Origin IGS: tcaaccgtcagctccgcattccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgaagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaagggacatccaaatcaatcattcattcaggcttccagccctccgctgagggattgccctatttccccaacgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaaggggggagggggggatgttcctctgcgttcggtcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctaaacgctgactacttttcacttttcactcttcacttttcgtttttcacttttcacttttcacttttca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgaaaagtgaaaagtgaaaagtgaaaaacgaaaagtgaagagtgaaaagtgaaaagtagtcagcgtttagcagaatgacaaattacgaattacgaacgcctcctctttgtcattccgaatgcttcctctttgtcattccgaacgtctcctctttgtcattccgaacgcagtgaggaatctcgtgaggaaaaggaaaaagattcttcgcttacgctctgaatgacaaaagaccgaacgcagaggaacatccccccctccccccttcaaaggggggaagagcgcagtgaaggaggatgtagagctgacggctgaatgctgactgctgtaagagccctgaaagggcgtgttaattcagcccaatgcgcagcgttggggaaatagggcaatccctcagcggagggctggaagcctgaatgaatgattgatttggatgtccctttgtcattccgaacgcagtgaggaatcccgccccgaaaaggaaaagattcatcgcttcgctctgaatgacaagggaagtgaaaagtgagaaacgaatagtgaaaagtgaagagaattgttgaggtcttgagttgttgtggggggcggttgggcgcattcccatttcggtacgccgcgtaggggcgaacctctgtgttcgcccgtcatgacgttgatatgaacatccccccagcccccccttcaaagggggaatgcggagctgacggttga Mask Tandem Repeat Region ================================================ tcaaccgtcagctccgcattccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgaagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaagggacatccaaatcaatcattcattcaggcttccagccctccgctgagggattgccctatttccccaacgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaaggggggagggggggatgttcctctgcgttcggtcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattcgtaatttgtcattctgctaaacgctgactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Find is-nt database================================================ Query_seq: TF1588:TF1589|TF1588:TF1589:hypothetical protein:surface antigen BspA:->->:1702621..1703328 708 tcaaccgtcagctccgcattccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgaagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaagggacatccaaatcaatcattcattcaggcttccagccctccgctgagggattgccctatttccccaacgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaaggggggagggggggatgttcctctgcgttcggtcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctaaacgctgactacttttcacttttcactcttcacttttcgtttttcacttttcacttttcacttttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1588:TF1589|TF1588:TF1589:hypothetical protein:surface antigen BspA:->->:1702621..1703328 708 tcaaccgtcagctccgcattccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgaagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaagggacatccaaatcaatcattcattcaggcttccagccctccgctgagggattgccctatttccccaacgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaaggggggagggggggatgttcctctgcgttcggtcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctaaacgctgactacttttcacttttcactcttcacttttcgtttttcacttttcacttttcacttttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1588:TF1589|TF1588:TF1589:hypothetical protein:surface antigen BspA:->->:1702621..1703328 708 tcaaccgtcagctccgcattccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgaagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaagggacatccaaatcaatcattcattcaggcttccagccctccgctgagggattgccctatttccccaacgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaaggggggagggggggatgttcctctgcgttcggtcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctaaacgctgactacttttcacttttcactcttcacttttcgtttttcacttttcacttttcacttttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tcaaccgtcagctccgcattccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgaagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaagggacatccaaatcaatcattcattcaggcttccagccctccgctgagggattgccctatttccccaacgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaaggggggagggggggatgttcctctgcgttcggtcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctaaacgctgactacttttcacttttcactcttcacttttcgtttttcacttttcacttttcacttttca Predict ORF larger than 30AA ================================================ Protein_Len: 55 Strand: + Start: 55 End: 219 ...................................................... M N V M T G E H R G S P L R G V P K W E C A Q P P P T T T Q D L N N S L H F S L F V S H F S L P L S F R A K R ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 18 End: 359 ................. M P P L K G G L G G C S Y Q R H D G R T Q R F A P T R R T E M G M R P T A P H N N S R P Q Q F S S L F T I R F S L F T S ............................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 155 End: 442 .......................................................................................................................................................... M L F T F H Y S F L T F H F P C H S E R S D E S F P F R G G I P H C V R N D K G T S K S I I H S G F Q P S A E G L P Y F .......................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 461 End: 550 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M F L C V R S F V I Q S V S E E S F S F S S R D S S L R S E .............................................................................................................................................................. Protein_Len: 60 Strand: + Start: 358 End: 573 ..................................................................................................................................................................................................................................................................................................................................................................... M N T P F Q G S Y S S Q H S A V S S T S S F T A L F P P L K G G G G D V P L R S V F C H S E R K R R I F F L F L T R F L ....................................................................................................................................... Protein_Len: 32 Strand: - Start: 539 End: 634 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q T R F S L S S V N P I V F L F C E S H C L P P T R L E Y N T M .......................................................................... Protein_Len: 45 Strand: - Start: 493 End: 627 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L T L S S D K E K E E R S E E S R E S H C L P S T R F S L S S A N P I V F L L R E Y N T M ................................................................................. Protein_Len: 44 Strand: - Start: 489 End: 620 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S R L R L I K K R K R V L N R V A N P I V F L L R E S H C L P L M R F S L S S A N T M ........................................................................................ Protein_Len: 30 Strand: - Start: 400 End: 489 ............................................................................................................................................................................................................................................................................................................................................................................................................... G D A R C G G E S R E E G R Q L P S P P I N R Q T R D K T M ........................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 186 End: 287 ......................................................................................................................................................................................... K E S G K D N L A F R H I K E K E P R S E E S R E S H C L S M W I M ..................................................................................................................................................................................................................................................................................................................................................................................................................................... tcaaccgtcagctccgcattccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgaagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaagggacatccaaatcaatcattcattcaggcttccagccctccgctgagggattgccctatttccccaacgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaaggggggagggggggatgttcctctgcgttcggtcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctaaacgctgactacttttcacttttcactcttcacttttcgtttttcacttttcacttttcacttttca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tcaaccgtcagctccgcattccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgaagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaagggacatccaaatcaatcattcattcaggcttccagccctccgctgagggattgccctatttccccaacgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaaggggggagggggggatgttcctctgcgttcggtcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctaaacgctgactacttttcacttttcactcttcacttttcgtttttcacttttcacttttcacttttca Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 48 HP_score: -3.9 Tail_Score: -3.26471 Start: 60 End: 100 Full_Region: attcccatttcggta cgccgcgtaggggcgaac ctctgt gttcgcccgtcatgacg ttgatatgaacatcc ...........................................................cgccgcgtaggggcgaacctctgtgttcgcccgtcatgacg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 79 HP_score: -11.8 Tail_Score: -3.21288 Start: 426 End: 461 Full_Region: TACATCCTCCTTCAC TGCGCTCTTCCCCCCT TTGA AGGGGGGAGGGGGGGA TGTTCCTCTGCGTTC .........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCTTCCCCCCTTTGAAGGGGGGAGGGGGGGA....................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TF1588:TF1589|TF1588:TF1589:hypothetical protein:surface antigen BspA:->->:1702621..1703328 708 tcaaccgtcagctccgcattccccctttgaagggggggctggggggatgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgaagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaagggacatccaaatcaatcattcattcaggcttccagccctccgctgagggattgccctatttccccaacgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaaggggggagggggggatgttcctctgcgttcggtcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctaaacgctgactacttttcacttttcactcttcacttttcgtttttcacttttcacttttcacttttca Intra-Species Hit: Count: 23 Min: 1 Max: 651 Len: 651 Subject: tfor_TF1588_TF1589|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[1702621,1703328]|708 HSP 1 e-value: 0.0 bit: 793.0 Len: 400 Query Start:47 Query End:446 Subject Strand: POSITIVE Subject Start: 47 Subject End: 446 ..............................................atgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgaagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaagggacatccaaatcaatcattcattcaggcttccagccctccgctgagggattgccctatttccccaacgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaa...................................................................................................................................................................................................................................................................... ..............................................atgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgaagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaagggacatccaaatcaatcattcattcaggcttccagccctccgctgagggattgccctatttccccaacgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaa...................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-104 bit: 379.0 Len: 191 Query Start:461 Query End:651 Subject Strand: POSITIVE Subject Start: 461 Subject End: 651 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................atgttcctctgcgttcggtcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctaaacgctgact......................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................atgttcctctgcgttcggtcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctaaacgctgact......................................................... HSP 3 e-value: 3.0E-11 bit: 71.9 Len: 76 Query Start:483 Query End:558 Subject Strand: POSITIVE Subject Start: 199 Subject End: 272 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttgtcattcagagcg-aagcgatgaatctttt-ccttttcggggcgggattcctcactgcgttcggaatgacaaag...................................................................................................................................................... HSP 4 e-value: 3.0E-11 bit: 71.9 Len: 74 Query Start:199 Query End:272 Subject Strand: POSITIVE Subject Start: 483 Subject End: 558 ......................................................................................................................................................................................................ttgtcattcagagcg-aagcgatgaatctttt-ccttttcggggcgggattcctcactgcgttcggaatgacaaag.................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag.................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 5 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:1 Query End:31 Subject Strand: POSITIVE Subject Start: 1 Subject End: 31 tcaaccgtcagctccgcattccccctttgaa..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tcaaccgtcagctccgcattccccctttgaa..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1590_TF1591|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[1706104,1706526]|423 HSP 1 e-value: 1.0E-99 bit: 365.0 Len: 226 Query Start:47 Query End:272 Subject Strand: POSITIVE Subject Start: 97 Subject End: 324 ..............................................atgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcg-aagcgatgaatc-ttttccttttcggggcgggattcctcactgcgttcggaatgacaaag.................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................atgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag.................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-44 bit: 180.0 Len: 103 Query Start:483 Query End:585 Subject Strand: POSITIVE Subject Start: 249 Subject End: 351 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagagga........................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggaagcattcggaatgacaaagagga........................................................................................................................... HSP 3 e-value: 3.0E-39 bit: 165.0 Len: 87 Query Start:565 Query End:651 Subject Strand: POSITIVE Subject Start: 308 Subject End: 394 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctaaacgctgact......................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgttcggaatgacaaagaggaagcattcggaatgacaaagaggaggcgttcgtaattcgtaatttgtcattctgctgaacgctgact......................................................... HSP 4 e-value: 1.0E-35 bit: 153.0 Len: 81 Query Start:366 Query End:446 Subject Strand: POSITIVE Subject Start: 1 Subject End: 81 .............................................................................................................................................................................................................................................................................................................................................................................gccctttcagggctcttacagcagtcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaa...................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................gccctttcagggctcttacagcattcagcattcagccgtcagctctacatcctccttcactgcgctcttcccccctttgaa...................................................................................................................................................................................................................................................................... Subject: tfor_TF1592_TF1593|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1708618,1708998]|381 HSP 1 e-value: 6.0E-99 bit: 363.0 Len: 226 Query Start:47 Query End:272 Subject Strand: POSITIVE Subject Start: 71 Subject End: 297 ..............................................atgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaagacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccttgtcattcagagcgaagcgatgaatctttt-ccttttcggggcgggattcctcactgcgttcggaatgacaaag.................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................atgttcatatcaacgtcatgacgggcgaacacagaggttcgcccctacgcggcgtaccgaaatgggaatgcgcccaaccgccccccacaacaactcaatacctcaacaattctcttcacttttcactattcgtttctcacttttcacttcccctgtcattcagagcgaagcgaagaatctttttccttctcctcacgagattcctcactgcgttcggaatgacaaag.................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-30 bit: 135.0 Len: 80 Query Start:484 Query End:563 Subject Strand: POSITIVE Subject Start: 224 Subject End: 302 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggag................................................................................................................................................. ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgtcattcagagcg-aagcgaagaatctttttccttctcctcacgagattcctcactgcgttcggaatgacaaagaggag................................................................................................................................................. HSP 3 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:366 Query End:393 Subject Strand: POSITIVE Subject Start: 1 Subject End: 28 .............................................................................................................................................................................................................................................................................................................................................................................gccctttcagggctcttacagcagtcag........................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................gccctttcagggctcttacagcagtcag........................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 7.0E-6 bit: 54.0 Len: 35 Query Start:590 Query End:624 Subject Strand: POSITIVE Subject Start: 283 Subject End: 317 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttcggaatgacaaagaggaggcgttcgtaattcgt.................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttcggaatgacaaagaggaggcattcataattcgt.................................................................................... Subject: tfor_TF1841_TF1842|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1992328,1992710]|383 HSP 1 e-value: 9.0E-30 bit: 133.0 Len: 79 Query Start:480 Query End:558 Subject Strand: NEGATIVE Subject Start: 281 Subject End: 359 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttttgtcattcagagcgtaagcgaagaatctctttcctcttcctcgcgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... HSP 2 e-value: 9.0E-27 bit: 123.0 Len: 74 Query Start:482 Query End:555 Subject Strand: NEGATIVE Subject Start: 11 Subject End: 84 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgaca......................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctctttcctcttcctcgcgagattcctcactgcgttcggaatgaca......................................................................................................................................................... HSP 3 e-value: 1.0E-19 bit: 99.6 Len: 123 Query Start:199 Query End:321 Subject Strand: NEGATIVE Subject Start: 232 Subject End: 356 ......................................................................................................................................................................................................ttgtcattcagagcg-aagcgatgaatct-tttccttttcggggcgggattcctcactgcgttcggaatgacaaa-gggacatccaaatcaatcattcattcaggcttccagccctccgctgaggg................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctctttcctcttcctcgcgagattcctcactgcgttcggaatgacaaagggggcatccaaatccat-atttattcaggctttcagccctccgccgaggg................................................................................................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 2.0E-9 bit: 65.9 Len: 71 Query Start:199 Query End:269 Subject Strand: NEGATIVE Subject Start: 11 Subject End: 83 ......................................................................................................................................................................................................ttgtcattcagagcg-aagcgatgaatct-tttccttttcggggcgggattcctcactgcgttcggaatgaca....................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctctttcctcttcctcgcgagattcctcactgcgttcggaatgaca....................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 5 e-value: 3.0E-8 bit: 61.9 Len: 39 Query Start:341 Query End:379 Subject Strand: NEGATIVE Subject Start: 163 Subject End: 201 ....................................................................................................................................................................................................................................................................................................................................................gctgcgcattgggctgaattaacacgccctttcagggct......................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................gctgcacattgggctgaattaatacgccctttcagggct......................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1578_TF1579|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1686477,1687028]|552 HSP 1 e-value: 1.0E-28 bit: 129.0 Len: 124 Query Start:482 Query End:605 Subject Strand: POSITIVE Subject Start: 46 Subject End: 168 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatct-ttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaagaggaagcattcggaatgacaaaga....................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctcttttcctttaccccgcgagattcctcactgcgttcggaatgac-aagaggaagtgttcggaatgac-aagaggaggtgttcggaatgacaaaga....................................................................................................... HSP 2 e-value: 2.0E-18 bit: 95.6 Len: 99 Query Start:484 Query End:582 Subject Strand: POSITIVE Subject Start: 448 Subject End: 546 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgtcattcagagcgtaagcgaagaatctttttcctttt-cctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaaga.............................................................................................................................. ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgtcattcagagcgtgagcgatgaatctcttttcttttaccccgcgagattcctcactgcgttcggaatgac-aagaggaagtgttcggaatgacaaaga.............................................................................................................................. HSP 3 e-value: 7.0E-9 bit: 63.9 Len: 72 Query Start:199 Query End:270 Subject Strand: POSITIVE Subject Start: 47 Subject End: 121 ......................................................................................................................................................................................................ttgtcattcagagcg-aagcgatgaatct--tttccttttcggggcgggattcctcactgcgttcggaatgacaa...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctcttttcctttaccccgcgagattcctcactgcgttcggaatgacaa...................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 7.0E-6 bit: 54.0 Len: 31 Query Start:69 Query End:99 Subject Strand: POSITIVE Subject Start: 239 Subject End: 269 ....................................................................gggcgaacacagaggttcgcccctacgcggc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ....................................................................gggcgaacacagaggttcgcccctacacggc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 5 e-value: 7.0E-6 bit: 54.0 Len: 27 Query Start:244 Query End:270 Subject Strand: POSITIVE Subject Start: 495 Subject End: 521 ...................................................................................................................................................................................................................................................gattcctcactgcgttcggaatgacaa...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................gattcctcactgcgttcggaatgacaa...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1483_TF1484|glycosyltransferase family protein:penicillin binding protein|POSITIVE:POSITIVE|[1578886,1579698]|813 HSP 1 e-value: 1.0E-28 bit: 129.0 Len: 129 Query Start:199 Query End:327 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 298 ......................................................................................................................................................................................................ttgtcattcagagcgaagcgatgaatcttttcctttt--cggggcgggattcctcactgcgttcggaatgacaaag-ggacatccaaatcaatcattcattcaggcttccagccctccgctgagggattgcc............................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................ttgtcattcagagcgaagcgaagaatctcttccctttaccggggcgggattcctcactacgttcggaatgacaaagacggcatctaaatccat-attcattcaggctttcagccctccgctgaggggttgcc............................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2921_TF2922|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[3118851,3119261]|411 HSP 1 e-value: 2.0E-27 bit: 125.0 Len: 99 Query Start:482 Query End:580 Subject Strand: POSITIVE Subject Start: 98 Subject End: 194 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaa................................................................................................................................ .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttcc-tttccccacgggattcctcactacgttcggaatgacaaag-ggtggcgttcggaatgacaaa................................................................................................................................ HSP 2 e-value: 5.0E-19 bit: 97.6 Len: 77 Query Start:482 Query End:558 Subject Strand: POSITIVE Subject Start: 270 Subject End: 346 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctcttccctcttccccgtgagattcctcactacgttcggaatgacaaag...................................................................................................................................................... HSP 3 e-value: 7.0E-12 bit: 73.8 Len: 76 Query Start:199 Query End:274 Subject Strand: POSITIVE Subject Start: 99 Subject End: 175 ......................................................................................................................................................................................................ttgtcattcagagcg-aagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctttttcctttccccacgggattcctcactacgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 4 e-value: 7.0E-6 bit: 54.0 Len: 31 Query Start:244 Query End:274 Subject Strand: POSITIVE Subject Start: 318 Subject End: 348 ...................................................................................................................................................................................................................................................gattcctcactgcgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. ...................................................................................................................................................................................................................................................gattcctcactacgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2922_TF2923|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[3121599,3122307]|709 HSP 1 e-value: 9.0E-24 bit: 113.0 Len: 77 Query Start:482 Query End:558 Subject Strand: POSITIVE Subject Start: 420 Subject End: 496 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctctttcctcttccccacgggattcctcactacgttcggaatgacaaag...................................................................................................................................................... HSP 2 e-value: 5.0E-10 bit: 67.9 Len: 76 Query Start:199 Query End:274 Subject Strand: POSITIVE Subject Start: 421 Subject End: 498 ......................................................................................................................................................................................................ttgtcattcagagcg-aagcgatgaatct-tttccttttcggggcgggattcctcactgcgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctctttcctcttccccacgggattcctcactacgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2920_TF2921|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3117231,3118637]|1407 HSP 1 e-value: 9.0E-24 bit: 113.0 Len: 77 Query Start:482 Query End:558 Subject Strand: POSITIVE Subject Start: 410 Subject End: 486 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctctttcctctttcccacgggattcctcactgcgttcggaatgacaaag...................................................................................................................................................... HSP 2 e-value: 9.0E-24 bit: 113.0 Len: 81 Query Start:478 Query End:558 Subject Strand: POSITIVE Subject Start: 725 Subject End: 805 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtcttttgtcattcagagcgtaagcgaagaatctcttccctttcccccgtgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... HSP 3 e-value: 5.0E-19 bit: 97.6 Len: 78 Query Start:244 Query End:321 Subject Strand: POSITIVE Subject Start: 777 Subject End: 855 ...................................................................................................................................................................................................................................................gattcctcactgcgttcggaatgacaaaggg--acatccaaatcaatcattcattcaggcttccagccctccgctgaggg................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................gattcctcactgcgttcggaatgacaaagggcagcatccaaatc-attattcattcaggctttcagccctccgctgaggg................................................................................................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 2.0E-18 bit: 95.6 Len: 81 Query Start:241 Query End:321 Subject Strand: POSITIVE Subject Start: 455 Subject End: 536 ................................................................................................................................................................................................................................................cgggattcctcactgcgttcggaatgacaaaggg--acatccaaatcaatcattcattcaggcttccagccctccgctgaggg................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................cgggattcctcactgcgttcggaatgacaaagggcagcatccaaatc-attattcattcaggctttcagccctccgccgaggg................................................................................................................................................................................................................................................................................................................................................................................................... HSP 5 e-value: 5.0E-16 bit: 87.7 Len: 56 Query Start:340 Query End:395 Subject Strand: POSITIVE Subject Start: 888 Subject End: 943 ...................................................................................................................................................................................................................................................................................................................................................cgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagca......................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................cgctgcgcattgggctgaattaatacgccctttcagggctcttacaacggtcagca......................................................................................................................................................................................................................................................................................................................... HSP 6 e-value: 3.0E-8 bit: 61.9 Len: 47 Query Start:340 Query End:386 Subject Strand: POSITIVE Subject Start: 565 Subject End: 611 ...................................................................................................................................................................................................................................................................................................................................................cgctgcgcattgggctgaattaacacgccctttcagggctcttacag.................................................................................................................................................................................................................................................................................................................................. ...................................................................................................................................................................................................................................................................................................................................................cgctgcacattggactgaattaacgcgccctttcagggctgttacag.................................................................................................................................................................................................................................................................................................................................. HSP 7 e-value: 4.0E-7 bit: 58.0 Len: 37 Query Start:461 Query End:497 Subject Strand: POSITIVE Subject Start: 167 Subject End: 203 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................atgttcctctgcgttcggtcttttgtcattcagagcg................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................atgttcctctgcggtcggtcatttgtcattcagagcg................................................................................................................................................................................................................... Subject: tfor_TF2823_TF2824|TPR-containing protein:nucleoside-transporting protein nupG|POSITIVE:POSITIVE|[3014398,3014840]|443 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 99 Query Start:482 Query End:580 Subject Strand: NEGATIVE Subject Start: 82 Subject End: 178 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaa................................................................................................................................ .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcg-aagcgaagaatctcttcccttttccccgcgagattcctcactgcgttcggaatgacaaag-ggtggcgttcgtaatgacaaa................................................................................................................................ HSP 2 e-value: 5.0E-19 bit: 97.6 Len: 72 Query Start:331 Query End:402 Subject Strand: NEGATIVE Subject Start: 322 Subject End: 394 ..........................................................................................................................................................................................................................................................................................................................................tttccccaacgctgcgcattgggctgaattaacac-gccctttcagggctcttacagcagtcagcattcagcc.................................................................................................................................................................................................................................................................................................................. ..........................................................................................................................................................................................................................................................................................................................................tttccccaacgcttcgcattgggctgaattaacacagccctttcagggctgttacagcggtcagcagtcagcc.................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 1.0E-16 bit: 89.7 Len: 76 Query Start:199 Query End:274 Subject Strand: NEGATIVE Subject Start: 101 Subject End: 177 ......................................................................................................................................................................................................ttgtcattcagagcgaagcgatgaatcttttcc-ttttcggggcgggattcctcactgcgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................ttgtcattcagagcgaagcgaagaatctcttcccttttccccgcgagattcctcactgcgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2640_TF2641|hypothetical protein:riboflavin kinase/FAD synthase|POSITIVE:POSITIVE|[2809594,2809820]|227 HSP 1 e-value: 1.0E-19 bit: 99.6 Len: 86 Query Start:234 Query End:319 Subject Strand: POSITIVE Subject Start: 34 Subject End: 118 .........................................................................................................................................................................................................................................ttcggggcgggattcctcactgcgttcggaatgacaaagggacatccaaatcaatcattcattcaggcttccagccctccgctgag..................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................ttcgaggcgagattcctcactacgttcggaatgacaaagggatatctaaatccat-attcattcaggctttcagccctccgctgag..................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-13 bit: 77.8 Len: 63 Query Start:331 Query End:393 Subject Strand: POSITIVE Subject Start: 131 Subject End: 193 ..........................................................................................................................................................................................................................................................................................................................................tttccccaacgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcag........................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................tttccccaacgcttcgcattggactgaattaatgcgccctttcagggcttttacagcggtcag........................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-6 bit: 56.0 Len: 32 Query Start:527 Query End:558 Subject Strand: POSITIVE Subject Start: 41 Subject End: 72 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgagattcctcactacgttcggaatgacaaag...................................................................................................................................................... Subject: tfor_TF2914_TF2915|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3109704,3110561]|858 HSP 1 e-value: 5.0E-19 bit: 97.6 Len: 76 Query Start:199 Query End:274 Subject Strand: POSITIVE Subject Start: 217 Subject End: 293 ......................................................................................................................................................................................................ttgtcattcagagcgaagcgatgaatctttt-ccttttcggggcgggattcctcactgcgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................ttgtcattcagagcgaagcgaagaatcttttcccttttcgaggcgagattcctcacggtgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-15 bit: 85.7 Len: 91 Query Start:482 Query End:572 Subject Strand: POSITIVE Subject Start: 216 Subject End: 304 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcgga........................................................................................................................................ .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcg-aagcgaagaatcttttcccttttcgaggcgagattcctcacggtgttcggaatgacaaag-ggtgacgttcgga........................................................................................................................................ HSP 3 e-value: 3.0E-11 bit: 71.9 Len: 56 Query Start:340 Query End:395 Subject Strand: POSITIVE Subject Start: 407 Subject End: 462 ...................................................................................................................................................................................................................................................................................................................................................cgctgcgcattgggctgaattaacacgccctttcagggctcttacagcagtcagca......................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................cgctgcacattgggctgaattaacgtgccctttcagggcttttacagcggtcagca......................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 1.0E-16 bit: 89.7 Len: 101 Query Start:482 Query End:582 Subject Strand: POSITIVE Subject Start: 554 Subject End: 652 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaagaggagacgttcggaatgacaaaga.............................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcg-aagcgatgaatctcttccctttaccccgcgagattcctcacggtgttcggaatgac-aagaggaggtgttcggaatgacaaaga.............................................................................................................................. HSP 2 e-value: 2.0E-9 bit: 65.9 Len: 72 Query Start:199 Query End:270 Subject Strand: POSITIVE Subject Start: 555 Subject End: 627 ......................................................................................................................................................................................................ttgtcattcagagcgaagcgatgaatct-tttccttttcggggcgggattcctcactgcgttcggaatgacaa...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................ttgtcattcagagcgaagcgatgaatctcttccctttaccccgcgagattcctcacggtgttcggaatgacaa...................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 4.0E-7 bit: 58.0 Len: 49 Query Start:347 Query End:395 Subject Strand: POSITIVE Subject Start: 832 Subject End: 880 ..........................................................................................................................................................................................................................................................................................................................................................cattgggctgaattaacacgccctttcagggctcttacagcagtcagca......................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................cattgggctgaattaatgcgccctttcagggctgttacaacggtcagca......................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0541_TF0542|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[571919,572057]|139 HSP 1 e-value: 1.0E-16 bit: 89.7 Len: 77 Query Start:482 Query End:558 Subject Strand: NEGATIVE Subject Start: 48 Subject End: 123 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagggcg-aagcgaagaatctccttctttttcctcgcgagattcctcactacgttcggaatgacaaag...................................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 65.9 Len: 76 Query Start:199 Query End:274 Subject Strand: NEGATIVE Subject Start: 46 Subject End: 122 ......................................................................................................................................................................................................ttgtcattcagagcgaagcgatgaatctt-ttccttttcggggcgggattcctcactgcgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................ttgtcattcagggcgaagcgaagaatctccttctttttcctcgcgagattcctcactacgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2816_TF2817|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3007245,3007497]|253 HSP 1 e-value: 2.0E-15 bit: 85.7 Len: 76 Query Start:199 Query End:274 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 181 ......................................................................................................................................................................................................ttgtcattcagagcgaagcgatgaatct--tttccttttcggggcgggattcctcactgcgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................ttgtcattcagagcaaagcgaagaatctcctttccttttcctcgcgggattcctcactgtgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 8.0E-15 bit: 83.8 Len: 77 Query Start:482 Query End:558 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 182 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctt-tttccttttcctcacgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagca-aagcgaagaatctcctttccttttcctcgcgggattcctcactgtgttcggaatgacaaag...................................................................................................................................................... Subject: tfor_TF2997_TF2998|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[3211725,3211950]|226 HSP 1 e-value: 3.0E-14 bit: 81.8 Len: 77 Query Start:482 Query End:558 Subject Strand: POSITIVE Subject Start: 25 Subject End: 99 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcg-aagcgaagaatctcattc-ttttccccacgggattcctcactacgttcggaatgacaaag...................................................................................................................................................... HSP 2 e-value: 5.0E-13 bit: 77.8 Len: 75 Query Start:199 Query End:273 Subject Strand: POSITIVE Subject Start: 26 Subject End: 100 ......................................................................................................................................................................................................ttgtcattcagagcgaagcgatgaatcttttccttttcggggcgggattcctcactgcgttcggaatgacaaagg................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................ttgtcattcagagcgaagcgaagaatctcattcttttccccacgggattcctcactacgttcggaatgacaaagg................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1838_TF1839|tRNA/rRNA methyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1988806,1989486]|681 HSP 1 e-value: 3.0E-14 bit: 81.8 Len: 77 Query Start:482 Query End:558 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 181 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctctttcttttactccgcgggattcctcacggtgttcggaatgacaaag...................................................................................................................................................... HSP 2 e-value: 4.0E-7 bit: 58.0 Len: 75 Query Start:199 Query End:273 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 180 ......................................................................................................................................................................................................ttgtcattcagagcg-aagcgatgaatcttttcctttt-cggggcgggattcctcactgcgttcggaatgacaaagg................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................ttgtcattcagagcgtaagcgaagaatctctttcttttactccgcgggattcctcacggtgttcggaatgacaaagg................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1848_TF1850|conserved hypothetical protein:Na+/H+-exchanging protein|POSITIVE:POSITIVE|[1998005,1998681]|677 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 76 Query Start:482 Query End:557 Subject Strand: NEGATIVE Subject Start: 455 Subject End: 530 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaa....................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtcagcgaagaatctcttccctttcccctgcgagattcctcacggtgttcggaatgacaaa....................................................................................................................................................... HSP 2 e-value: 7.0E-9 bit: 63.9 Len: 36 Query Start:347 Query End:382 Subject Strand: NEGATIVE Subject Start: 75 Subject End: 110 ..........................................................................................................................................................................................................................................................................................................................................................cattgggctgaattaacacgccctttcagggctctt...................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................cattgggctgaattaacgcgccctttcagggctctt...................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1591_TF1592|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[1708327,1708464]|138 HSP 1 e-value: 1.0E-10 bit: 69.9 Len: 79 Query Start:479 Query End:557 Subject Strand: POSITIVE Subject Start: 53 Subject End: 130 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaa....................................................................................................................................................... ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcttttgtcattcagagca-aagcgatgaatctttttccttctccaagtgagattcctcacggtgttcggaatgacaaa....................................................................................................................................................... HSP 2 e-value: 1.0E-7 bit: 60.0 Len: 73 Query Start:199 Query End:271 Subject Strand: POSITIVE Subject Start: 57 Subject End: 130 ......................................................................................................................................................................................................ttgtcattcagagcgaagcgatgaatctttt-ccttttcggggcgggattcctcactgcgttcggaatgacaaa..................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................ttgtcattcagagcaaagcgatgaatctttttccttctccaagtgagattcctcacggtgttcggaatgacaaa..................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1589_TF1590|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[1705807,1705950]|144 HSP 1 e-value: 1.0E-10 bit: 69.9 Len: 79 Query Start:479 Query End:557 Subject Strand: POSITIVE Subject Start: 59 Subject End: 136 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcttttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaa....................................................................................................................................................... ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcttttgtcattcagagcg-aagtgatgaatctttttccttctccaagtgagattcctcacggtgttcggaatgacaaa....................................................................................................................................................... HSP 2 e-value: 1.0E-7 bit: 60.0 Len: 73 Query Start:199 Query End:271 Subject Strand: POSITIVE Subject Start: 63 Subject End: 136 ......................................................................................................................................................................................................ttgtcattcagagcgaagcgatgaatctttt-ccttttcggggcgggattcctcactgcgttcggaatgacaaa..................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................ttgtcattcagagcgaagtgatgaatctttttccttctccaagtgagattcctcacggtgttcggaatgacaaa..................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0603_TF0604|glycosyltransferase:hypothetical protein|POSITIVE:POSITIVE|[634899,635524]|626 HSP 1 e-value: 2.0E-9 bit: 65.9 Len: 76 Query Start:199 Query End:274 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 217 ......................................................................................................................................................................................................ttgtcattcagagcgaagcgatgaatct-tttccttttcggggcgggattcctcactgcgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................ttgtcattcagagcgaagcgaagaatctcttttcttccccccgcgggattcctcacggtgttcggaatgacaaaggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-9 bit: 65.9 Len: 77 Query Start:482 Query End:558 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 218 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcgtaagcgaagaatctttttccttttcctcacgagattcctcactgcgttcggaatgacaaag...................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgtcattcagagcg-aagcgaagaatctcttttcttccccccgcgggattcctcacggtgttcggaatgacaaag...................................................................................................................................................... Subject: tfor_TF2500_TF2501|ABC transporter, ATP-binding protein:DNA mismatch repair protein|POSITIVE:POSITIVE|[2675363,2676419]|1057 HSP 1 e-value: 1.0E-7 bit: 60.0 Len: 50 Query Start:346 Query End:395 Subject Strand: NEGATIVE Subject Start: 196 Subject End: 245 .........................................................................................................................................................................................................................................................................................................................................................gcattgggctgaattaacacgccctttcagggctcttacagcagtcagca......................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................gcattgggctgaattaatgcgccctttcagggcttttacaacggtcagca......................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:484 Query End:511 Subject Strand: NEGATIVE Subject Start: 721 Subject End: 748 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgtcattcagagcgtaagcgaagaatct..................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgtcattcagagcgtaagcgaagaatct..................................................................................................................................................................................................... Subject: tfor_TF2913_TF2914|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3109178,3109484]|307 HSP 1 e-value: 4.0E-7 bit: 58.0 Len: 29 Query Start:528 Query End:556 Subject Strand: POSITIVE Subject Start: 51 Subject End: 79 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagattcctcactgcgttcggaatgacaa........................................................................................................................................................ ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagattcctcactgcgttcggaatgacaa........................................................................................................................................................ HSP 2 e-value: 7.0E-6 bit: 54.0 Len: 27 Query Start:244 Query End:270 Subject Strand: POSITIVE Subject Start: 53 Subject End: 79 ...................................................................................................................................................................................................................................................gattcctcactgcgttcggaatgacaa...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................gattcctcactgcgttcggaatgacaa...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCAACCGUCAGCUCCGCAUUCCCCCUUUGAAGGGGGGGCUGGGGGGAUGUUCAUAUCAACGUCAUGACGGGCGAACACAGAGGUUCGCCCCUACGCGGCGUACCGAAAUGGGAAUGCGCCCAACCGCCCCCCACAACAACUCAAGACCUCAACAAUUCUCUUCACUUUUCACUAUUCGUUUCUCACUUUUCACUUCCCUUGUCAUUCAGAGCGAAGCGAUGAAUCUUUUCCUUUUCGGGGCGGGAUUCCUCACUGCGUUCGGAAUGACAAAGGGACAUCCAAAUCAAUCAUUCAUUCAGGCUUCCAGCCCUCCGCUGAGGGAUUGCCCUAUUUCCCCAACGCUGCGCAUUGGGCUGAAUUAACACGCCCUUUCAGGGCUCUUACAGCAGUCAGCAUUCAGCCGUCAGCUCUACAUCCUCCUUCACUGCGCUCUUCCCCCCUUUGAAGGGGGGAGGGGGGGAUGUUCCUCUGCGUUCGGUCUUUUGUCAUUCAGAGCGUAAGCGAAGAAUCUUUUUCCUUUUCCUCACGAGAUUCCUCACUGCGUUCGGAAUGACAAAGAGGAGACGUUCGGAAUGACAAAGAGGAAGCAUUCGGAAUGACAAAGAGGAGGCGUUCGUAAUUCGUAAUUUGUCAUUCUGCUAAACGCUGACU ......((((((.((.(.(((((((((..((((((((((.((((((((((..................((((((((......))))))))...((((((((...((((((((...(((......)))..............(((..(((((.(.........................................(((((((((((((.(((((.((.((.((((((..((((....))))..)))))).)).)).))))).))))))).)))))).......................(((.....)))....).)))))..))).))))))))....)))))))).....(((((((.......((((.....)))).......((.....)).))))))).........)))))))))).....))......))))))))..)))))))))).)).((((((((((((.(((((.(..(((((((((((.(((((((.(.((.(((((((...............))))))).)).)))))))).))))))))))).(....)...).)))))....))))).))))))).((((((((((..(((.((....))..)))....))))))))))........)))))). (-249.06) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGUCAGCGUUUAGCAGAAUGACAAAUUACGAAUUACGAACGCCUCCUCUUUGUCAUUCCGAAUGCUUCCUCUUUGUCAUUCCGAACGUCUCCUCUUUGUCAUUCCGAACGCAGUGAGGAAUCUCGUGAGGAAAAGGAAAAAGAUUCUUCGCUUACGCUCUGAAUGACAAAAGACCGAACGCAGAGGAACAUCCCCCCCUCCCCCCUUCAAAGGGGGGAAGAGCGCAGUGAAGGAGGAUGUAGAGCUGACGGCUGAAUGCUGACUGCUGUAAGAGCCCUGAAAGGGCGUGUUAAUUCAGCCCAAUGCGCAGCGUUGGGGAAAUAGGGCAAUCCCUCAGCGGAGGGCUGGAAGCCUGAAUGAAUGAUUGAUUUGGAUGUCCCUUUGUCAUUCCGAACGCAGUGAGGAAUCCCGCCCCGAAAAGGAAAAGAUUCAUCGCUUCGCUCUGAAUGACAAGGGAAGUGAAAAGUGAGAAACGAAUAGUGAAAAGUGAAGAGAAUUGUUGAGGUCUUGAGUUGUUGUGGGGGGCGGUUGGGCGCAUUCCCAUUUCGGUACGCCGCGUAGGGGCGAACCUCUGUGUUCGCCCGUCAUGACGUUGAUAUGAACAUCCCCCCAGCCCCCCCUUCAAAGGGGGAAUGCGGAGCUGACGGUUGA ((((((((((((((.((((((((((.......................))))))))))....(((.((((((...(((((.((...((.(((((((((((((((.((.((.(((((((((((((....)...........))))))))))))..)).)).)))))))))............)))))))).........((((((((....))))))))....)).))))).)))))).))).........)))))))))))))).........((((.....))))........((((((((.(.((((..(((((((........(((((..(((.....((((.....))))...)))..)))))....((((((.((((((((((((.((.((.(((((.(((((.....((.....))....))))).))))).)).)).)))))))))))).........................................(((..(.(((.(((......((((.(..(.(.((((......))))...).)..).))))....((((((((......)))))))).))).))).)..)))...))))))))))))).((((((....))))))..)))).)..))..)))))) (-239.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1022 480 433 228 180 tfor:TF0540|5end_conserved_hypothetical_protein;_possible_surface_protein_567286..567516_POSITIVE 941 478 431 165 114 tfor:TF3107|5end_hypothetical_protein_3338459..3338689_POSITIVE 941 478 431 61 10 tfor:TF3106|5end_hypothetical_protein_3338355..3338585_POSITIVE 929 478 431 68 18 tfor:TF1842|5end_hypothetical_protein_1992571..1992801_POSITIVE 906 478 431 61 13 tfor:TF2745|5end_hypothetical_protein_2927562..2927792_POSITIVE 905 379 331 190 141 tfor:TF2824|5end_nucleoside-transporting_protein_nupG_3014701..3014931_POSITIVE 890 478 432 59 4 tfor:TF0828|5end_hypothetical_protein_887090..887320_POSITIVE 870 478 431 61 15 tfor:TF2746|5end_hypothetical_protein_2927996..2928226_POSITIVE 862 379 331 189 141 tfor:TF1183|5end_hypothetical_protein_1268391..1268621_POSITIVE 848 379 331 116 68 tfor:TF2191|5end_hypothetical_protein_2365934..2366164_POSITIVE 848 379 331 193 145 tfor:TF1186|5end_hypothetical_protein_1269568..1269798_POSITIVE 848 379 331 78 30 tfor:TF0822|5end_hypothetical_protein_880487..880717_POSITIVE 841 476 433 212 168 tfor:TF1840|5end_transposase_1990221..1990451_POSITIVE 823 478 431 196 154 tfor:TF2818|5end_acetylornithine_aminotransferase_3007739..3007969_POSITIVE 800 379 335 219 170 tfor:TF2478|5end_hypothetical_protein_2655375..2655605_POSITIVE 781 379 335 78 34 tfor:TF0821|5end_hypothetical_protein_879879..880109_POSITIVE 776 274 234 49 9 tfor:TF1844|5end_hypothetical_protein_1996389..1996619_POSITIVE 776 274 234 189 149 tfor:TF1182|5end_hypothetical_protein_1268565..1268795_POSITIVE 772 379 331 216 168 tfor:TF1184|5end_hypothetical_protein_1269004..1269234_POSITIVE 767 550 501 175 126 tfor:TF0542|5end_hypothetical_protein_571918..572148_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1060 480 431 131 80 tfor:TF0370|3end_hypothetical_protein_386317..386467_POSITIVE 1042 480 431 110 61 tfor:TF0821|3end_hypothetical_protein_880195..880345_POSITIVE 980 70 21 107 59 tfor:TF2651|3end_hypothetical_protein_2822014..2822164_POSITIVE 887 480 431 89 38 tfor:TF0828|3end_hypothetical_protein_887508..887658_POSITIVE 878 550 501 75 26 tfor:TF1841|3end_hypothetical_protein_1992267..1992417_POSITIVE 848 379 331 108 60 tfor:TF1185|3end_hypothetical_protein_1269563..1269713_POSITIVE 805 260 211 64 15 tfor:TF0369|3end_hypothetical_protein_386186..386336_POSITIVE 798 250 201 144 93 tfor:TF1483|3end_glycosyltransferase_family_protein_1578825..1578975_POSITIVE 781 379 335 61 17 tfor:TF0820|3end_hypothetical_protein_879942..880092_POSITIVE 772 379 331 70 22 tfor:TF1182|3end_hypothetical_protein_1268938..1269088_POSITIVE 754 379 335 82 38 tfor:TF2840|3end_hypothetical_protein_3031289..3031439_POSITIVE 700 358 311 125 77 tfor:TF2547|3end_hypothetical_protein_2730947..2731097_POSITIVE 688 570 521 64 6 tfor:TF0541|3end_conserved_hypothetical_protein_571858..572008_POSITIVE 643 464 426 151 105 tfor:TF2816|3end_hypothetical_protein_3007184..3007334_POSITIVE 584 120 78 45 1 tfor:TF1165|3end_conserved_hypothetical_protein_1245921..1246071_POSITIVE 577 527 484 40 1 tfor:TF0538|3end_hypothetical_protein_567135..567285_POSITIVE 575 347 301 134 87 tfor:TF3106|3end_hypothetical_protein_3338608..3338758_POSITIVE 554 248 201 64 13 tfor:TF1184|3end_hypothetical_protein_1269311..1269461_POSITIVE 554 248 201 64 13 tfor:TF1183|3end_hypothetical_protein_1268728..1268878_POSITIVE 535 440 391 149 82 tfor:TF1660|3end_hypothetical_protein_1775600..1775750_POSITIVE