Origin IGS: ttcaatgacttttaaaaaagaaccaactctttataactccttgattataagcacttatacaattaaaagggttatgatttaatcagtattcaaatgaattccactgatttactaacgtttcaaacaacttttgttttcaatgcaaagataggtaaaatatgctgtcctgccaaagaaaacaattgtttttttctttggcaggacaaacttttcaatataatttctgagagttaatttccttctggaattctccttttctttgacaaaaacaagttacaccctctgctttcataaacttttgctatcaggcacaaatcattcttacttttagcatgatcgacagcgaaaagatattggggtcagtctataaaaaatcagcaaacctgctttctaccacattgctatggtgtctattcatagttcttggggatggaattctacaagacattttttttagtatatttctttttctatattttcttttcttgaaagcagtttaaaagtcacatcgcttgtcgcgggcggcttttacacgcccgctttattacgactttccacatctatctgtctgatacaatcagatttttacttcttatccgaatcagactctttaccgcatcacatccattaaccgttcccattcaggcgcaaaggtaattcagaaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttttctgaattacctttgcgcctgaatgggaacggttaatggatgtgatgcggtaaagagtctgattcggataagaagtaaaaatctgattgtatcagacagatagatgtggaaagtcgtaataaagcgggcgtgtaaaagccgcccgcgacaagcgatgtgacttttaaactgctttcaagaaaagaaaatatagaaaaagaaatatactaaaaaaaatgtcttgtagaattccatccccaagaactatgaatagacaccatagcaatgtggtagaaagcaggtttgctgattttttatagactgaccccaatatcttttcgctgtcgatcatgctaaaagtaagaatgatttgtgcctgatagcaaaagtttatgaaagcagagggtgtaacttgtttttgtcaaagaaaaggagaattccagaaggaaattaactctcagaaattatattgaaaagtttgtcctgccaaagaaaaaaacaattgttttctttggcaggacagcatattttacctatctttgcattgaaaacaaaagttgtttgaaacgttagtaaatcagtggaattcatttgaatactgattaaatcataacccttttaattgtataagtgcttataatcaaggagttataaagagttggttcttttttaaaagtcattgaa Mask Tandem Repeat Region ================================================ ttcaatgacttttaaaaaagaaccaactctttataactccttgattataagcacttatacaattaaaagggttatgatttaatcagtattcaaatgaattccactgatttactaacgtttcaaacaacttttgttttcaatgcaaagataggtaaaatatgctgtcctgccaaagaaaacaattgtttttttctttggcaggacaaacttttcaatataatttctgagagttaatttccttctggaattctccttttctttgacaaaaacaagttacaccctctgctttcataaacttttgctatcaggcacaaatcattcttacttttagcatgatcgacagcgaaaagatattggggtcagtctataaaaaatcagcaaacctgctttctaccacattgctatggtgtctattcatagttcttggggatggaattctacaagacattttttttagtatatttctttttctatattttcttttcttgaaagcagtttaaaagtcacatcgcttgtcgcgggcggcttttacacgcccgctttattacgactttccacatctatctgtctgatacaatcagatttttacttcttatccgaatcagactctttaccgcatcacatccattaaccgttcccattcaggcgcaaaggtaattcagaaaa Find is-nt database================================================ Query_seq: TF1647:TF1648|TF1647:TF1648:cytosine-specific methyltransferase:hypothetical protein:->->:1758812..1759477 666 ttcaatgacttttaaaaaagaaccaactctttataactccttgattataagcacttatacaattaaaagggttatgatttaatcagtattcaaatgaattccactgatttactaacgtttcaaacaacttttgttttcaatgcaaagataggtaaaatatgctgtcctgccaaagaaaacaattgtttttttctttggcaggacaaacttttcaatataatttctgagagttaatttccttctggaattctccttttctttgacaaaaacaagttacaccctctgctttcataaacttttgctatcaggcacaaatcattcttacttttagcatgatcgacagcgaaaagatattggggtcagtctataaaaaatcagcaaacctgctttctaccacattgctatggtgtctattcatagttcttggggatggaattctacaagacattttttttagtatatttctttttctatattttcttttcttgaaagcagtttaaaagtcacatcgcttgtcgcgggcggcttttacacgcccgctttattacgactttccacatctatctgtctgatacaatcagatttttacttcttatccgaatcagactctttaccgcatcacatccattaaccgttcccattcaggcgcaaaggtaattcagaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1647:TF1648|TF1647:TF1648:cytosine-specific methyltransferase:hypothetical protein:->->:1758812..1759477 666 ttcaatgacttttaaaaaagaaccaactctttataactccttgattataagcacttatacaattaaaagggttatgatttaatcagtattcaaatgaattccactgatttactaacgtttcaaacaacttttgttttcaatgcaaagataggtaaaatatgctgtcctgccaaagaaaacaattgtttttttctttggcaggacaaacttttcaatataatttctgagagttaatttccttctggaattctccttttctttgacaaaaacaagttacaccctctgctttcataaacttttgctatcaggcacaaatcattcttacttttagcatgatcgacagcgaaaagatattggggtcagtctataaaaaatcagcaaacctgctttctaccacattgctatggtgtctattcatagttcttggggatggaattctacaagacattttttttagtatatttctttttctatattttcttttcttgaaagcagtttaaaagtcacatcgcttgtcgcgggcggcttttacacgcccgctttattacgactttccacatctatctgtctgatacaatcagatttttacttcttatccgaatcagactctttaccgcatcacatccattaaccgttcccattcaggcgcaaaggtaattcagaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1647:TF1648|TF1647:TF1648:cytosine-specific methyltransferase:hypothetical protein:->->:1758812..1759477 666 ttcaatgacttttaaaaaagaaccaactctttataactccttgattataagcacttatacaattaaaagggttatgatttaatcagtattcaaatgaattccactgatttactaacgtttcaaacaacttttgttttcaatgcaaagataggtaaaatatgctgtcctgccaaagaaaacaattgtttttttctttggcaggacaaacttttcaatataatttctgagagttaatttccttctggaattctccttttctttgacaaaaacaagttacaccctctgctttcataaacttttgctatcaggcacaaatcattcttacttttagcatgatcgacagcgaaaagatattggggtcagtctataaaaaatcagcaaacctgctttctaccacattgctatggtgtctattcatagttcttggggatggaattctacaagacattttttttagtatatttctttttctatattttcttttcttgaaagcagtttaaaagtcacatcgcttgtcgcgggcggcttttacacgcccgctttattacgactttccacatctatctgtctgatacaatcagatttttacttcttatccgaatcagactctttaccgcatcacatccattaaccgttcccattcaggcgcaaaggtaattcagaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttcaatgacttttaaaaaagaaccaactctttataactccttgattataagcacttatacaattaaaagggttatgatttaatcagtattcaaatgaattccactgatttactaacgtttcaaacaacttttgttttcaatgcaaagataggtaaaatatgctgtcctgccaaagaaaacaattgtttttttctttggcaggacaaacttttcaatataatttctgagagttaatttccttctggaattctccttttctttgacaaaaacaagttacaccctctgctttcataaacttttgctatcaggcacaaatcattcttacttttagcatgatcgacagcgaaaagatattggggtcagtctataaaaaatcagcaaacctgctttctaccacattgctatggtgtctattcatagttcttggggatggaattctacaagacattttttttagtatatttctttttctatattttcttttcttgaaagcagtttaaaagtcacatcgcttgtcgcgggcggcttttacacgcccgctttattacgactttccacatctatctgtctgatacaatcagatttttacttcttatccgaatcagactctttaccgcatcacatccattaaccgttcccattcaggcgcaaaggtaattcagaaaa Predict ORF larger than 30AA ================================================ Protein_Len: 50 Strand: + Start: 82 End: 231 ................................................................................. M S I Q M N S T D L L T F Q T T F V F N A K I G K I C C P A K E N N C F F L W Q D K L F N I I S E S ................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 224 End: 328 ............................................................................................................................................................................................................................... M R V N F L L E F S F S L T K T S Y T L C F H K L L L S G T N H S Y F .................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 291 End: 497 .................................................................................................................................................................................................................................................................................................. M N F C Y Q A Q I I L T F S M I D S E K I L G S V Y K K S A N L L S T T L L W C L F I V L G D G I L Q D I F F S I F L F ......................................................................................................................................................................... Protein_Len: 56 Strand: + Start: 461 End: 628 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M S F S I F S F L E S S L K V T S L V A G G F Y T P A L L R L S T S I C L I Q S D F Y F L S E S D S L P H H I H ...................................... Protein_Len: 49 Strand: + Start: 508 End: 654 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A C R G R L L H A R F I T T F H I Y L S D T I R F L L L I R I R L F T A S H P L T V P I Q A Q R ............ Protein_Len: 31 Strand: - Start: 368 End: 460 ............................................................................................................................................................................................................................................................................................................................................................................... L F D A F R S E V V N S H H R N M T R P S P I R C S M K K L M .............................................................................................................................................................................................................. Protein_Len: 33 Strand: - Start: 123 End: 221 .......................................................................................................................... V V K T K L A F I P L I H Q G A L S F L Q K K R Q C S L S K L I M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 34 Strand: - Start: 115 End: 216 .................................................................................................................. R K L C S K N E I C L Y T F Y A T R G F F V I T K K K P L V F K E M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ttcaatgacttttaaaaaagaaccaactctttataactccttgattataagcacttatacaattaaaagggttatgatttaatcagtattcaaatgaattccactgatttactaacgtttcaaacaacttttgttttcaatgcaaagataggtaaaatatgctgtcctgccaaagaaaacaattgtttttttctttggcaggacaaacttttcaatataatttctgagagttaatttccttctggaattctccttttctttgacaaaaacaagttacaccctctgctttcataaacttttgctatcaggcacaaatcattcttacttttagcatgatcgacagcgaaaagatattggggtcagtctataaaaaatcagcaaacctgctttctaccacattgctatggtgtctattcatagttcttggggatggaattctacaagacattttttttagtatatttctttttctatattttcttttcttgaaagcagtttaaaagtcacatcgcttgtcgcgggcggcttttacacgcccgctttattacgactttccacatctatctgtctgatacaatcagatttttacttcttatccgaatcagactctttaccgcatcacatccattaaccgttcccattcaggcgcaaaggtaattcagaaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttcaatgacttttaaaaaagaaccaactctttataactccttgattataagcacttatacaattaaaagggttatgatttaatcagtattcaaatgaattccactgatttactaacgtttcaaacaacttttgttttcaatgcaaagataggtaaaatatgctgtcctgccaaagaaaacaattgtttttttctttggcaggacaaacttttcaatataatttctgagagttaatttccttctggaattctccttttctttgacaaaaacaagttacaccctctgctttcataaacttttgctatcaggcacaaatcattcttacttttagcatgatcgacagcgaaaagatattggggtcagtctataaaaaatcagcaaacctgctttctaccacattgctatggtgtctattcatagttcttggggatggaattctacaagacattttttttagtatatttctttttctatattttcttttcttgaaagcagtttaaaagtcacatcgcttgtcgcgggcggcttttacacgcccgctttattacgactttccacatctatctgtctgatacaatcagatttttacttcttatccgaatcagactctttaccgcatcacatccattaaccgttcccattcaggcgcaaaggtaattcagaaaa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -11.5 Tail_Score: -4.29981 Start: 158 End: 210 Full_Region: agaaattatattgaa aagtttgtcctgccaaagaaaaaaa caa ttgttttctttggcaggacagcata ttttacctatctttg .............................................................................................................................................................aagtttgtcctgccaaagaaaaaaacaattgttttctttggcaggacagcata........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -16.0 Tail_Score: -3.73587 Start: 160 End: 207 Full_Region: aattatattgaaaag tttgtcctgccaaagaaaaaaa caa ttgttttctttggcaggacagca tattttacctatctt ...............................................................................................................................................................tttgtcctgccaaagaaaaaaacaattgttttctttggcaggacagca........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -15.4 Tail_Score: -3.14888 Start: 161 End: 207 Full_Region: AGATAGGTAAAATAT GCTGTCCTGCCAAAGAAAACAA TTG TTTTTTTCTTTGGCAGGACAAA CTTTTCAATATAATT ................................................................................................................................................................GCTGTCCTGCCAAAGAAAACAATTGTTTTTTTCTTTGGCAGGACAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -15.2 Tail_Score: -4.26622 Start: 161 End: 208 Full_Region: AGATAGGTAAAATAT GCTGTCCTGCCAAAGAAAACAA TTG TTTTTTTCTTTGGCAGGACAAAC TTTTCAATATAATTT ................................................................................................................................................................GCTGTCCTGCCAAAGAAAACAATTGTTTTTTTCTTTGGCAGGACAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -17.6 Tail_Score: -2.83068 Start: 161 End: 207 Full_Region: aattatattgaaaag tttgtcctgccaaagaaaaaaa caa ttgttttctttggcaggacagc atattttacctatct ................................................................................................................................................................tttgtcctgccaaagaaaaaaacaattgttttctttggcaggacagc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 89 HP_score: -9.1 Tail_Score: -4.19371 Start: 518 End: 540 Full_Region: GTCACATCGCTTGTC GCGGGCG GCTTTTACA CGCCCGC TTTATTACGACTTTC .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGCGGCTTTTACACGCCCGC.............................................................................................................................. TransTerm Strand: + Conf: 88 HP_score: -7.2 Tail_Score: -5.01845 Start: 568 End: 582 Full_Region: TTCCACATCTATCTG TCTGAT ACA ATCAGA TTTTTACTTCTTATC .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATACAATCAGA.................................................................................... Find igs database================================================ Query_seq: TF1647:TF1648|TF1647:TF1648:cytosine-specific methyltransferase:hypothetical protein:->->:1758812..1759477 666 ttcaatgacttttaaaaaagaaccaactctttataactccttgattataagcacttatacaattaaaagggttatgatttaatcagtattcaaatgaattccactgatttactaacgtttcaaacaacttttgttttcaatgcaaagataggtaaaatatgctgtcctgccaaagaaaacaattgtttttttctttggcaggacaaacttttcaatataatttctgagagttaatttccttctggaattctccttttctttgacaaaaacaagttacaccctctgctttcataaacttttgctatcaggcacaaatcattcttacttttagcatgatcgacagcgaaaagatattggggtcagtctataaaaaatcagcaaacctgctttctaccacattgctatggtgtctattcatagttcttggggatggaattctacaagacattttttttagtatatttctttttctatattttcttttcttgaaagcagtttaaaagtcacatcgcttgtcgcgggcggcttttacacgcccgctttattacgactttccacatctatctgtctgatacaatcagatttttacttcttatccgaatcagactctttaccgcatcacatccattaaccgttcccattcaggcgcaaaggtaattcagaaaa Intra-Species Hit: Count: 1 Min: 1 Max: 666 Len: 666 Subject: tfor_TF1647_TF1648|cytosine-specific methyltransferase:hypothetical protein|POSITIVE:POSITIVE|[1758812,1759477]|666 HSP 1 e-value: 0.0 bit: 844.0 Len: 447 Query Start:1 Query End:447 Subject Strand: POSITIVE Subject Start: 1 Subject End: 447 ttcaatgacttttaaaaaagaaccaactctttataactccttgattataagcacttatacaattaaaagggttatgatttaatcagtattcaaatgaattccactgatttactaacgtttcaaacaacttttgttttcaatgcaaagataggtaaaatatgctgtcctgccaaagaaaacaattgnnnnnnnctttggcaggacaaacttttcaatataatttctgagagttaatttccttctggaattctccttttctttgacaaaaacaagttacaccctctgctttcataaacttttgctatcaggcacaaatcattcttacttttagcatgatcgacagcgaaaagatattggggtcagtctataaaaaatcagcaaacctgctttctaccacattgctatggtgtctattcatagttcttggggatggaattctacaagaca........................................................................................................................................................................................................................... ttcaatgacttttaaaaaagaaccaactctttataactccttgattataagcacttatacaattaaaagggttatgatttaatcagtattcaaatgaattccactgatttactaacgtttcaaacaacttttgttttcaatgcaaagataggtaaaatatgctgtcctgccaaagaaaacaattgtttttttctttggcaggacaaacttttcaatataatttctgagagttaatttccttctggaattctccttttctttgacaaaaacaagttacaccctctgctttcataaacttttgctatcaggcacaaatcattcttacttttagcatgatcgacagcgaaaagatattggggtcagtctataaaaaatcagcaaacctgctttctaccacattgctatggtgtctattcatagttcttggggatggaattctacaagaca........................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-97 bit: 357.0 Len: 180 Query Start:487 Query End:666 Subject Strand: POSITIVE Subject Start: 487 Subject End: 666 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgaaagcagtttaaaagtcacatcgcttgtcgcgggcggcttttacacgcccgctttattacgactttccacatctatctgtctgatacaatcagatttttacttcttatccgaatcagactctttaccgcatcacatccattaaccgttcccattcaggcgcaaaggtaattcagaaaa ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgaaagcagtttaaaagtcacatcgcttgtcgcgggcggcttttacacgcccgctttattacgactttccacatctatctgtctgatacaatcagatttttacttcttatccgaatcagactctttaccgcatcacatccattaaccgttcccattcaggcgcaaaggtaattcagaaaa Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCAAUGACUUUUAAAAAAGAACCAACUCUUUAUAACUCCUUGAUUAUAAGCACUUAUACAAUUAAAAGGGUUAUGAUUUAAUCAGUAUUCAAAUGAAUUCCACUGAUUUACUAACGUUUCAAACAACUUUUGUUUUCAAUGCAAAGAUAGGUAAAAUAUGCUGUCCUGCCAAAGAAAACAAUUGUUUUUUUCUUUGGCAGGACAAACUUUUCAAUAUAAUUUCUGAGAGUUAAUUUCCUUCUGGAAUUCUCCUUUUCUUUGACAAAAACAAGUUACACCCUCUGCUUUCAUAAACUUUUGCUAUCAGGCACAAAUCAUUCUUACUUUUAGCAUGAUCGACAGCGAAAAGAUAUUGGGGUCAGUCUAUAAAAAAUCAGCAAACCUGCUUUCUACCACAUUGCUAUGGUGUCUAUUCAUAGUUCUUGGGGAUGGAAUUCUACAAGACAUUUUUUUUAGUAUAUUUCUUUUUCUAUAUUUUCUUUUCUUGAAAGCAGUUUAAAAGUCACAUCGCUUGUCGCGGGCGGCUUUUACACGCCCGCUUUAUUACGACUUUCCACAUCUAUCUGUCUGAUACAAUCAGAUUUUUACUUCUUAUCCGAAUCAGACUCUUUACCGCAUCACAUCCAUUAACCGUUCCCAUUCAGGCGCAAAGGUAAUUCAGAAAA (((..(((((((((((...(((.(......(((((((((.((((((((((....)))))..)))))..)))))))))...(((((((((((....))))...))))))).......).)))..........(((((((((.(.(((((((((..(((((((((((((((((((((((((.........)))))))))))))))).....(..((((((..((((.((((((.....(((....)))))))))........((((........))))........(((.((.........((((....))))...(((((.((.......)).))))).)).)))))))..))))))..)...((((..........((((....))))(((((((.((..(((((((.......)))))))...)).)).))))).......)))).........))))))))).....)))).....))))).)))))))))).)))))))))))...((((((..(((((((.........)))))))..........................(((((((.(.((.(((........))).))..).)))))))...................................)))))).............))).. (-149.70) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUCUGAAUUACCUUUGCGCCUGAAUGGGAACGGUUAAUGGAUGUGAUGCGGUAAAGAGUCUGAUUCGGAUAAGAAGUAAAAAUCUGAUUGUAUCAGACAGAUAGAUGUGGAAAGUCGUAAUAAAGCGGGCGUGUAAAAGCCGCCCGCGACAAGCGAUGUGACUUUUAAACUGCUUUCAAGAAAAGAAAAUAUAGAAAAAGAAAUAUACUAAAAAAAAUGUCUUGUAGAAUUCCAUCCCCAAGAACUAUGAAUAGACACCAUAGCAAUGUGGUAGAAAGCAGGUUUGCUGAUUUUUUAUAGACUGACCCCAAUAUCUUUUCGCUGUCGAUCAUGCUAAAAGUAAGAAUGAUUUGUGCCUGAUAGCAAAAGUUUAUGAAAGCAGAGGGUGUAACUUGUUUUUGUCAAAGAAAAGGAGAAUUCCAGAAGGAAAUUAACUCUCAGAAAUUAUAUUGAAAAGUUUGUCCUGCCAAAGAAAAAAACAAUUGUUUUCUUUGGCAGGACAGCAUAUUUUACCUAUCUUUGCAUUGAAAACAAAAGUUGUUUGAAACGUUAGUAAAUCAGUGGAAUUCAUUUGAAUACUGAUUAAAUCAUAACCCUUUUAAUUGUAUAAGUGCUUAUAAUCAAGGAGUUAUAAAGAGUUGGUUCUUUUUUAAAAGUCAUUGAA .((((.......(((((((.......((((..(((((.(((((...(((.(((((((..(((((((((((((...........))))))....)))))))...((((.((.(...(((((......(((((((.((....))))))))).....))))).).)).))))..((((((((..............................(((.........(((((..((......))..)))))........)))..((((((....)))))).)))))))).)))))))))).))))).)))))..))))....(((((.((((((((((((.((.......)).)))))).......))))))))))).........)))))))...(((((((((((((.((((((....((((.((((....))))......))))...........(((((.((((((((((((((((((((.........)))))))))))))))))).)).)))))....))))))...))))))))..)))))...))))..........(((((((.............((..(((.....(((((((((...((((((........)))))).)))).)))))....)))..)).............))))))). (-174.71) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 421 660 614 124 82 tfor:TF2282|5end_hypothetical_protein_2439401..2439631_POSITIVE 416 540 491 200 141 tfor:TF0538|5end_hypothetical_protein_566891..567121_POSITIVE 416 540 491 193 134 tfor:TF0539|5end_hypothetical_protein_566884..567114_POSITIVE 396 543 505 62 18 tfor:TF0424|5end_outer_membrane_receptor,_TonB-linked_440028..440258_POSITIVE 382 576 533 65 13 tfor:TF0411|5end_methyltransferase_428917..429147_POSITIVE 375 558 516 64 19 tfor:TF2097|5end_glucose_inhibited_division_protein_A_2269137..2269367_POSITIVE 369 540 491 228 169 tfor:TF2936|5end_conserved_hypothetical_protein;_possible_ribosomal_subunit_interface_protein_3138522..3138752_POSITIVE 368 540 492 186 126 tfor:TF1185|5end_hypothetical_protein_1269238..1269468_POSITIVE 363 540 504 178 136 tfor:TF1948|5end_conserved_hypothetical_protein_2095942..2096172_POSITIVE 362 539 503 167 122 tfor:TF0719|5end_hypothetical_protein_769798..770028_POSITIVE 360 539 491 206 143 tfor:TF2455|5end_conserved_hypothetical_protein;_possible_membrane_protein_2631959..2632189_POSITIVE 356 537 492 71 24 tfor:TF2980|5end_possible_alpha-amylase_3193179..3193409_POSITIVE 355 542 503 133 82 tfor:TF2047|5end_hypothetical_protein_2210057..2210287_POSITIVE 355 541 509 125 86 tfor:TF0215|5end_tRNA/rRNA_methyltransferase,_TrmH_family_241463..241693_POSITIVE 353 549 502 189 137 tfor:TF1170|5end_conserved_hypothetical_protein_1251862..1252092_POSITIVE 353 549 502 177 125 tfor:TF1171|5end_ABC_transporter,_ATP-binding_protein_1251850..1252080_POSITIVE 346 549 503 59 5 tfor:TF0090|5end_conserved_hypothetical_protein_96285..96515_POSITIVE 344 550 508 81 18 tfor:TF2833|5end_lipid_A_disaccharide_synthase_3023973..3024203_POSITIVE 343 550 501 164 99 tfor:TF2652|5end_hypothetical_protein_2821803..2822033_POSITIVE 343 550 501 116 51 tfor:TF2651|5end_hypothetical_protein_2821755..2821985_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 421 660 614 117 75 tfor:TF2280|3end_hypothetical_protein_2439474..2439624_POSITIVE 416 540 491 65 6 tfor:TF0537|3end_conserved_hypothetical_protein_566836..566986_POSITIVE 368 540 492 135 75 tfor:TF2745|3end_hypothetical_protein_2927947..2928097_POSITIVE 355 542 503 148 97 tfor:TF2046|3end_polyribonucleotide_nucleotidyltransferase_2210152..2210302_POSITIVE 347 538 492 150 93 tfor:TF1659|3end_hypothetical_protein_1775209..1775359_POSITIVE 343 550 501 87 22 tfor:TF2650|3end_succinate_dehydrogenase,_iron-sulfur_subunit_2821806..2821956_POSITIVE 339 540 492 96 36 tfor:TF1186|3end_hypothetical_protein_1269815..1269965_POSITIVE 336 549 512 42 3 tfor:TF0214|3end_DNA_recombination_and_repair_protein,_RecN_241571..241721_POSITIVE 334 539 492 74 15 tfor:TF0252|3end_hypothetical_protein_283759..283909_POSITIVE 326 555 515 76 30 tfor:TF1296|3end_possible_DNA-binding_protein,_histone-like_family_1378982..1379132_POSITIVE 319 540 499 111 76 tfor:TF3105|3end_hypothetical_protein_3338342..3338492_POSITIVE 318 538 492 150 93 tfor:TF1187|3end_hypothetical_protein_1269872..1270022_POSITIVE 318 538 492 150 93 tfor:TF0598|3end_hypothetical_protein_629500..629650_POSITIVE 316 542 503 75 27 tfor:TF0788|3end_protein-export_membrane_protein_841370..841520_POSITIVE 313 547 508 80 31 tfor:TF1173|3end_ABC_transporter,_permease_component_1256651..1256801_POSITIVE 309 539 506 33 1 tfor:TF0183|3end_conserved_hypothetical_protein_196567..196717_POSITIVE 307 560 519 72 33 tfor:TF1966|3end_conserved_hypothetical_protein_2115476..2115626_POSITIVE 304 539 512 130 95 tfor:TF2255|3end_transfer_region-related_protein,_TraH_2427961..2428111_POSITIVE 304 557 512 67 21 tfor:TF2226|3end_CTn_excision_protein_2395956..2396106_POSITIVE 304 541 509 44 3 tfor:TF0825|3end_hypothetical_protein_883850..884000_POSITIVE