Origin IGS: taatgtttcttggacacataggaatatacgccagtaataaagacgttattaggagaaaatcaactctgttttttttgaaatttcaacaaatataaagaccgtgtttttcagaattattgcattcaatttcgtataaaataaccgagcggtctttattaatatacgaataatgcgaatccagcgttaaaaaataagattcactctggcagaaaaggctttgccgccgagcaaaaactgaatcggataacacaacaggagttgcttcccgacgagctgatcattggcaaagcatcatttatctggaaatccatcgacccttattcccatcaaatcagatgggaacgttttatgaaatccattcagtaatatagaaaagattccccaaatatccttatctgcaacatcctatctctttccctttataagcattgtcctgattaaaaatatcagtacgataaatggcggaatatacaattttgtagagttatttatttcttttctcaaaaaaacatcttcttttttgccgagtacaaaaaaatcatctttaatattggacaatagttctaaaagaaaaaatcacacttagatgataaaataatacccctttaaatggttaaaaaaaacaaaaagaacaactcattatttggatacatcaaaaagacgctatatgtttgcaaaacaaattttaaaaccaaaat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 attttggttttaaaatttgttttgcaaacatatagcgtctttttgatgtatccaaataatgagttgttctttttgttttttttaaccatttaaaggggtattattttatcatctaagtgtgattttttcttttagaactattgtccaatattaaagatgatttttttgtactcggcaaaaaagaagatgtttttttgagaaaagaaataaataactctacaaaattgtatattccgccatttatcgtactgatatttttaatcaggacaatgcttataaagggaaagagataggatgttgcagataaggatatttggggaatcttttctatattactgaatggatttcataaaacgttcccatctgatttgatgggaataagggtcgatggatttccagataaatgatgctttgccaatgatcagctcgtcgggaagcaactcctgttgtgttatccgattcagtttttgctcggcggcaaagccttttctgccagagtgaatcttattttttaacgctggattcgcattattcgtatattaataaagaccgctcggttattttatacgaaattgaatgcaataattctgaaaaacacggtctttatatttgttgaaatttcaaaaaaaacagagttgattttctcctaataacgtctttattactggcgtatattcctatgtgtccaagaaacatta Mask Tandem Repeat Region ================================================ taatgtttcttggacacataggaatatacgccagtaataaagacgttattaggagaaaatcaactctgttttttttgaaatttcaacaaatataaagaccgtgtttttcagaattattgcattcaatttcgtataaaataaccgagcggtctttattaatatacgaataatgcgaatccagcgttaaaaaataagattcactctggcagaaaaggctttgccgccgagcaaaaactgaatcggataacacaacaggagttgcttcccgacgagctgatcattggcaaagcatcatttatctggaaatccatcgacccttattcccatcaaatcagatgggaacgttttatgaaatccattcagtaatatagaaaagattccccaaatatccttatctgcaacatcctatctctttccctttataagcattgtcctgattaaaaatatcagtacgataaatggcggaatatacaattttgtagagttatttatttcttttctcaaaaaaacatcttcttttttgccgagtacaaaaaaatcatctttaatattggacaatagttctaaaagaaaaaatcacacttagatgataaaataatacccctttaaatggttaaaaaaaacaaaaagaacaactcattatttggatacatcaaaaagacgctatatgtttgcaaaacaaattttaaaaccaaaat Find is-nt database================================================ Query_seq: TF1385:TF1386|TF1385:TF1386:conserved hypothetical protein:hypothetical protein:->->:1459545..1460242 698 taatgtttcttggacacataggaatatacgccagtaataaagacgttattaggagaaaatcaactctgttttttttgaaatttcaacaaatataaagaccgtgtttttcagaattattgcattcaatttcgtataaaataaccgagcggtctttattaatatacgaataatgcgaatccagcgttaaaaaataagattcactctggcagaaaaggctttgccgccgagcaaaaactgaatcggataacacaacaggagttgcttcccgacgagctgatcattggcaaagcatcatttatctggaaatccatcgacccttattcccatcaaatcagatgggaacgttttatgaaatccattcagtaatatagaaaagattccccaaatatccttatctgcaacatcctatctctttccctttataagcattgtcctgattaaaaatatcagtacgataaatggcggaatatacaattttgtagagttatttatttcttttctcaaaaaaacatcttcttttttgccgagtacaaaaaaatcatctttaatattggacaatagttctaaaagaaaaaatcacacttagatgataaaataatacccctttaaatggttaaaaaaaacaaaaagaacaactcattatttggatacatcaaaaagacgctatatgtttgcaaaacaaattttaaaaccaaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1385:TF1386|TF1385:TF1386:conserved hypothetical protein:hypothetical protein:->->:1459545..1460242 698 taatgtttcttggacacataggaatatacgccagtaataaagacgttattaggagaaaatcaactctgttttttttgaaatttcaacaaatataaagaccgtgtttttcagaattattgcattcaatttcgtataaaataaccgagcggtctttattaatatacgaataatgcgaatccagcgttaaaaaataagattcactctggcagaaaaggctttgccgccgagcaaaaactgaatcggataacacaacaggagttgcttcccgacgagctgatcattggcaaagcatcatttatctggaaatccatcgacccttattcccatcaaatcagatgggaacgttttatgaaatccattcagtaatatagaaaagattccccaaatatccttatctgcaacatcctatctctttccctttataagcattgtcctgattaaaaatatcagtacgataaatggcggaatatacaattttgtagagttatttatttcttttctcaaaaaaacatcttcttttttgccgagtacaaaaaaatcatctttaatattggacaatagttctaaaagaaaaaatcacacttagatgataaaataatacccctttaaatggttaaaaaaaacaaaaagaacaactcattatttggatacatcaaaaagacgctatatgtttgcaaaacaaattttaaaaccaaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1385:TF1386|TF1385:TF1386:conserved hypothetical protein:hypothetical protein:->->:1459545..1460242 698 taatgtttcttggacacataggaatatacgccagtaataaagacgttattaggagaaaatcaactctgttttttttgaaatttcaacaaatataaagaccgtgtttttcagaattattgcattcaatttcgtataaaataaccgagcggtctttattaatatacgaataatgcgaatccagcgttaaaaaataagattcactctggcagaaaaggctttgccgccgagcaaaaactgaatcggataacacaacaggagttgcttcccgacgagctgatcattggcaaagcatcatttatctggaaatccatcgacccttattcccatcaaatcagatgggaacgttttatgaaatccattcagtaatatagaaaagattccccaaatatccttatctgcaacatcctatctctttccctttataagcattgtcctgattaaaaatatcagtacgataaatggcggaatatacaattttgtagagttatttatttcttttctcaaaaaaacatcttcttttttgccgagtacaaaaaaatcatctttaatattggacaatagttctaaaagaaaaaatcacacttagatgataaaataatacccctttaaatggttaaaaaaaacaaaaagaacaactcattatttggatacatcaaaaagacgctatatgtttgcaaaacaaattttaaaaccaaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taatgtttcttggacacataggaatatacgccagtaataaagacgttattaggagaaaatcaactctgttttttttgaaatttcaacaaatataaagaccgtgtttttcagaattattgcattcaatttcgtataaaataaccgagcggtctttattaatatacgaataatgcgaatccagcgttaaaaaataagattcactctggcagaaaaggctttgccgccgagcaaaaactgaatcggataacacaacaggagttgcttcccgacgagctgatcattggcaaagcatcatttatctggaaatccatcgacccttattcccatcaaatcagatgggaacgttttatgaaatccattcagtaatatagaaaagattccccaaatatccttatctgcaacatcctatctctttccctttataagcattgtcctgattaaaaatatcagtacgataaatggcggaatatacaattttgtagagttatttatttcttttctcaaaaaaacatcttcttttttgccgagtacaaaaaaatcatctttaatattggacaatagttctaaaagaaaaaatcacacttagatgataaaataatacccctttaaatggttaaaaaaaacaaaaagaacaactcattatttggatacatcaaaaagacgctatatgtttgcaaaacaaattttaaaaccaaaat Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 3 End: 92 .. M F L G H I G I Y A S N K D V I R R K S T L F F L K F Q Q I .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 56 Strand: + Start: 196 End: 363 ................................................................................................................................................................................................... M H S G R K G F A A E Q K L N R I T Q Q E L L P D E L I I G K A S F I W K S I D P Y S H Q I R W E R F M K S I Q ............................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 469 End: 558 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Q F C R V I Y F F S Q K N I F F F A E Y K K I I F N I G Q ............................................................................................................................................ Protein_Len: 60 Strand: + Start: 368 End: 583 ............................................................................................................................................................................................................................................................................................................................................................................... M E K I P Q I S L S A T S Y L F P F I S I V L I K N I S T I N G G I Y N F V E L F I S F L K K T S S F L P S T K K S S L ................................................................................................................... Protein_Len: 30 Strand: - Start: 609 End: 698 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I T L F F L F F L E N N P Y M L F V S Y T Q L V F K L V L M Protein_Len: 50 Strand: - Start: 409 End: 558 ........................................................................................................................................................................................................................................................................................................................................................................................................................ R K G K I L M T R I L F I L V I F P P I Y L K T S N N I E K R L F V D E K K G L V F F D D K I N S M ............................................................................................................................................ Protein_Len: 31 Strand: - Start: 295 End: 387 ...................................................................................................................................................................................................................................................................................................... K D P F G D V R I G M L D S P F T K H F G N L L I S F I G W M ....................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 201 End: 311 ........................................................................................................................................................................................................ E P L F P K A A S C F S F R I V C C S N S G S S S I M P L A D N I Q F D M ................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 55 Strand: - Start: 86 End: 250 ..................................................................................... C I Y L G H K E S N N C E I E Y L I V S R D K N I Y S Y H S D L T L F Y S E S Q C F L S Q R R A F V S D S L M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 42 Strand: - Start: 52 End: 177 ................................................... S F I L E T K K S I E V F I F V T N K L I I A N L K T Y F L R A T K I L I R I I R M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taatgtttcttggacacataggaatatacgccagtaataaagacgttattaggagaaaatcaactctgttttttttgaaatttcaacaaatataaagaccgtgtttttcagaattattgcattcaatttcgtataaaataaccgagcggtctttattaatatacgaataatgcgaatccagcgttaaaaaataagattcactctggcagaaaaggctttgccgccgagcaaaaactgaatcggataacacaacaggagttgcttcccgacgagctgatcattggcaaagcatcatttatctggaaatccatcgacccttattcccatcaaatcagatgggaacgttttatgaaatccattcagtaatatagaaaagattccccaaatatccttatctgcaacatcctatctctttccctttataagcattgtcctgattaaaaatatcagtacgataaatggcggaatatacaattttgtagagttatttatttcttttctcaaaaaaacatcttcttttttgccgagtacaaaaaaatcatctttaatattggacaatagttctaaaagaaaaaatcacacttagatgataaaataatacccctttaaatggttaaaaaaaacaaaaagaacaactcattatttggatacatcaaaaagacgctatatgtttgcaaaacaaattttaaaaccaaaat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taatgtttcttggacacataggaatatacgccagtaataaagacgttattaggagaaaatcaactctgttttttttgaaatttcaacaaatataaagaccgtgtttttcagaattattgcattcaatttcgtataaaataaccgagcggtctttattaatatacgaataatgcgaatccagcgttaaaaaataagattcactctggcagaaaaggctttgccgccgagcaaaaactgaatcggataacacaacaggagttgcttcccgacgagctgatcattggcaaagcatcatttatctggaaatccatcgacccttattcccatcaaatcagatgggaacgttttatgaaatccattcagtaatatagaaaagattccccaaatatccttatctgcaacatcctatctctttccctttataagcattgtcctgattaaaaatatcagtacgataaatggcggaatatacaattttgtagagttatttatttcttttctcaaaaaaacatcttcttttttgccgagtacaaaaaaatcatctttaatattggacaatagttctaaaagaaaaaatcacacttagatgataaaataatacccctttaaatggttaaaaaaaacaaaaagaacaactcattatttggatacatcaaaaagacgctatatgtttgcaaaacaaattttaaaaccaaaat Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TF1385:TF1386|TF1385:TF1386:conserved hypothetical protein:hypothetical protein:->->:1459545..1460242 698 taatgtttcttggacacataggaatatacgccagtaataaagacgttattaggagaaaatcaactctgttttttttgaaatttcaacaaatataaagaccgtgtttttcagaattattgcattcaatttcgtataaaataaccgagcggtctttattaatatacgaataatgcgaatccagcgttaaaaaataagattcactctggcagaaaaggctttgccgccgagcaaaaactgaatcggataacacaacaggagttgcttcccgacgagctgatcattggcaaagcatcatttatctggaaatccatcgacccttattcccatcaaatcagatgggaacgttttatgaaatccattcagtaatatagaaaagattccccaaatatccttatctgcaacatcctatctctttccctttataagcattgtcctgattaaaaatatcagtacgataaatggcggaatatacaattttgtagagttatttatttcttttctcaaaaaaacatcttcttttttgccgagtacaaaaaaatcatctttaatattggacaatagttctaaaagaaaaaatcacacttagatgataaaataatacccctttaaatggttaaaaaaaacaaaaagaacaactcattatttggatacatcaaaaagacgctatatgtttgcaaaacaaattttaaaaccaaaat Intra-Species Hit: Count: 1 Min: 1 Max: 698 Len: 698 Subject: tfor_TF1385_TF1386|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1459545,1460242]|698 HSP 1 e-value: 0.0 bit: 1088.0 Len: 615 Query Start:1 Query End:615 Subject Strand: POSITIVE Subject Start: 1 Subject End: 615 taatgtttcttggacacataggaatatacgccagtaataaagacgttattaggagaaaatcaactctgnnnnnnnngaaatttcaacaaatataaagaccgtgtttttcagaattattgcattcaatttcgtataaaataaccgagcggtctttattaatatacgaataatgcgaatccagcgttaaaaaataagattcactctggcagaaaaggctttgccgccgagcaaaaactgaatcggataacacaacaggagttgcttcccgacgagctgatcattggcaaagcatcatttatctggaaatccatcgacccttattcccatcaaatcagatgggaacgttttatgaaatccattcagtaatatagaaaagattccccaaatatccttatctgcaacatcctatctctttccctttataagcattgtcctgattaaaaatatcagtacgataaatggcggaatatacaattttgtagagttatttatttcttttctcnnnnnnncatcttcttttttgccgagtacnnnnnnntcatctttaatattggacaatagttctaaaagaaaaaatcacacttagatgataaaataatacccctttaaatggtt................................................................................... taatgtttcttggacacataggaatatacgccagtaataaagacgttattaggagaaaatcaactctgttttttttgaaatttcaacaaatataaagaccgtgtttttcagaattattgcattcaatttcgtataaaataaccgagcggtctttattaatatacgaataatgcgaatccagcgttaaaaaataagattcactctggcagaaaaggctttgccgccgagcaaaaactgaatcggataacacaacaggagttgcttcccgacgagctgatcattggcaaagcatcatttatctggaaatccatcgacccttattcccatcaaatcagatgggaacgttttatgaaatccattcagtaatatagaaaagattccccaaatatccttatctgcaacatcctatctctttccctttataagcattgtcctgattaaaaatatcagtacgataaatggcggaatatacaattttgtagagttatttatttcttttctcaaaaaaacatcttcttttttgccgagtacaaaaaaatcatctttaatattggacaatagttctaaaagaaaaaatcacacttagatgataaaataatacccctttaaatggtt................................................................................... HSP 2 e-value: 6.0E-31 bit: 137.0 Len: 69 Query Start:630 Query End:698 Subject Strand: POSITIVE Subject Start: 630 Subject End: 698 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaacaactcattatttggatacatcaaaaagacgctatatgtttgcaaaacaaattttaaaaccaaaat .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaacaactcattatttggatacatcaaaaagacgctatatgtttgcaaaacaaattttaaaaccaaaat Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUGUUUCUUGGACACAUAGGAAUAUACGCCAGUAAUAAAGACGUUAUUAGGAGAAAAUCAACUCUGUUUUUUUUGAAAUUUCAACAAAUAUAAAGACCGUGUUUUUCAGAAUUAUUGCAUUCAAUUUCGUAUAAAAUAACCGAGCGGUCUUUAUUAAUAUACGAAUAAUGCGAAUCCAGCGUUAAAAAAUAAGAUUCACUCUGGCAGAAAAGGCUUUGCCGCCGAGCAAAAACUGAAUCGGAUAACACAACAGGAGUUGCUUCCCGACGAGCUGAUCAUUGGCAAAGCAUCAUUUAUCUGGAAAUCCAUCGACCCUUAUUCCCAUCAAAUCAGAUGGGAACGUUUUAUGAAAUCCAUUCAGUAAUAUAGAAAAGAUUCCCCAAAUAUCCUUAUCUGCAACAUCCUAUCUCUUUCCCUUUAUAAGCAUUGUCCUGAUUAAAAAUAUCAGUACGAUAAAUGGCGGAAUAUACAAUUUUGUAGAGUUAUUUAUUUCUUUUCUCAAAAAAACAUCUUCUUUUUUGCCGAGUACAAAAAAAUCAUCUUUAAUAUUGGACAAUAGUUCUAAAAGAAAAAAUCACACUUAGAUGAUAAAAUAAUACCCCUUUAAAUGGUUAAAAAAAACAAAAAGAACAACUCAUUAUUUGGAUACAUCAAAAAGACGCUAUAUGUUUGCAAAACAAAUUUUAAAACCAAAAU ...(((((..(..(((.((((.......(.((((((((......)))))).)).)....((.....(((((((((((..((((....)))).....((((((.(((((.((((((((((((((....((((((((.(((((((....)))...))))..)))))))).)))))...(((((..(((((...........((((.(((((((((((.(((((......))))).(((((((.((((........(((.(((((((.((((.((.....)).))))..))))..........(((....)))..))))))..((((((((......))))))))...........))))))))))).....((((((((......(((((......(((((((.((..(((....((((((........(((((.(((((.......))))).)))))....)).)))).)))..)).)))))))..)))))...)))))))).............)))))))))))))))..............)))))..))))).))))))))).)))))....((((........))))..................))))))........)))))))))))........(((((.....)))))..))..)))).)))..)..)))))................. (-139.41) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUUUGGUUUUAAAAUUUGUUUUGCAAACAUAUAGCGUCUUUUUGAUGUAUCCAAAUAAUGAGUUGUUCUUUUUGUUUUUUUUAACCAUUUAAAGGGGUAUUAUUUUAUCAUCUAAGUGUGAUUUUUUCUUUUAGAACUAUUGUCCAAUAUUAAAGAUGAUUUUUUUGUACUCGGCAAAAAAGAAGAUGUUUUUUUGAGAAAAGAAAUAAAUAACUCUACAAAAUUGUAUAUUCCGCCAUUUAUCGUACUGAUAUUUUUAAUCAGGACAAUGCUUAUAAAGGGAAAGAGAUAGGAUGUUGCAGAUAAGGAUAUUUGGGGAAUCUUUUCUAUAUUACUGAAUGGAUUUCAUAAAACGUUCCCAUCUGAUUUGAUGGGAAUAAGGGUCGAUGGAUUUCCAGAUAAAUGAUGCUUUGCCAAUGAUCAGCUCGUCGGGAAGCAACUCCUGUUGUGUUAUCCGAUUCAGUUUUUGCUCGGCGGCAAAGCCUUUUCUGCCAGAGUGAAUCUUAUUUUUUAACGCUGGAUUCGCAUUAUUCGUAUAUUAAUAAAGACCGCUCGGUUAUUUUAUACGAAAUUGAAUGCAAUAAUUCUGAAAAACACGGUCUUUAUAUUUGUUGAAAUUUCAAAAAAAACAGAGUUGAUUUUCUCCUAAUAACGUCUUUAUUACUGGCGUAUAUUCCUAUGUGUCCAAGAAACAUUA .................((((((....((((((((((((.....))))............(((..(((..(((((((((((((..((((((..(((((((......)))).)))....(((((.((((((((((.((.((((((((...((((((((((.(((((((((.....)))))))))....(((((((((....)))))))))........((((....)))).......................))))))))))..)))))))).)).)))))))))).(((.(((((.((.((((((....)))))).)).))))).)))..))))).)))))).(((((((((..(((((((((......)))))))))((((..((.((..((((.(((........((((((((..(((.(((((.((((((..(((((....)))))....))))))..)))...)).)))..))))))))........((((..((((........))))...))))....(((((.((((((((.....((.((((....)))).)).))))))))....)))))......)))))))..))))..))))...)))).)))))....)))))))))))))..)))...)))......(((((.........)))))......))))))))....))))))... (-166.90) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 370 258 216 183 140 tfor:TF2920|5end_conserved_hypothetical_protein_3115903..3116133_POSITIVE 363 244 206 89 49 tfor:TF1742|5end_TPR_repeat-containing_protein_1873129..1873359_POSITIVE 339 293 257 49 4 tfor:TF2165|5end_hypothetical_protein_2341654..2341884_POSITIVE 339 226 196 57 23 tfor:TF1170|5end_conserved_hypothetical_protein_1251862..1252092_POSITIVE 339 226 196 45 11 tfor:TF1171|5end_ABC_transporter,_ATP-binding_protein_1251850..1252080_POSITIVE 338 229 182 88 49 tfor:TF2499|5end_possible_thioesterase_family_protein_2673903..2674133_POSITIVE 337 286 242 59 5 tfor:TF1298|5end_possible_membrane_protein_1380107..1380337_POSITIVE 332 285 241 87 40 tfor:TF0690|5end_preprotein_translocase_subunit_735243..735473_POSITIVE 332 258 216 200 161 tfor:TF0133|5end_transposase_element_145174..145404_POSITIVE 330 557 512 144 95 tfor:TF0086|5end_ABC_transporter,_ATP-binding_protein_92434..92664_POSITIVE 328 228 195 179 145 tfor:TF0992|5end_hypothetical_protein_1048251..1048481_POSITIVE 327 303 261 120 72 tfor:TF0600|5end_oxidoreductase/dehydrogenase_630083..630313_POSITIVE 326 246 201 104 55 tfor:TF2192|5end_possible__outer_membrane_protein_2366392..2366622_POSITIVE 325 244 205 53 16 tfor:TF2657|5end_conserved_hypothetical_protein_2829729..2829959_POSITIVE 325 250 204 97 48 tfor:TF2039|5end_possible_cell-cycle_regulation_histidine_triad_(HIT)_protein_2199318..2199548_POSITIVE 325 293 258 139 94 tfor:TF0463|5end_precorrin-6Y_C5,15-methyltransferase_479015..479245_POSITIVE 324 290 250 228 182 tfor:TF2130|5end_conserved_hypothetical_protein;_possible_permease_2306486..2306716_POSITIVE 320 293 252 113 69 tfor:TF2204|5end_conserved_hypothetical_protein_2378866..2379096_POSITIVE 320 244 201 207 162 tfor:TF1067|5end_conserved_hypothetical_protein_1136867..1137097_POSITIVE 318 246 205 176 140 tfor:TF0856|5end_conserved_hypothetical_protein_908119..908349_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 602 690 641 79 30 tfor:TF2027|3end_conserved_hypothetical_protein_2184176..2184326_POSITIVE 330 557 512 144 95 tfor:TF0085|3end_ABC_transporter,_ATP-binding_protein_92514..92664_POSITIVE 327 303 261 87 39 tfor:TF0599|3end_hypothetical_protein_630130..630280_POSITIVE 325 244 205 66 29 tfor:TF2656|3end_valyl-tRNA_synthetase_2829822..2829972_POSITIVE 325 293 258 139 94 tfor:TF0462|3end_possible_cobalamin_biosynthesis_precorrin-3_methylase_479095..479245_POSITIVE 320 244 201 118 73 tfor:TF1066|3end_hypothetical_protein_1136858..1137008_POSITIVE 311 246 201 75 16 tfor:TF1022|3end_chromosomal_replication_initiator_ATPase,_DnaA_1079259..1079409_POSITIVE 307 290 241 58 5 tfor:TF0023|3end_possible_response_element_in_two_component_regulation_20233..20383_POSITIVE 306 305 261 53 9 tfor:TF0365|3end_hypothetical_protein_383152..383302_POSITIVE 303 251 216 149 114 tfor:TF2919|3end_5'-nucleotidase_family_protein_3115957..3116107_POSITIVE 300 305 261 51 7 tfor:TF0360|3end_hypothetical_protein_379538..379688_POSITIVE 299 240 197 150 104 tfor:TF2567|3end_30S_ribosomal_protein_S14_2741213..2741363_POSITIVE 299 285 241 141 91 tfor:TF0002|3end_hypothetical_protein_647..797_POSITIVE 297 277 235 66 10 tfor:TF2377|3end_orotidine_5'_phosphate_decarboxylase_2542706..2542856_POSITIVE 296 245 212 45 9 tfor:TF2755|3end_hypothetical_protein_2941053..2941203_POSITIVE 295 300 254 143 94 tfor:TF0051|3end_hypothetical_protein_57568..57718_POSITIVE 294 285 241 137 79 tfor:TF2336|3end_conserved_hypothetical_protein_2498159..2498309_POSITIVE 289 300 253 57 6 tfor:TF2915|3end_hypothetical_protein_3111578..3111728_POSITIVE 289 297 259 79 30 tfor:TF0516|3end_conserved_hypothetical_protein;_possible_membrane_protein_540693..540843_POSITIVE 289 297 253 131 76 tfor:TF0283|3end_possible_nicotinamide_mononucleotide_transporter_312074..312224_POSITIVE