Origin IGS: taatcacgctcacaaacgagcattaatcgaatagtaaatagcagtaagttactatcttactgctatttttattttctatagtttctcgtacttcttcgttttctatcgattttagtcgtgtatttgtaccatatttgtgccgcgacctattagtgtataaagtgcgacttaaataaaaataaaaattgattatcagatagataagaaaagcgtatgccagctgcaaaatttcagattgagcgaaagtgcgaattgtgtggggagacctttcttgccaagacaatcacatcaagatattgttctatacaatgctcaaggtctgcgtattcacaaaagaagcgagaggaaaagttggaagagcttaggcgagagaaggccgcaaaggtttccaaggatcaaccctacctttctatctccgatgctattgccctatacgacgtttgcagagatacgctataccgacttgttagaagtaaggctctccgaagttataacttgggaaaaaggatgactcgcatctgtaaagaagatttagaacgcaactttaatctgagacctgttgatgagcaaaagccgagaacaagaagtgaggctaaactttacaaccttgagccagagcattgttacacgatcggtgaaataacaaccaagtttggtgttacagaaggcacggtatataagcatatcagaaaattttccatccccataaggcagattggcaactatgtctatgccccaaaatcagagatagaccaactgtacaaataaccttagatacat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 atgtatctaaggttatttgtacagttggtctatctctgattttggggcatagacatagttgccaatctgccttatggggatggaaaattttctgatatgcttatataccgtgccttctgtaacaccaaacttggttgttatttcaccgatcgtgtaacaatgctctggctcaaggttgtaaagtttagcctcacttcttgttctcggcttttgctcatcaacaggtctcagattaaagttgcgttctaaatcttctttacagatgcgagtcatcctttttcccaagttataacttcggagagccttacttctaacaagtcggtatagcgtatctctgcaaacgtcgtatagggcaatagcatcggagatagaaaggtagggttgatccttggaaacctttgcggccttctctcgcctaagctcttccaacttttcctctcgcttcttttgtgaatacgcagaccttgagcattgtatagaacaatatcttgatgtgattgtcttggcaagaaaggtctccccacacaattcgcactttcgctcaatctgaaattttgcagctggcatacgcttttcttatctatctgataatcaatttttatttttatttaagtcgcactttatacactaataggtcgcggcacaaatatggtacaaatacacgactaaaatcgatagaaaacgaagaagtacgagaaactatagaaaataaaaatagcagtaagatagtaacttactgctatttactattcgattaatgctcgtttgtgagcgtgatta Mask Tandem Repeat Region ================================================ taatcacgctcacaaacgagcattaatcgaatagtaaatagcagtaagttactatcttactgctatttttattttctatagtttctcgtacttcttcgttttctatcgattttagtcgtgtatttgtaccatatttgtgccgcgacctattagtgtataaagtgcgacttaaataaaaataaaaattgattatcagatagataagaaaagcgtatgccagctgcaaaatttcagattgagcgaaagtgcgaattgtgtggggagacctttcttgccaagacaatcacatcaagatattgttctatacaatgctcaaggtctgcgtattcacaaaagaagcgagaggaaaagttggaagagcttaggcgagagaaggccgcaaaggtttccaaggatcaaccctacctttctatctccgatgctattgccctatacgacgtttgcagagatacgctataccgacttgttagaagtaaggctctccgaagttataacttgggaaaaaggatgactcgcatctgtaaagaagatttagaacgcaactttaatctgagacctgttgatgagcaaaagccgagaacaagaagtgaggctaaactttacaaccttgagccagagcattgttacacgatcggtgaaataacaaccaagtttggtgttacagaaggcacggtatataagcatatcagaaaattttccatccccataaggcagattggcaactatgtctatgccccaaaatcagagatagaccaactgtacaaataaccttagatacat Find is-nt database================================================ Query_seq: TF1690:TF1691|TF1690:TF1691:chaperone protein dnaK:integrase:->->:1808782..1809561 780 taatcacgctcacaaacgagcattaatcgaatagtaaatagcagtaagttactatcttactgctatttttattttctatagtttctcgtacttcttcgttttctatcgattttagtcgtgtatttgtaccatatttgtgccgcgacctattagtgtataaagtgcgacttaaataaaaataaaaattgattatcagatagataagaaaagcgtatgccagctgcaaaatttcagattgagcgaaagtgcgaattgtgtggggagacctttcttgccaagacaatcacatcaagatattgttctatacaatgctcaaggtctgcgtattcacaaaagaagcgagaggaaaagttggaagagcttaggcgagagaaggccgcaaaggtttccaaggatcaaccctacctttctatctccgatgctattgccctatacgacgtttgcagagatacgctataccgacttgttagaagtaaggctctccgaagttataacttgggaaaaaggatgactcgcatctgtaaagaagatttagaacgcaactttaatctgagacctgttgatgagcaaaagccgagaacaagaagtgaggctaaactttacaaccttgagccagagcattgttacacgatcggtgaaataacaaccaagtttggtgttacagaaggcacggtatataagcatatcagaaaattttccatccccataaggcagattggcaactatgtctatgccccaaaatcagagatagaccaactgtacaaataaccttagatacat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1690:TF1691|TF1690:TF1691:chaperone protein dnaK:integrase:->->:1808782..1809561 780 taatcacgctcacaaacgagcattaatcgaatagtaaatagcagtaagttactatcttactgctatttttattttctatagtttctcgtacttcttcgttttctatcgattttagtcgtgtatttgtaccatatttgtgccgcgacctattagtgtataaagtgcgacttaaataaaaataaaaattgattatcagatagataagaaaagcgtatgccagctgcaaaatttcagattgagcgaaagtgcgaattgtgtggggagacctttcttgccaagacaatcacatcaagatattgttctatacaatgctcaaggtctgcgtattcacaaaagaagcgagaggaaaagttggaagagcttaggcgagagaaggccgcaaaggtttccaaggatcaaccctacctttctatctccgatgctattgccctatacgacgtttgcagagatacgctataccgacttgttagaagtaaggctctccgaagttataacttgggaaaaaggatgactcgcatctgtaaagaagatttagaacgcaactttaatctgagacctgttgatgagcaaaagccgagaacaagaagtgaggctaaactttacaaccttgagccagagcattgttacacgatcggtgaaataacaaccaagtttggtgttacagaaggcacggtatataagcatatcagaaaattttccatccccataaggcagattggcaactatgtctatgccccaaaatcagagatagaccaactgtacaaataaccttagatacat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 10 Min: 232 Max: 762 Len: 531 Subject: gi|29349958|ref|NP_813461.1| putative transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 4.0E-16 bit: 82.0 Len: 531 Query Start:232 Query End:762 Subject Strand: null Subject Start: 2 Subject End: 176 ....................................................................................................................................................................................................................................... Q I E R K C E L C G E T F L A K T I T S R Y C S I Q C S R S A Y S Q X X X X X X X X X X X X X X X X X V S K D - - - - - - Q P Y L S I S D A I A L Y D V C R D T L Y R L V R S K A L R S Y N L G K R M T R I C K E D L E R N F N L R P V D E Q K P R T R S E A K L Y N L E P E H C Y T I G E I T T K F G V T E G T V Y K H I R K F S I P I R Q I G N Y V Y A P K S E I D Q L Y .................. ....................................................................................................................................................................................................................................... E I Q R K C Q W C G K P F I A H T M V T R Y C S K S C N E K A Y K E K K R K Q R L Q E Y E E R Q N E Q P M Q E V G I V G S K L Y L S P A E T A T L L G I S R A T I Y R H M A T G I I R A L Q L R G R - T I I R K S D I E K M F D D A P G Y K K R S Y G R K Q T V L Y - - - - - - - Y T T N E I L E K F Q I Q K K T L Y R R C K L Y N I P K V E E G N R V F Y N R T L I D K Y F .................. Subject: UniRef90_Q89Z27 Cluster: Putative transposase; n=1; Bacteroides thetaiotaomicron|Rep: Putative transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 4.0E-16 bit: 82.0 Len: 531 Query Start:232 Query End:762 Subject Strand: null Subject Start: 2 Subject End: 176 ....................................................................................................................................................................................................................................... Q I E R K C E L C G E T F L A K T I T S R Y C S I Q C S R S A Y S Q X X X X X X X X X X X X X X X X X V S K D - - - - - - Q P Y L S I S D A I A L Y D V C R D T L Y R L V R S K A L R S Y N L G K R M T R I C K E D L E R N F N L R P V D E Q K P R T R S E A K L Y N L E P E H C Y T I G E I T T K F G V T E G T V Y K H I R K F S I P I R Q I G N Y V Y A P K S E I D Q L Y .................. ....................................................................................................................................................................................................................................... E I Q R K C Q W C G K P F I A H T M V T R Y C S K S C N E K A Y K E K K R K Q R L Q E Y E E R Q N E Q P M Q E V G I V G S K L Y L S P A E T A T L L G I S R A T I Y R H M A T G I I R A L Q L R G R - T I I R K S D I E K M F D D A P G Y K K R S Y G R K Q T V L Y - - - - - - - Y T T N E I L E K F Q I Q K K T L Y R R C K L Y N I P K V E E G N R V F Y N R T L I D K Y F .................. Subject: gi|53712461|ref|YP_098453.1| putative transposase [Bacteroides fragilis YCH46] HSP 1 e-value: 1.0E-15 bit: 80.5 Len: 531 Query Start:232 Query End:762 Subject Strand: null Subject Start: 2 Subject End: 176 ....................................................................................................................................................................................................................................... Q I E R K C E L C G E T F L A K T I T S R Y C S I Q C S R S A Y S Q X X X X X X X X X X X X X X X X X V S K D - - - - - - Q P Y L S I S D A I A L Y D V C R D T L Y R L V R S K A L R S Y N L G K R M T R I C K E D L E R N F N L R P V D E Q K P R T R S E A K L Y N L E P E H C Y T I G E I T T K F G V T E G T V Y K H I R K F S I P I R Q I G N Y V Y A P K S E I D Q L Y .................. ....................................................................................................................................................................................................................................... E V Q R K C Q W C G K P F I A H T M V T R F C S K S C T E K A Y K D K K R K Q K L Q E Y E A R Q S E Q P M Q E V G I V G G K P F L S P A E A A T L L G I S R A T I Y R H M A A G I I R A L Q L R G R - T I I R K S D I E K M F D N A P D Y K K R S Y G R K Q T V L Y - - - - - - - Y T T N E I L E K Y Q I Q K K T L Y R R C K L Y N I P K V E E G S R V F Y N R T L I D K Y F .................. Subject: UniRef90_Q64X57 Cluster: Putative transposase; n=1; Bacteroides fragilis|Rep: Putative transposase - Bacteroides fragilis HSP 1 e-value: 1.0E-15 bit: 80.5 Len: 531 Query Start:232 Query End:762 Subject Strand: null Subject Start: 2 Subject End: 176 ....................................................................................................................................................................................................................................... Q I E R K C E L C G E T F L A K T I T S R Y C S I Q C S R S A Y S Q X X X X X X X X X X X X X X X X X V S K D - - - - - - Q P Y L S I S D A I A L Y D V C R D T L Y R L V R S K A L R S Y N L G K R M T R I C K E D L E R N F N L R P V D E Q K P R T R S E A K L Y N L E P E H C Y T I G E I T T K F G V T E G T V Y K H I R K F S I P I R Q I G N Y V Y A P K S E I D Q L Y .................. ....................................................................................................................................................................................................................................... E V Q R K C Q W C G K P F I A H T M V T R F C S K S C T E K A Y K D K K R K Q K L Q E Y E A R Q S E Q P M Q E V G I V G G K P F L S P A E A A T L L G I S R A T I Y R H M A A G I I R A L Q L R G R - T I I R K S D I E K M F D N A P D Y K K R S Y G R K Q T V L Y - - - - - - - Y T T N E I L E K Y Q I Q K K T L Y R R C K L Y N I P K V E E G S R V F Y N R T L I D K Y F .................. Subject: gi|60680663|ref|YP_210807.1| putative transposase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 4.0E-13 bit: 72.0 Len: 531 Query Start:232 Query End:762 Subject Strand: null Subject Start: 2 Subject End: 174 ....................................................................................................................................................................................................................................... Q I E R K C E L C G E T F L A K T I T S R Y C S I Q C S R S A Y S Q X X X X X X X X X X X X X X X X X V S - - - K D Q P Y L S I S D A I A L Y D V C R D T L Y R L V R S K A L R S Y N L G K R M T R I C K E D L E R N F N L R P V D E Q K P R T R S E A K L Y N L E P E H C Y T I G E I T T K F G V T E G T V Y K H I R K F S I P I R Q I G N Y V Y A P K S E I D Q L Y .................. ....................................................................................................................................................................................................................................... E V K R I C Q W C G K P F I A Q K T T T C Y C S P Q C S K R G Y K H R I K E R K M E L R H I Q E M Q E L R S S L E K Q E Y F T F S Q A A R L M G V S R Q Y I Y K L V K E D K L R A S R I S G R M A L V R R A D I E L M L K S K P Y E R L V A K N D F N I S E Y - - - - - - - Y T A E E I A E K Y K V N A K W V W T Y T R Q H K V P K V R I R Q F N Y Y S K K H I D A A F .................. Subject: UniRef90_Q5LG81 Cluster: Putative transposase; n=1; Bacteroides fragilis NCTC 9343|Rep: Putative transposase - Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) HSP 1 e-value: 4.0E-13 bit: 72.0 Len: 531 Query Start:232 Query End:762 Subject Strand: null Subject Start: 2 Subject End: 174 ....................................................................................................................................................................................................................................... Q I E R K C E L C G E T F L A K T I T S R Y C S I Q C S R S A Y S Q X X X X X X X X X X X X X X X X X V S - - - K D Q P Y L S I S D A I A L Y D V C R D T L Y R L V R S K A L R S Y N L G K R M T R I C K E D L E R N F N L R P V D E Q K P R T R S E A K L Y N L E P E H C Y T I G E I T T K F G V T E G T V Y K H I R K F S I P I R Q I G N Y V Y A P K S E I D Q L Y .................. ....................................................................................................................................................................................................................................... E V K R I C Q W C G K P F I A Q K T T T C Y C S P Q C S K R G Y K H R I K E R K M E L R H I Q E M Q E L R S S L E K Q E Y F T F S Q A A R L M G V S R Q Y I Y K L V K E D K L R A S R I S G R M A L V R R A D I E L M L K S K P Y E R L V A K N D F N I S E Y - - - - - - - Y T A E E I A E K Y K V N A K W V W T Y T R Q H K V P K V R I R Q F N Y Y S K K H I D A A F .................. Subject: gi|29345644|ref|NP_809147.1| putative transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 6.0E-11 bit: 64.7 Len: 522 Query Start:241 Query End:762 Subject Strand: null Subject Start: 5 Subject End: 194 ................................................................................................................................................................................................................................................ R K C E L C G E T F L A K T I T S R Y C S I Q C S R S A Y S Q X X X X X X X X X X X X X X X X X V S K D Q P Y L S I S D A I A L Y D V C R D T L Y R L V R S K A L R S Y N L G K R M T R I C K E D L E R N F N L R P V D E Q K P R T R S - - - - - - - - E A K L Y N L E P E - - - - - - - - - H C Y T I G E I T T K F G V T E G T V Y K H I R K F S I P I R Q I G N Y V Y A P K S E I D Q L Y .................. ................................................................................................................................................................................................................................................ R K C E F C G K T F V P R S G M Q K Y C S E E C Q A E T K R L R K K R Q Q D L I N G I E P I M D L - Q H Q E Y L T F S K A A I L M G C T R Q Y I Y K L V A N G K L K A S R L S S R M A F V R K A D I E K M F E G H P Y K R V V P A S K S K L S K K A K A E K P T Q N Q E P T K G K E E N D V L D Y Y S G E E V M S I Y K V K K S W L Y T S A K R N Q I P M C R I A G K N Y Y S K R H I D E F F .................. Subject: UniRef90_Q8AB76 Cluster: Putative transposase; n=1; Bacteroides thetaiotaomicron|Rep: Putative transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 6.0E-11 bit: 64.7 Len: 522 Query Start:241 Query End:762 Subject Strand: null Subject Start: 5 Subject End: 194 ................................................................................................................................................................................................................................................ R K C E L C G E T F L A K T I T S R Y C S I Q C S R S A Y S Q X X X X X X X X X X X X X X X X X V S K D Q P Y L S I S D A I A L Y D V C R D T L Y R L V R S K A L R S Y N L G K R M T R I C K E D L E R N F N L R P V D E Q K P R T R S - - - - - - - - E A K L Y N L E P E - - - - - - - - - H C Y T I G E I T T K F G V T E G T V Y K H I R K F S I P I R Q I G N Y V Y A P K S E I D Q L Y .................. ................................................................................................................................................................................................................................................ R K C E F C G K T F V P R S G M Q K Y C S E E C Q A E T K R L R K K R Q Q D L I N G I E P I M D L - Q H Q E Y L T F S K A A I L M G C T R Q Y I Y K L V A N G K L K A S R L S S R M A F V R K A D I E K M F E G H P Y K R V V P A S K S K L S K K A K A E K P T Q N Q E P T K G K E E N D V L D Y Y S G E E V M S I Y K V K K S W L Y T S A K R N Q I P M C R I A G K N Y Y S K R H I D E F F .................. Subject: gi|29347354|ref|NP_810857.1| putative transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 3.0E-6 bit: 49.3 Len: 345 Query Start:241 Query End:585 Subject Strand: null Subject Start: 5 Subject End: 118 ................................................................................................................................................................................................................................................ R K C E L C G E T F L A K T I T S R Y C S I Q C S R S A Y S Q X X X X X X X X X X X X X X X X X V S K D Q P Y L S I S D A I A L Y D V C R D T L Y R L V R S K A L R S Y N L G K R M T R I C K E D L E R N F N L R P V D E Q K P R T R ................................................................................................................................................................................................... ................................................................................................................................................................................................................................................ K K C A F C G R M F T P N S G M Q K Y C T V H C A D E A K K A K K K R Q Q D L L N A V E P V L E I Q R - Q E Y L T F S K A A I L M G C S R Q Y I Y K L V A Q G R L R A S R I S N R M A F I R R A D I E K M L E D N P Y N R V I P G S R ................................................................................................................................................................................................... Subject: UniRef90_Q8A6E0 Cluster: Putative transposase; n=1; Bacteroides thetaiotaomicron|Rep: Putative transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 3.0E-6 bit: 49.3 Len: 345 Query Start:241 Query End:585 Subject Strand: null Subject Start: 5 Subject End: 118 ................................................................................................................................................................................................................................................ R K C E L C G E T F L A K T I T S R Y C S I Q C S R S A Y S Q X X X X X X X X X X X X X X X X X V S K D Q P Y L S I S D A I A L Y D V C R D T L Y R L V R S K A L R S Y N L G K R M T R I C K E D L E R N F N L R P V D E Q K P R T R ................................................................................................................................................................................................... ................................................................................................................................................................................................................................................ K K C A F C G R M F T P N S G M Q K Y C T V H C A D E A K K A K K K R Q Q D L L N A V E P V L E I Q R - Q E Y L T F S K A A I L M G C S R Q Y I Y K L V A Q G R L R A S R I S N R M A F I R R A D I E K M L E D N P Y N R V I P G S R ................................................................................................................................................................................................... Find nr database================================================ Query_seq: TF1690:TF1691|TF1690:TF1691:chaperone protein dnaK:integrase:->->:1808782..1809561 780 taatcacgctcacaaacgagcattaatcgaatagtaaatagcagtaagttactatcttactgctatttttattttctatagtttctcgtacttcttcgttttctatcgattttagtcgtgtatttgtaccatatttgtgccgcgacctattagtgtataaagtgcgacttaaataaaaataaaaattgattatcagatagataagaaaagcgtatgccagctgcaaaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataaccttagatacat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taatcacgctcacaaacgagcattaatcgaatagtaaatagcagtaagttactatcttactgctatttttattttctatagtttctcgtacttcttcgttttctatcgattttagtcgtgtatttgtaccatatttgtgccgcgacctattagtgtataaagtgcgacttaaataaaaataaaaattgattatcagatagataagaaaagcgtatgccagctgcaaaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataaccttagatacat Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 54 End: 173 ..................................................... M L L L F L F S I V S R T S S F S I D F S R V F V P Y L C R D L L V Y K V R L K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 246 End: 362 ..................................................................................................................................................................................................................................................... M R I V W G D L S C Q D N H I K I L F Y T M L K V C V F T K E A R G K V G R A .................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 173 End: 508 ............................................................................................................................................................................ M K I K I D Y Q I D K K S V C Q L Q N F R L S E S A N C V G R P F L P R Q S H Q D I V L Y N A Q G L R I H K R S E R K S ................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 214 End: 765 ..................................................................................................................................................................................................................... M P A A K F Q I E R K C E L C G E T F L A K T I T S R Y C S I Q C S R S A Y S Q K K R E E K L E E L R R E K A A K V S K ............... Protein_Len: 32 Strand: - Start: 627 End: 722 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. V I P S I V V L N P T V S P V T Y L C I L F N E M G M L C I P M .......................................................... Protein_Len: 60 Strand: - Start: 535 End: 732 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S R N I L L L R S C S T L S F K V V K L W L M T V R D T F Y C G L K T N C F A R Y I L M D S F K G D G Y P L N A V I D M ................................................ Protein_Len: 30 Strand: - Start: 331 End: 420 .......................................................................................................................................................................................................................................................................................................................................... L L L S L F L Q F L K P S L L G C L N G L I L G V K R D G M ........................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 53 Strand: - Start: 234 End: 392 ......................................................................................................................................................................................................................................... I S R F H S N H P S V K R A L V I V D L Y Q E I C H E L D A Y E C F F R S S F N S S S L R S F A A F T E M .................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 26 End: 283 ......................... I S K L R T N T G Y K H R S R N T Y L T R S L Y F Y F N I I L Y I L F A Y A L Q L I E S Q A F T R I T H P S R E Q W S M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. taatcacgctcacaaacgagcattaatcgaatagtaaatagcagtaagttactatcttactgctatttttattttctatagtttctcgtacttcttcgttttctatcgattttagtcgtgtatttgtaccatatttgtgccgcgacctattagtgtataaagtgcgacttaaataaaaataaaaattgattatcagatagataagaaaagcgtatgccagctgcaaaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataaccttagatacat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taatcacgctcacaaacgagcattaatcgaatagtaaatagcagtaagttactatcttactgctatttttattttctatagtttctcgtacttcttcgttttctatcgattttagtcgtgtatttgtaccatatttgtgccgcgacctattagtgtataaagtgcgacttaaataaaaataaaaattgattatcagatagataagaaaagcgtatgccagctgcaaaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataaccttagatacat Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -11.0 Tail_Score: -5.58522 Start: 39 End: 65 Full_Region: TAATCGAATAGTAAA TAGCAGTAAGTT ACT ATCTTACTGCTA TTTTTATTTTCTATA ......................................TAGCAGTAAGTTACTATCTTACTGCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 86 HP_score: -11.0 Tail_Score: -3.94853 Start: 39 End: 65 Full_Region: tatagaaaataaaaa tagcagtaagat agt aacttactgcta tttactattcgatta ......................................tagcagtaagatagtaacttactgcta........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TF1690:TF1691|TF1690:TF1691:chaperone protein dnaK:integrase:->->:1808782..1809561 780 taatcacgctcacaaacgagcattaatcgaatagtaaatagcagtaagttactatcttactgctatttttattttctatagtttctcgtacttcttcgttttctatcgattttagtcgtgtatttgtaccatatttgtgccgcgacctattagtgtataaagtgcgacttaaataaaaataaaaattgattatcagatagataagaaaagcgtatgccagctgcaaaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataaccttagatacat Intra-Species Hit: Count: 1 Min: 1 Max: 231 Len: 231 Subject: tfor_TF1690_TF1691|chaperone protein dnaK:integrase|POSITIVE:POSITIVE|[1808782,1809561]|780 HSP 1 e-value: 1.0E-127 bit: 458.0 Len: 231 Query Start:1 Query End:231 Subject Strand: POSITIVE Subject Start: 1 Subject End: 231 taatcacgctcacaaacgagcattaatcgaatagtaaatagcagtaagttactatcttactgctatttttattttctatagtttctcgtacttcttcgttttctatcgattttagtcgtgtatttgtaccatatttgtgccgcgacctattagtgtataaagtgcgacttaaataaaaataaaaattgattatcagatagataagaaaagcgtatgccagctgcaaaattt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taatcacgctcacaaacgagcattaatcgaatagtaaatagcagtaagttactatcttactgctatttttattttctatagtttctcgtacttcttcgttttctatcgattttagtcgtgtatttgtaccatatttgtgccgcgacctattagtgtataaagtgcgacttaaataaaaataaaaattgattatcagatagataagaaaagcgtatgccagctgcaaaattt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUCACGCUCACAAACGAGCAUUAAUCGAAUAGUAAAUAGCAGUAAGUUACUAUCUUACUGCUAUUUUUAUUUUCUAUAGUUUCUCGUACUUCUUCGUUUUCUAUCGAUUUUAGUCGUGUAUUUGUACCAUAUUUGUGCCGCGACCUAUUAGUGUAUAAAGUGCGACUUAAAUAAAAAUAAAAAUUGAUUAUCAGAUAGAUAAGAAAAGCGUAUGCCAGCUGCAAAAUUU .......((((......)))).......((((((.(((((((((((((.......)))))))))))))))))))....(((((...(((((((.(((....((((((.((((.(((((..(.((((((((..((..((......))..))..).))))))))..))))).))))............((.....))))))))...))).)).)))))..)))))........ (-51.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAUUUUGCAGCUGGCAUACGCUUUUCUUAUCUAUCUGAUAAUCAAUUUUUAUUUUUAUUUAAGUCGCACUUUAUACACUAAUAGGUCGCGGCACAAAUAUGGUACAAAUACACGACUAAAAUCGAUAGAAAACGAAGAAGUACGAGAAACUAUAGAAAAUAAAAAUAGCAGUAAGAUAGUAACUUACUGCUAUUUACUAUUCGAUUAAUGCUCGUUUGUGAGCGUGAUUA .....(..(.(((.(((.....(((((((.((((((.(((.......................(((((((((...........)))).))))).......((((.(........)))))..))))))))).)).)))))...(((((........(((.....(((((((((((((.......)))))))))))))....)))........))))).))).))))..)... (-51.49) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 357 108 61 63 13 tfor:TF1061|5end_glycosyltransferase_1130264..1130494_POSITIVE 316 159 115 90 43 tfor:TF1263|5end_DNA-mismatch_repair_protein_1348664..1348894_POSITIVE 308 165 125 228 182 tfor:TF3001|5end_transposase_3216491..3216721_POSITIVE 308 165 125 149 103 tfor:TF3000|5end_hypothetical_protein_3216412..3216642_POSITIVE 292 148 106 136 101 tfor:TF2489|5end_hypothetical_protein_2664418..2664648_POSITIVE 292 168 123 166 126 tfor:TF0660|5end_conserved_hypothetical_protein_706009..706239_POSITIVE 291 228 184 54 5 tfor:TF1742|5end_TPR_repeat-containing_protein_1873129..1873359_POSITIVE 287 159 112 142 91 tfor:TF2825|5end_transposase_3016390..3016620_POSITIVE 287 159 112 142 91 tfor:TF2591|5end_transposase_2757641..2757871_POSITIVE 287 159 112 142 91 tfor:TF2110|5end_transposase_2279217..2279447_POSITIVE 287 159 112 142 91 tfor:TF0942|5end_transposase_982998..983228_POSITIVE 287 159 112 142 91 tfor:TF0716|5end_transposase_766297..766527_POSITIVE 283 140 94 106 61 tfor:TF2483|5end_hypothetical_protein_2659685..2659915_POSITIVE 277 108 61 202 142 tfor:TF2786|5end_hypothetical_protein_2969851..2970081_POSITIVE 275 143 103 229 185 tfor:TF2634|5end_conserved_hypothetical_protein_2803844..2804074_POSITIVE 271 158 115 219 171 tfor:TF1274|5end_hypothetical_protein_1357621..1357851_POSITIVE 270 167 129 63 29 tfor:TF0960|5end_beta-galactosidase_1008618..1008848_POSITIVE 269 147 102 201 147 tfor:TF0425|5end_outer_membrane_protein_443069..443299_POSITIVE 268 167 126 189 147 tfor:TF2551|5end_30S_ribosomal_protein_S10_2734433..2734663_POSITIVE 266 137 91 61 2 tfor:TF1966|5end_conserved_hypothetical_protein_2114989..2115219_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 342 108 81 36 6 tfor:TF1059|3end_possible_xanthan_lyase_1130317..1130467_POSITIVE 325 145 102 118 79 tfor:TF2487|3end_transposase_2663956..2664106_POSITIVE 292 148 106 116 81 tfor:TF2488|3end_hypothetical_protein_2664478..2664628_POSITIVE 292 168 123 142 102 tfor:TF0659|3end_RNA_polymerase,_ECF-type_sigma_factor_706065..706215_POSITIVE 284 68 36 55 23 tfor:TF1690|3end_chaperone_protein_dnaK_1808721..1808871_POSITIVE 275 143 103 146 102 tfor:TF2633|3end_ABC_transporter,_ATP-binding_protein/permease_component_2803841..2803991_POSITIVE 271 158 115 82 34 tfor:TF2047|3end_hypothetical_protein_2210298..2210448_POSITIVE 262 171 134 46 4 tfor:TF0037|3end_sialic_acid-specific_9-O-acetylesterase_39991..40141_POSITIVE 259 158 115 82 34 tfor:TF0339|3end_hypothetical_protein_363747..363897_POSITIVE 257 126 86 99 58 tfor:TF0940|3end_transposase_982040..982190_POSITIVE 255 121 83 44 8 tfor:TF3004|3end_phosphoribosylformylglycinamidine_(FGAM)_synthase_3224576..3224726_POSITIVE 252 126 83 71 17 tfor:TF0583|3end_possible_gliding_motility-related_protein_613829..613979_POSITIVE 249 128 84 52 10 tfor:TF1602|3end_L-aspartate_oxidase_1717224..1717374_POSITIVE 244 145 101 129 79 tfor:TF1927|3end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_2075602..2075752_POSITIVE 243 167 128 34 1 tfor:TF2356|3end_PAP2_superfamily_protein_2522409..2522559_POSITIVE 241 120 79 143 100 tfor:TF1928|3end_conserved_hypothetical_protein_2076124..2076274_POSITIVE 240 103 61 103 56 tfor:TF2935|3end_possible_recombinase_3138587..3138737_POSITIVE 240 108 78 35 10 tfor:TF1456|3end_GMP_synthase_1543287..1543437_POSITIVE 239 157 116 53 23 tfor:TF1237|3end_possible_L-fuculose_kinase_1323599..1323749_POSITIVE 239 144 104 150 114 tfor:TF0686|3end_hypothetical_protein_732950..733100_POSITIVE