386 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 87 Query Start:143 Query End:229 Subject Strand: NEGATIVE Subject Start: 130 Subject End: 216 ..............................................................................................................................................accccacccttgcgggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgtttgaacaatggtcaatggtta.......................................................................................... ..............................................................................................................................................accccacccttacgggatggggctgaaacagaacgggctttcagcccttgtatgcccttggggcgtttgaacaatggtcaatggtta.......................................................................................... HSP 2 e-value: 9.0E-19 bit: 95.6 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 339 Subject End: 386 tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgtt............................................................................................................................................................................................................................................................................... tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgtt............................................................................................................................................................................................................................................................................... HSP 3 e-value: 3.0E-6 bit: 54.0 Len: 56 Query Start:233 Query End:288 Subject Strand: NEGATIVE Subject Start: 83 Subject End: 140 ........................................................................................................................................................................................................................................gtcaatggttatgcgtg--gtacagaccaaatcatgtaccctacatgacaattaacaa............................... ........................................................................................................................................................................................................................................gtcaatggttatacgtgtggtacagaccaaatcatgtactctgcatgataattgacaa............................... Subject: tfor_TF1535_TF1537|possible outer membrane receptor protein:hypothetical protein|POSITIVE:POSITIVE|[1642270,1643045]|776 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 67 Query Start:222 Query End:288 Subject Strand: NEGATIVE Subject Start: 290 Subject End: 356 .............................................................................................................................................................................................................................aatggttaatagtcaatggttatgcgtggtacagaccaaatcatgtaccctacatgacaattaacaa............................... .............................................................................................................................................................................................................................aatgtttaatcgtcaatggttatgcgtggtacagccccaatcatgtaccctgcatgacaattaacaa............................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 55 Query Start:156 Query End:210 Subject Strand: NEGATIVE Subject Start: 396 Subject End: 450 ...........................................................................................................................................................gggatggggctgaaataaaacgggcttacagcccttgtatgcccttggggcgttt............................................................................................................. ...........................................................................................................................................................gggatggggctgaaatagaacggactttcagcccatgtatgcccctggggcgttt............................................................................................................. Subject: tfor_TF0346_TF0347|hypothetical protein:possible serine protease|POSITIVE:POSITIVE|[367377,367681]|305 HSP 1 e-value: 1.0E-17 bit: 91.7 Len: 62 Query Start:4 Query End:65 Subject Strand: NEGATIVE Subject Start: 234 Subject End: 295 ...gaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgttgagttgtttaattgttg.............................................................................................................................................................................................................................................................. ...gaaaagtgagaaacgaaaagtgaaaagtgatgcccttcgggcgttgaattgttgaattgttg.............................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:143 Query End:191 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 135 ..............................................................................................................................................accccacccttgcgggatggggctgaaataaaacgggcttacagccctt................................................................................................................................ ..............................................................................................................................................accccacccttacgggatggggctgaaatatatcgggtttgcagccctt................................................................................................................................ Subject: tfor_TF2172_TF2174|hypothetical protein:possible endopeptidase precursor|POSITIVE:POSITIVE|[2346196,2346431]|236 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 189 Subject End: 236 tgagaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgtt............................................................................................................................................................................................................................................................................... tgagaaaagtaaaaaactaaaagtgaaaagtgatgcccttcgggcgtt............................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:143 Query End:191 Subject Strand: NEGATIVE Subject Start: 15 Subject End: 63 ..............................................................................................................................................accccacccttgcgggatggggctgaaataaaacgggcttacagccctt................................................................................................................................ ..............................................................................................................................................accccacccttacgggatggggctgaaatatatctggcttgcagccctt................................................................................................................................ Subject: tfor_TF2166_TF2167|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2342423,2342725]|303 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 45 Query Start:4 Query End:48 Subject Strand: NEGATIVE Subject Start: 251 Subject End: 295 ...gaaaagtgaaaaactaaaagtgaaaagtgatgcccttcgggcgtt............................................................................................................................................................................................................................................................................... ...gaaaagtgaaaaacgaaaagtgaaaagtgatgcccttcgggcgtt............................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:143 Query End:191 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 135 ..............................................................................................................................................accccacccttgcgggatggggctgaaataaaacgggcttacagccctt................................................................................................................................ ..............................................................................................................................................accccacccttacgggatggggctgaaatatatctggctttcagccctt................................................................................................................................ Subject: tfor_TF0821_TF0822|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[880256,880626]|371 HSP 1 e-value: 8.0E-13 bit: 75.8 Len: 50 Query Start:142 Query End:191 Subject Strand: POSITIVE Subject Start: 244 Subject End: 293 .............................................................................................................................................taccccacccttgcgggatggggctgaaataaaacgggcttacagccctt................................................................................................................................ .............................................................................................................................................taccccacccttgcgggatggggctgaaataattcgggctttcagccctt................................................................................................................................ HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 39 Query Start:233 Query End:271 Subject Strand: POSITIVE Subject Start: 304 Subject End: 342 ........................................................................................................................................................................................................................................gtcaatggttatgcgtggtacagaccaaatcatgtaccc................................................ ........................................................................................................................................................................................................................................gtcaatggttatgcgtggtacacgccgaatcatgtaccc................................................ Subject: tfor_TF0366_TF0367|hypothetical protein:eukaryotic-like metalloproteinase|POSITIVE:POSITIVE|[383872,384146]|275 HSP 1 e-value: 8.0E-13 bit: 75.8 Len: 42 Query Start:24 Query End:65 Subject Strand: NEGATIVE Subject Start: 234 Subject End: 275 .......................tgaaaagtgatgcccttcgggcgttgagttgtttaattgttg.............................................................................................................................................................................................................................................................. .......................tgaaaagtgatgcccttcgggcgttgagttgttgaattgttg.............................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:143 Query End:191 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 135 ..............................................................................................................................................accccacccttgcgggatggggctgaaataaaacgggcttacagccctt................................................................................................................................ ..............................................................................................................................................accccacccttacgggatggggctgaaatatatctggctttcagccctt................................................................................................................................ Subject: tfor_TF0362_TF0364|hypothetical protein:ysyl endopeptidase|POSITIVE:POSITIVE|[380260,380534]|275 HSP 1 e-value: 8.0E-13 bit: 75.8 Len: 42 Query Start:24 Query End:65 Subject Strand: NEGATIVE Subject Start: 234 Subject End: 275 .......................tgaaaagtgatgcccttcgggcgttgagttgtttaattgttg.............................................................................................................................................................................................................................................................. .......................tgaaaagtgatgcccttcgggcgttgagttgttgaattgttg.............................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:143 Query End:191 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 135 ..............................................................................................................................................accccacccttgcgggatggggctgaaataaaacgggcttacagccctt................................................................................................................................ ..............................................................................................................................................accccacccttacgggatggggctgaaatatatctggctttcagccctt................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAGAAAAGUGAAAAACUAAAAGUGAAAAGUGAUGCCCUUCGGGCGUUGAGUUGUUUAAUUGUUGGCUGACUGCUGAAAACUGAUUGCUAAUAAAUUAAUUCAGGCUUACAGCCCUCAAAAAACAAGGGAGGAAAUCAAAUUACCCCACCCUUGCGGGAUGGGGCUGAAAUAAAACGGGCUUACAGCCCUUGUAUGCCCUUGGGGCGUUUGAACAAUGGUCAAUGGUUAAUAGUCAAUGGUUAUGCGUGGUACAGACCAAAUCAUGUACCCUACAUGACAAUUAACAACUGACAAUUAACAAUAAUUAGGAGUGUGUUA ................((((...((....((((((((((..(((((((((.((.(((..(((((...(((..((((((..((((................))))..)).))))..)))...)))))..))).)).)))..(((((((((((....))).))))).)))........((((.....))))....))))))..))))))))...))....((((...((((((.((((..(((((((..((((....))))...)))).))).....)))).))))))...))))......))....)))).......... (-88.69) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACACACUCCUAAUUAUUGUUAAUUGUCAGUUGUUAAUUGUCAUGUAGGGUACAUGAUUUGGUCUGUACCACGCAUAACCAUUGACUAUUAACCAUUGACCAUUGUUCAAACGCCCCAAGGGCAUACAAGGGCUGUAAGCCCGUUUUAUUUCAGCCCCAUCCCGCAAGGGUGGGGUAAUUUGAUUUCCUCCCUUGUUUUUUGAGGGCUGUAAGCCUGAAUUAAUUUAUUAGCAAUCAGUUUUCAGCAGUCAGCCAACAAUUAAACAACUCAACGCCCGAAGGGCAUCACUUUUCACUUUUAGUUUUUCACUUUUCUCA ..........((((...(((.((((.((((((.((((((.(((((((..((((((.(((...)))))))))..))).......)))).)))))).)))))).))))..)))..((((...((((......((((.....))))...........((((((.(((....)))))))))................((((((.(((..(((((...((.((((.....................))))))...)))))..)))..))))))......))))...))))..............))))................ (-92.61) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 934 190 142 111 63 tfor:TF2202|5end_hypothetical_protein_2378682..2378912_POSITIVE 915 189 142 231 184 tfor:TF3082|5end_conserved_hypothetical_protein_3316431..3316661_POSITIVE 907 190 144 225 179 tfor:TF1275|5end_transcription-repair_coupling_factor_1357866..1358096_POSITIVE 866 90 41 181 132 tfor:TF0359|5end_conserved_hypothetical_protein_376943..377173_POSITIVE 846 188 142 109 63 tfor:TF0370|5end_hypothetical_protein_386028..386258_POSITIVE 820 48 1 139 92 tfor:TF2162|5end_thermolysin_precursor_2338669..2338899_POSITIVE 816 50 1 141 92 tfor:TF0351|5end_hypothetical_protein_370922..371152_POSITIVE 797 48 1 139 92 tfor:TF2174|5end_possible_endopeptidase_precursor_2346292..2346522_POSITIVE 791 199 151 49 3 tfor:TF2665|5end_hypothetical_protein_2841973..2842203_POSITIVE 791 190 144 111 65 tfor:TF1516|5end_transposase_fragment_1626407..1626637_POSITIVE 760 69 21 138 89 tfor:TF0367|5end_eukaryotic-like__metalloproteinase_384007..384237_POSITIVE 760 69 21 138 89 tfor:TF0364|5end_ysyl_endopeptidase_380395..380625_POSITIVE 738 69 21 168 119 tfor:TF0347|5end_possible_serine_protease_367542..367772_POSITIVE 711 56 11 138 93 tfor:TF0341|5end_conserved_hypothetical_protein_364348..364578_POSITIVE 702 48 4 144 100 tfor:TF2167|5end_hypothetical_protein_2342586..2342816_POSITIVE 697 169 122 231 183 tfor:TF2048|5end_conserved_hypothetical_protein_2210643..2210873_POSITIVE 690 65 21 165 121 tfor:TF1172|5end_ABC_transporter,_permease_component_1252806..1253036_POSITIVE 682 170 121 50 2 tfor:TF2668|5end_hypothetical_protein_2842471..2842701_POSITIVE 676 65 21 165 121 tfor:TF1173|5end_ABC_transporter,_permease_component_1255444..1255674_POSITIVE 568 117 71 124 81 tfor:TF2824|5end_nucleoside-transporting_protein_nupG_3014701..3014931_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 907 190 144 47 1 tfor:TF3003|3end_hypothetical_protein_3220629..3220779_POSITIVE 804 190 143 75 28 tfor:TF2172|3end_hypothetical_protein_2346135..2346285_POSITIVE 778 190 141 122 73 tfor:TF0340|3end_hypothetical_protein_364257..364407_POSITIVE 690 65 21 78 34 tfor:TF1170|3end_conserved_hypothetical_protein_1252799..1252949_POSITIVE 628 167 122 151 107 tfor:TF1274|3end_hypothetical_protein_1357895..1358045_POSITIVE 628 150 101 149 99 tfor:TF0369|3end_hypothetical_protein_386186..386336_POSITIVE 532 268 221 61 14 tfor:TF0469|3end_hypothetical_protein_487228..487378_POSITIVE 476 268 222 129 69 tfor:TF2997|3end_hypothetical_protein_3211664..3211814_POSITIVE 471 266 222 75 21 tfor:TF1848|3end_conserved_hypothetical_protein_1997944..1998094_POSITIVE 439 206 166 111 71 tfor:TF2816|3end_hypothetical_protein_3007184..3007334_POSITIVE 433 268 222 94 48 tfor:TF1578|3end_hypothetical_protein_1686416..1686566_POSITIVE 433 307 261 91 44 tfor:TF1483|3end_glycosyltransferase_family_protein_1578825..1578975_POSITIVE 424 270 221 125 75 tfor:TF2996|3end_hypothetical_protein_3211121..3211271_POSITIVE 418 90 41 83 27 tfor:TF1165|3end_conserved_hypothetical_protein_1245921..1246071_POSITIVE 407 90 46 77 26 tfor:TF1172|3end_ABC_transporter,_permease_component_1255213..1255363_POSITIVE 385 300 260 42 2 tfor:TF0021|3end_outer_membrane_phospholipase_A_16919..17069_POSITIVE 365 190 144 113 53 tfor:TF1588|3end_hypothetical_protein_1702560..1702710_POSITIVE 364 219 177 137 83 tfor:TF0991|3end_probable_NAD(FAD)-dependent_dehydrogenase_1048334..1048484_POSITIVE 360 45 4 46 4 tfor:TF0016|3end_hypothetical_protein_10581..10731_POSITIVE 354 188 152 141 102 tfor:TF1954|3end_long-chain-fatty-acid--CoA_ligase_2106940..2107090_POSITIVE