Origin IGS: gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctgaacgctgactacttttcacttttcgtttttcacttttca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgaaaagtgaaaaacgaaaagtgaaaagtagtcagcgttcagcagaatgacaaattacgaattacgaacgcctcctctttgtcattccgaatgcttcctctttgtcattccgaacgcagtgaggaatctcgtgaggaaaaggaaaaagattcttcgcttacgctctgaatgacaagggaagtgaaaagtgagaaacgaatagtgaaaagtgaagagaattgttgaggtattgagttgttgtggggggcggttgggcgcattcccatttcggtacgccgcgtaggggcgaacctctgtgttcgcccgtcatgacgttgatatgaacatccccccagcccccccttcaaaggggggaagagcgcagtgaaggaggatgtagagctgacggctgaatgctgaatgctgtaagagccctgaaagggc Mask Tandem Repeat Region ================================================ gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattcgtaatttgtcattctgctgaacgctgactacttttcacttttcgtttttcacttttca Find is-nt database================================================ Query_seq: TF1590:TF1591|TF1590:TF1591:hypothetical protein:surface antigen BspA:->->:1706104..1706526 423 gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctgaacgctgactacttttcacttttcgtttttcacttttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1590:TF1591|TF1590:TF1591:hypothetical protein:surface antigen BspA:->->:1706104..1706526 423 gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctgaacgctgactacttttcacttttcgtttttcacttttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1590:TF1591|TF1590:TF1591:hypothetical protein:surface antigen BspA:->->:1706104..1706526 423 gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctgaacgctgactacttttcacttttcgtttttcacttttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctgaacgctgactacttttcacttttcgtttttcacttttca Predict ORF larger than 30AA ================================================ Protein_Len: 53 Strand: + Start: 105 End: 263 ........................................................................................................ M N V M T G E H R G S P L R G V P K W E C A Q P P P T T T Q Y L N N S L H F S L F V S H F S L P L S F R A ................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 23 End: 316 ...................... M Q H S A V S S T S S F T A L F P P L K G G L G G C S Y Q R H D G R T Q R F A P T R R T E M G M R P T A P H N N S I P Q ........................................................................................................... Protein_Len: 45 Strand: + Start: 205 End: 339 ............................................................................................................................................................................................................ M L F T F H Y S F L T F H F P C H S E R K R R I F F L F L T R F L T A F G M T K R K H S E .................................................................................... Protein_Len: 35 Strand: - Start: 259 End: 363 .................................................................................................................................................................................................................................................................. L T L S S D K E K E E R S E E S R E S H C L P L M R F S L S S A N T M ............................................................ Protein_Len: 41 Strand: - Start: 255 End: 377 .............................................................................................................................................................................................................................................................. E S R L R L I K K R K R V L N R V A N P I V F L F C E S H C L P P T R L E Y N T M .............................................. gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctgaacgctgactacttttcacttttcgtttttcacttttca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctgaacgctgactacttttcacttttcgtttttcacttttca Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 48 HP_score: -3.9 Tail_Score: -3.26471 Start: 110 End: 150 Full_Region: attcccatttcggta cgccgcgtaggggcgaac ctctgt gttcgcccgtcatgacg ttgatatgaacatcc .............................................................................................................cgccgcgtaggggcgaacctctgtgttcgcccgtcatgacg................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: TF1590:TF1591|TF1590:TF1591:hypothetical protein:surface antigen BspA:->->:1706104..1706526 423 gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctgaacgctgactacttttcacttttcgtttttcacttttca Intra-Species Hit: Count: 6 Min: 1 Max: 423 Len: 423 Subject: tfor_TF1590_TF1591|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[1706104,1706526]|423 HSP 1 e-value: 0.0 bit: 648.0 Len: 327 Query Start:97 Query End:423 Subject Strand: POSITIVE Subject Start: 97 Subject End: 423 ................................................................................................atgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctgaacgctgactacttttcacttttcgtttttcacttttca ................................................................................................atgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctgaacgctgactacttttcacttttcgtttttcacttttca HSP 2 e-value: 2.0E-38 bit: 161.0 Len: 81 Query Start:1 Query End:81 Subject Strand: POSITIVE Subject Start: 1 Subject End: 81 gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaa...................................................................................................................................................................................................................................................................................................................................................... gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaa...................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1592_TF1593|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1708618,1708998]|381 HSP 1 e-value: 1.0E-120 bit: 434.0 Len: 239 Query Start:97 Query End:335 Subject Strand: POSITIVE Subject Start: 71 Subject End: 308 ................................................................................................atgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattc........................................................................................ ................................................................................................atgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccctgtcattcagagcg-aagcgaagaatctttttccttctcctcacgagattcctcactgcgttcggaatgacaaagaggaggcattc........................................................................................ HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:333 Query End:367 Subject Strand: POSITIVE Subject Start: 283 Subject End: 317 ............................................................................................................................................................................................................................................................................................................................................ttcggaatgacaaagaggaggcgttcgtaattcgt........................................................ ............................................................................................................................................................................................................................................................................................................................................ttcggaatgacaaagaggaggcattcataattcgt........................................................ Subject: tfor_TF1588_TF1589|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[1702621,1703328]|708 HSP 1 e-value: 1.0E-100 bit: 365.0 Len: 228 Query Start:97 Query End:324 Subject Strand: POSITIVE Subject Start: 47 Subject End: 272 ................................................................................................atgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag................................................................................................... ................................................................................................atgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcg-aagcgatgaatc-ttttccttttcggggcgggattcctcactgcgttcggaatgacaaag................................................................................................... HSP 2 e-value: 4.0E-49 bit: 196.0 Len: 115 Query Start:308 Query End:422 Subject Strand: POSITIVE Subject Start: 565 Subject End: 679 ...................................................................................................................................................................................................................................................................................................................cgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctgaacgctgactacttttcacttttcgtttttcacttttc. ...................................................................................................................................................................................................................................................................................................................cgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctaaacgctgactacttttcacttttcactcttcacttttc. HSP 3 e-value: 3.0E-44 bit: 180.0 Len: 103 Query Start:249 Query End:351 Subject Strand: POSITIVE Subject Start: 483 Subject End: 585 ........................................................................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagagga........................................................................ ........................................................................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagagga........................................................................ HSP 4 e-value: 6.0E-36 bit: 153.0 Len: 81 Query Start:1 Query End:81 Subject Strand: POSITIVE Subject Start: 366 Subject End: 446 gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaa...................................................................................................................................................................................................................................................................................................................................................... gccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaa...................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1578_TF1579|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1686477,1687028]|552 HSP 1 e-value: 3.0E-28 bit: 127.0 Len: 111 Query Start:249 Query End:359 Subject Strand: POSITIVE Subject Start: 47 Subject End: 156 ........................................................................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatct-ttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcg................................................................ ........................................................................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctcttttcctttaccccgcgagattcctcactgcgttcggaatgac-aagaggaagtgttcggaatgac-aagaggaggtgttcg................................................................ HSP 2 e-value: 5.0E-21 bit: 103.0 Len: 99 Query Start:250 Query End:348 Subject Strand: POSITIVE Subject Start: 448 Subject End: 546 .........................................................................................................................................................................................................................................................tgtcattcagagcgtaagcgaagaatctttttcctttt-cctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaaga........................................................................... .........................................................................................................................................................................................................................................................tgtcattcagagcgtgagcgatgaatctcttttcttttaccccgcgagattcctcactgcgttcggaatgac-aagaggaagtgttcggaatgacaaaga........................................................................... HSP 3 e-value: 4.0E-6 bit: 54.0 Len: 31 Query Start:119 Query End:149 Subject Strand: POSITIVE Subject Start: 239 Subject End: 269 ......................................................................................................................gggcgaacacagaggttcgcccctacgcggc.................................................................................................................................................................................................................................................................................. ......................................................................................................................gggcgaacacagaggttcgcccctacacggc.................................................................................................................................................................................................................................................................................. Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 7.0E-14 bit: 79.8 Len: 100 Query Start:249 Query End:348 Subject Strand: POSITIVE Subject Start: 555 Subject End: 652 ........................................................................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaaga........................................................................... ........................................................................................................................................................................................................................................................ttgtcattcagagcg-aagcgatgaatctcttccctttaccccgcgagattcctcacggtgttcggaatgac-aagaggaggtgttcggaatgacaaaga........................................................................... Subject: tfor_TF1170_TF1172|conserved hypothetical protein:ABC transporter, permease component|POSITIVE:POSITIVE|[1252860,1252945]|86 HSP 1 e-value: 3.0E-7 bit: 58.0 Len: 29 Query Start:395 Query End:423 Subject Strand: POSITIVE Subject Start: 54 Subject End: 82 ..........................................................................................................................................................................................................................................................................................................................................................................................................acttttcacttttcgtttttcacttttca ..........................................................................................................................................................................................................................................................................................................................................................................................................acttttcacttttcgtttttcacttttca HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:208 Query End:242 Subject Strand: POSITIVE Subject Start: 48 Subject End: 82 ...............................................................................................................................................................................................................ctcttcacttttcactattcgtttctcacttttca..................................................................................................................................................................................... ...............................................................................................................................................................................................................ctcttcacttttcacttttcgtttttcacttttca..................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCCCUUUCAGGGCUCUUACAGCAUUCAGCAUUCAGCCGUCAGCUCUACAUCCUCCUUCACUGCGCUCUUCCCCCCUUUGAAGGGGGGGCUGGGGGGAUGUUCAUAUCAACGUCAUGACGGGCGAACACAGAGGUUCGCCCCUACGCGGCGUACCGAAAUGGGAAUGCGCCCAACCGCCCCCCACAACAACUCAAUACCUCAACAAUUCUCUUCACUUUUCACUAUUCGUUUCUCACUUUUCACUUCCCUUGUCAUUCAGAGCGUAAGCGAAGAAUCUUUUUCCUUUUCCUCACGAGAUUCCUCACUGCGUUCGGAAUGACAAAGAGGAAGCAUUCGGAAUGACAAAGAGGAGGCGUUCGUAAUUCGUAAUUUGUCAUUCUGCUGAACGCUGACUACUUUUCACUUUUCGUUUUUCACUUUUCA ((((.....)))).....((((.(((((((....(((((.......((((((((((.....((......(((((((....))))))))).))))))))))..................((((((((......))))))))....)))))...(((((.((((...(((......)))..))))...........................................................(((((((((((((((.(((((((.(.((.(((((((...............))))))).)).)))))))).))))))).))).)))))..))))).((((((((..(((.((....))..)))....))))))))..))))))).))))................................ (-134.56) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAAAAGUGAAAAACGAAAAGUGAAAAGUAGUCAGCGUUCAGCAGAAUGACAAAUUACGAAUUACGAACGCCUCCUCUUUGUCAUUCCGAAUGCUUCCUCUUUGUCAUUCCGAACGCAGUGAGGAAUCUCGUGAGGAAAAGGAAAAAGAUUCUUCGCUUACGCUCUGAAUGACAAGGGAAGUGAAAAGUGAGAAACGAAUAGUGAAAAGUGAAGAGAAUUGUUGAGGUAUUGAGUUGUUGUGGGGGGCGGUUGGGCGCAUUCCCAUUUCGGUACGCCGCGUAGGGGCGAACCUCUGUGUUCGCCCGUCAUGACGUUGAUAUGAACAUCCCCCCAGCCCCCCCUUCAAAGGGGGGAAGAGCGCAGUGAAGGAGGAUGUAGAGCUGACGGCUGAAUGCUGAAUGCUGUAAGAGCCCUGAAAGGGC ..........................((((.((((((((((((...(((((................((((...(((((..(..((((....(((((((..(((((((((.((.((.(((((((((((((....)...........))))))))))))..)).)).)))))))))))))))).....((.....)).....).)))..)..)))))..........((((((((.....((((((((((......))).)))))))))))))))...))))..((((((((......)))))))))))))..((((.......((((((((...(((((((((....))))))).........))...)).))))))......)))))))))))))))).))))......((((.....)))) (-146.12) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 917 100 55 47 1 tfor:TF2745|5end_hypothetical_protein_2927562..2927792_POSITIVE 905 100 51 151 99 tfor:TF3107|5end_hypothetical_protein_3338459..3338689_POSITIVE 884 310 261 180 131 tfor:TF1842|5end_hypothetical_protein_1992571..1992801_POSITIVE 857 100 51 212 163 tfor:TF0540|5end_conserved_hypothetical_protein;_possible_surface_protein_567286..567516_POSITIVE 802 102 63 49 2 tfor:TF3106|5end_hypothetical_protein_3338355..3338585_POSITIVE 758 102 62 47 1 tfor:TF0828|5end_hypothetical_protein_887090..887320_POSITIVE 746 320 271 179 130 tfor:TF0542|5end_hypothetical_protein_571918..572148_POSITIVE 720 100 51 200 150 tfor:TF1840|5end_transposase_1990221..1990451_POSITIVE 715 300 251 148 100 tfor:TF2777|5end_hypothetical_protein_2961595..2961825_POSITIVE 691 300 251 155 106 tfor:TF1841|5end_hypothetical_protein_1991936..1992166_POSITIVE 686 320 271 106 57 tfor:TF2816|5end_hypothetical_protein_3006925..3007155_POSITIVE 674 100 51 182 140 tfor:TF2818|5end_acetylornithine_aminotransferase_3007739..3007969_POSITIVE 663 102 63 49 5 tfor:TF2746|5end_hypothetical_protein_2927996..2928226_POSITIVE 644 120 73 230 183 tfor:TF0536|5end_conserved_hypothetical_protein_561917..562147_POSITIVE 637 155 118 81 45 tfor:TF1577|5end_hypothetical_protein_1685960..1686190_POSITIVE 633 300 251 215 166 tfor:TF2817|5end_hypothetical_protein_3007358..3007588_POSITIVE 620 323 281 48 5 tfor:TF1660|5end_hypothetical_protein_1775269..1775499_POSITIVE 610 84 47 231 193 tfor:TF2653|5end_hypothetical_protein_2822093..2822323_POSITIVE 604 339 293 213 156 tfor:TF1182|5end_hypothetical_protein_1268565..1268795_POSITIVE 599 340 293 60 16 tfor:TF1844|5end_hypothetical_protein_1996389..1996619_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 987 100 51 115 65 tfor:TF0370|3end_hypothetical_protein_386317..386467_POSITIVE 980 120 71 107 59 tfor:TF2651|3end_hypothetical_protein_2822014..2822164_POSITIVE 951 100 51 94 46 tfor:TF0821|3end_hypothetical_protein_880195..880345_POSITIVE 932 100 51 73 20 tfor:TF0828|3end_hypothetical_protein_887508..887658_POSITIVE 884 310 261 69 20 tfor:TF1841|3end_hypothetical_protein_1992267..1992417_POSITIVE 760 328 281 81 33 tfor:TF0369|3end_hypothetical_protein_386186..386336_POSITIVE 685 327 284 45 3 tfor:TF0541|3end_conserved_hypothetical_protein_571858..572008_POSITIVE 658 100 51 151 93 tfor:TF2816|3end_hypothetical_protein_3007184..3007334_POSITIVE 584 170 128 45 1 tfor:TF1165|3end_conserved_hypothetical_protein_1245921..1246071_POSITIVE 574 289 249 130 91 tfor:TF1483|3end_glycosyltransferase_family_protein_1578825..1578975_POSITIVE 560 293 251 40 2 tfor:TF0538|3end_hypothetical_protein_567135..567285_POSITIVE 548 43 1 97 57 tfor:TF1182|3end_hypothetical_protein_1268938..1269088_POSITIVE 523 283 249 86 53 tfor:TF2817|3end_hypothetical_protein_3007626..3007776_POSITIVE 523 80 31 149 97 tfor:TF0539|3end_hypothetical_protein_567323..567473_POSITIVE 509 43 1 135 95 tfor:TF1185|3end_hypothetical_protein_1269563..1269713_POSITIVE 507 287 249 54 11 tfor:TF1844|3end_hypothetical_protein_1996693..1996843_POSITIVE 486 144 119 64 39 tfor:TF1838|3end_tRNA/rRNA_methyltransferase_1988745..1988895_POSITIVE 478 84 55 143 114 tfor:TF1842|3end_hypothetical_protein_1992800..1992950_POSITIVE 472 247 208 96 56 tfor:TF1657|3end_lauroyl/myristoyl_acyltransferase_1773407..1773557_POSITIVE 469 99 51 73 17 tfor:TF1519|3end_hypothetical_protein_1628022..1628172_POSITIVE