Origin IGS: taaatctatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgaaccaatatttttatctaaaatagatttggtgtgaaatatatgtgaagtataaatgtgcggtgtgcatgtattattcgttagatatgagaaatggtataagatatttgagcgtttgatgatcggtttgaaagagtatgctactccaatttgatacaaggttaagaatttgcagaagacaagtttatctgaaatcaaagacaaaaggctaatctgaatgactgatcatgacaaagcatcatatataaatggggagaagccgccccccccctgaaatatagtaggcaataatataaataaacttttatcatgaaagtattgggtaaaataagtttacattcattagaggaaaagtctctatcagattattctatgaggggcttgaaagggggagccacatgcacttgtggttgccactacgcaaatggtggtggttcttcgtccggatggaatgatgcaacaaactattgtgatggcaaggaatcatatggtggaggttctgagtcttgtggctgttgttcttccgaaggcgtaaaactcagtgatttttggaaagggtgattatatcgctcgaaataaagatgtcaagacctattttgtaagaagtttgttttgacatcttttgcttatataattacttttattc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gaataaaagtaattatataagcaaaagatgtcaaaacaaacttcttacaaaataggtcttgacatctttatttcgagcgatataatcaccctttccaaaaatcactgagttttacgccttcggaagaacaacagccacaagactcagaacctccaccatatgattccttgccatcacaatagtttgttgcatcattccatccggacgaagaaccaccaccatttgcgtagtggcaaccacaagtgcatgtggctccccctttcaagcccctcatagaataatctgatagagacttttcctctaatgaatgtaaacttattttacccaatactttcatgataaaagtttatttatattattgcctactatatttcagggggggggcggcttctccccatttatatatgatgctttgtcatgatcagtcattcagattagccttttgtctttgatttcagataaacttgtcttctgcaaattcttaaccttgtatcaaattggagtagcatactctttcaaaccgatcatcaaacgctcaaatatcttataccatttctcatatctaacgaataatacatgcacaccgcacatttatacttcacatatatttcacaccaaatctattttagataaaaatattggttcaaagataatcatcctctccctcttgctccaatttatactccgcttttctaacgaacggtagcatttttcctaacgaacggtcgtttttccccgataaacggtatatttgtctttgactgccgtttcatagattta Mask Tandem Repeat Region ================================================ taaatctatgaaacggcagtcaaagacaaatataccgtttatcggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggagtataaattggagcaagagggagaggatgattatctttgaaccaatatttttatctaaaatagatttggtgtgaaatatatgtgaagtataaatgtgcggtgtgcatgtattattcgttagatatgagaaatggtataagatatttgagcgtttgatgatcggtttgaaagagtatgctactccaatttgatacaaggttaagaatttgcagaagacaagtttatctgaaatcaaagacaaaaggctaatctgaatgactgatcatgacaaagcatcatatataaatggggagaagccgccccccccctgaaatatagtaggcaataatataaataaacttttatcatgaaagtattgggtaaaataagtttacattcattagaggaaaagtctctatcagattattctatgaggggcttgaaagggggagccacatgcacttgtggttgccactacgcaaatggtggtggttcttcgtccggatggaatgatgcaacaaactattgtgatggcaaggaatcatatggtggaggttctgagtcttgtggctgttgttcttccgaaggcgtaaaactcagtgatttttggaaagggtgattatatcgctcgaaataaagatgtcaagacctattttgtaagaagtttgttttgacatcttttgcttatataattacttttattc Find is-nt database================================================ Query_seq: TF1076:TF1077|TF1076:TF1077:possible glycerol kinase:conserved hypothetical protein:->->:1145742..1146521 780 taaatctatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgaaccaatatttttatctaaaatagatttggtgtgaaatatatgtgaagtataaatgtgcggtgtgcatgtattattcgttagatatgagaaatggtataagatatttgagcgtttgatgatcggtttgaaagagtatgctactccaatttgatacaaggttaagaatttgcagaagacaagtttatctgaaatcaaagacaaaaggctaatctgaatgactgatcatgacaaagcatcatatataaatggggagaagccgccccccccctgaaatatagtaggcaataatataaataaacttttatcatgaaagtattgggtaaaataagtttacattcattagaggaaaagtctctatcagattattctatgaggggcttgaaagggggagccacatgcacttgtggttgccactacgcaaatggtggtggttcttcgtccggatggaatgatgcaacaaactattgtgatggcaaggaatcatatggtggaggttctgagtcttgtggctgttgttcttccgaaggcgtaaaactcagtgatttttggaaagggtgattatatcgctcgaaataaagatgtcaagacctattttgtaagaagtttgttttgacatcttttgcttatataattacttttattc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1076:TF1077|TF1076:TF1077:possible glycerol kinase:conserved hypothetical protein:->->:1145742..1146521 780 taaatctatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgaaccaatatttttatctaaaatagatttggtgtgaaatatatgtgaagtataaatgtgcggtgtgcatgtattattcgttagatatgagaaatggtataagatatttgagcgtttgatgatcggtttgaaagagtatgctactccaatttgatacaaggttaagaatttgcagaagacaagtttatctgaaatcaaagacaaaaggctaatctgaatgactgatcatgacaaagcatcatatataaatggggagaagccgccccccccctgaaatatagtaggcaataatataaataaacttttatcatgaaagtattgggtaaaataagtttacattcattagaggaaaagtctctatcagattattctatgaggggcttgaaagggggagccacatgcacttgtggttgccactacgcaaatggtggtggttcttcgtccggatggaatgatgcaacaaactattgtgatggcaaggaatcatatggtggaggttctgagtcttgtggctgttgttcttccgaaggcgtaaaactcagtgatttttggaaagggtgattatatcgctcgaaataaagatgtcaagacctattttgtaagaagtttgttttgacatcttttgcttatataattacttttattc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1076:TF1077|TF1076:TF1077:possible glycerol kinase:conserved hypothetical protein:->->:1145742..1146521 780 taaatctatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgaaccaatatttttatctaaaatagatttggtgtgaaatatatgtgaagtataaatgtgcggtgtgcatgtattattcgttagatatgagaaatggtataagatatttgagcgtttgatgatcggtttgaaagagtatgctactccaatttgatacaaggttaagaatttgcagaagacaagtttatctgaaatcaaagacaaaaggctaatctgaatgactgatcatgacaaagcatcatatataaatggggagaagccgccccccccctgaaatatagtaggcaataatataaataaacttttatcatgaaagtattgggtaaaataagtttacattcattagaggaaaagtctctatcagattattctatgaggggcttgaaagggggagccacatgcacttgtggttgccactacgcaaatggtggtggttcttcgtccggatggaatgatgcaacaaactattgtgatggcaaggaatcatatggtggaggttctgagtcttgtggctgttgttcttccgaaggcgtaaaactcagtgatttttggaaagggtgattatatcgctcgaaataaagatgtcaagacctattttgtaagaagtttgttttgacatcttttgcttatataattacttttattc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaatctatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgaaccaatatttttatctaaaatagatttggtgtgaaatatatgtgaagtataaatgtgcggtgtgcatgtattattcgttagatatgagaaatggtataagatatttgagcgtttgatgatcggtttgaaagagtatgctactccaatttgatacaaggttaagaatttgcagaagacaagtttatctgaaatcaaagacaaaaggctaatctgaatgactgatcatgacaaagcatcatatataaatggggagaagccgccccccccctgaaatatagtaggcaataatataaataaacttttatcatgaaagtattgggtaaaataagtttacattcattagaggaaaagtctctatcagattattctatgaggggcttgaaagggggagccacatgcacttgtggttgccactacgcaaatggtggtggttcttcgtccggatggaatgatgcaacaaactattgtgatggcaaggaatcatatggtggaggttctgagtcttgtggctgttgttcttccgaaggcgtaaaactcagtgatttttggaaagggtgattatatcgctcgaaataaagatgtcaagacctattttgtaagaagtttgttttgacatcttttgcttatataattacttttattc Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 30 End: 134 ............................. M Y R L S G K N D R S L G K M L P F V R K A E Y K L E Q E G E D D Y L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 161 End: 250 ................................................................................................................................................................ M W C E I Y V K Y K C A V C M Y Y S L D M R N G I R Y L S V .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: + Start: 190 End: 285 ............................................................................................................................................................................................. M C G V H V L F V R Y E K W Y K I F E R L M I G L K E Y A T P I ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 476 End: 586 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M R G K V S I R L F Y E G L E R G S H M H L W L P L R K W W W F F V R M E .................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 541 End: 666 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M V A T T Q M V V V L R P D G M M Q Q T I V M A R N H M V E V L S L V A V V L P K A .................................................................................................................. Protein_Len: 60 Strand: + Start: 441 End: 692 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................ M M K V L G K I S L H S L E E K S L S D Y S M R G L K G G A T C T C G C H Y A N G G G S S S G W N D A T N Y C D G K E S ........................................................................................ Protein_Len: 38 Strand: - Start: 508 End: 621 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S P S S L P L W M C K H N G S R L H H H N K T R I S H H L L S N H H C P I M ............................................................................................................................................................... Protein_Len: 37 Strand: - Start: 498 End: 608 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. I I R H P A Q F P S G C A S T T A V V C I T T T R R G S P I I C C V I T M ............................................................................................................................................................................ Protein_Len: 44 Strand: - Start: 332 End: 463 ........................................................................................................................................................................................................................................................................................................................................... L C F A L R F S Q D H C L M M Y L H P S A A G G R F Y L L C Y Y L Y V K I M F T N P L M ............................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: - Start: 211 End: 309 .................................................................................................................................................................................................................. E N S I L F P I L Y K L T Q H D T Q F L I S S W N S V L N L I Q M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 78 End: 353 ............................................................................. I H S T Y I H P T C T N N T L Y S F H Y L I N S R K I I P K F S Y A V G I Q Y L T L F K C F V L K D S I L S L L S I Q M ........................................................................................................................................................................................................................................................................................................................................................................................................................................... taaatctatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgaaccaatatttttatctaaaatagatttggtgtgaaatatatgtgaagtataaatgtgcggtgtgcatgtattattcgttagatatgagaaatggtataagatatttgagcgtttgatgatcggtttgaaagagtatgctactccaatttgatacaaggttaagaatttgcagaagacaagtttatctgaaatcaaagacaaaaggctaatctgaatgactgatcatgacaaagcatcatatataaatggggagaagccgccccccccctgaaatatagtaggcaataatataaataaacttttatcatgaaagtattgggtaaaataagtttacattcattagaggaaaagtctctatcagattattctatgaggggcttgaaagggggagccacatgcacttgtggttgccactacgcaaatggtggtggttcttcgtccggatggaatgatgcaacaaactattgtgatggcaaggaatcatatggtggaggttctgagtcttgtggctgttgttcttccgaaggcgtaaaactcagtgatttttggaaagggtgattatatcgctcgaaataaagatgtcaagacctattttgtaagaagtttgttttgacatcttttgcttatataattacttttattc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 144 End: 173 ...............................................................................................................................................TTTCACACCAAATCTATTTTAGATAAAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaatctatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgaaccaatatttttatctaaaatagatttggtgtgaaatatatgtgaagtataaatgtgcggtgtgcatgtattattcgttagatatgagaaatggtataagatatttgagcgtttgatgatcggtttgaaagagtatgctactccaatttgatacaaggttaagaatttgcagaagacaagtttatctgaaatcaaagacaaaaggctaatctgaatgactgatcatgacaaagcatcatatataaatggggagaagccgccccccccctgaaatatagtaggcaataatataaataaacttttatcatgaaagtattgggtaaaataagtttacattcattagaggaaaagtctctatcagattattctatgaggggcttgaaagggggagccacatgcacttgtggttgccactacgcaaatggtggtggttcttcgtccggatggaatgatgcaacaaactattgtgatggcaaggaatcatatggtggaggttctgagtcttgtggctgttgttcttccgaaggcgtaaaactcagtgatttttggaaagggtgattatatcgctcgaaataaagatgtcaagacctattttgtaagaagtttgttttgacatcttttgcttatataattacttttattc Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 70 HP_score: -8.9 Tail_Score: -3.08656 Start: 385 End: 405 Full_Region: gcctactatatttca ggggggggg cgg cttctcccc atttatatatgatgc ................................................................................................................................................................................................................................................................................................................................................................................................gggggggggcggcttctcccc....................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 41 HP_score: -2.9 Tail_Score: -2.60075 Start: 457 End: 471 Full_Region: TCATGAAAGTATTGG GTAAA ATAAG TTTAC ATTCATTAGAGGAAA ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATAAGTTTAC..................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 60 HP_score: -4.7 Tail_Score: -3.72324 Start: 548 End: 568 Full_Region: ATGCACTTGTGGTTG CCACTAC GCAAATG GTGGTGG TTCTTCGTCCGGATG ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTACGCAAATGGTGGTGG.................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TF1076:TF1077|TF1076:TF1077:possible glycerol kinase:conserved hypothetical protein:->->:1145742..1146521 780 taaatctatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgaaccaatatttttatctaaaatagatttggtgtgaaatatatgtgaagtataaatgtgcggtgtgcatgtattattcgttagatatgagaaatggtataagatatttgagcgtttgatgatcggtttgaaagagtatgctactccaatttgatacaaggttaagaatttgcagaagacaagtttatctgaaatcaaagacaaaaggctaatctgaatgactgatcatgacaaagcatcatatataaatggggagaagccgccccccccctgaaatatagtaggcaataatataaataaacttttatcatgaaagtattgggtaaaataagtttacattcattagaggaaaagtctctatcagattattctatgaggggcttgaaagggggagccacatgcacttgtggttgccactacgcaaatggtggtggttcttcgtccggatggaatgatgcaacaaactattgtgatggcaaggaatcatatggtggaggttctgagtcttgtggctgttgttcttccgaaggcgtaaaactcagtgatttttggaaagggtgattatatcgctcgaaataaagatgtcaagacctattttgtaagaagtttgttttgacatcttttgcttatataattacttttattc Intra-Species Hit: Count: 5 Min: 1 Max: 780 Len: 780 Subject: tfor_TF1076_TF1077|possible glycerol kinase:conserved hypothetical protein|POSITIVE:POSITIVE|[1145742,1146521]|780 HSP 1 e-value: 0.0 bit: 1493.0 Len: 780 Query Start:1 Query End:780 Subject Strand: POSITIVE Subject Start: 1 Subject End: 780 taaatctatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgaaccaatatttttatctaaaatagatttggtgtgaaatatatgtgaagtataaatgtgcggtgtgcatgtattattcgttagatatgagaaatggtataagatatttgagcgtttgatgatcggtttgaaagagtatgctactccaatttgatacaaggttaagaatttgcagaagacaagtttatctgaaatcaaagacaaaaggctaatctgaatgactgatcatgacaaagcatcatatataaatggggagaagccgnnnnnnnnntgaaatatagtaggcaataatataaataaacttttatcatgaaagtattgggtaaaataagtttacattcattagaggaaaagtctctatcagattattctatgaggggcttgaaagggggagccacatgcacttgtggttgccactacgcaaatggtggtggttcttcgtccggatggaatgatgcaacaaactattgtgatggcaaggaatcatatggtggaggttctgagtcttgtggctgttgttcttccgaaggcgtaaaactcagtgatttttggaaagggtgattatatcgctcgaaataaagatgtcaagacctattttgtaagaagtttgttttgacatcttttgcttatataattacttttattc taaatctatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgaaccaatatttttatctaaaatagatttggtgtgaaatatatgtgaagtataaatgtgcggtgtgcatgtattattcgttagatatgagaaatggtataagatatttgagcgtttgatgatcggtttgaaagagtatgctactccaatttgatacaaggttaagaatttgcagaagacaagtttatctgaaatcaaagacaaaaggctaatctgaatgactgatcatgacaaagcatcatatataaatggggagaagccgccccccccctgaaatatagtaggcaataatataaataaacttttatcatgaaagtattgggtaaaataagtttacattcattagaggaaaagtctctatcagattattctatgaggggcttgaaagggggagccacatgcacttgtggttgccactacgcaaatggtggtggttcttcgtccggatggaatgatgcaacaaactattgtgatggcaaggaatcatatggtggaggttctgagtcttgtggctgttgttcttccgaaggcgtaaaactcagtgatttttggaaagggtgattatatcgctcgaaataaagatgtcaagacctattttgtaagaagtttgttttgacatcttttgcttatataattacttttattc Subject: tfor_TF1071_TF1072|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1141748,1142530]|783 HSP 1 e-value: 1.0E-56 bit: 222.0 Len: 136 Query Start:1 Query End:136 Subject Strand: POSITIVE Subject Start: 87 Subject End: 222 taaatctatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taaatctatgaaacggcagtcaagggcaaatataccgtttatcgaaaaaaaacgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1096_TF1097|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1165418,1165707]|290 HSP 1 e-value: 3.0E-48 bit: 194.0 Len: 110 Query Start:27 Query End:136 Subject Strand: POSITIVE Subject Start: 155 Subject End: 264 ..........................caaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................caaatataccgtttatcgggaaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattagagcaagagggagaggataattatctttg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1117_TF1118|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1189512,1191445]|1934 HSP 1 e-value: 8.0E-46 bit: 186.0 Len: 130 Query Start:7 Query End:136 Subject Strand: POSITIVE Subject Start: 1477 Subject End: 1606 ......tatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......tatgaaacagcagtcaagggcaaatataccgtttatcggaaaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagaaagggaggataattatctttg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1104_TF1105|hypothetical protein:arylsulfatase regulator; Fe-S oxidoreductase|POSITIVE:POSITIVE|[1172255,1172855]|601 HSP 1 e-value: 8.0E-46 bit: 186.0 Len: 130 Query Start:7 Query End:136 Subject Strand: POSITIVE Subject Start: 129 Subject End: 258 ......tatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......tatgaaacggcagttaagggcaaatataccgtttatcggaaaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagaaagggaggataattatctttg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAUCUAUGAAACGGCAGUCAAAGACAAAUAUACCGUUUAUCGGGGAAAAACGACCGUUCGUUAGGAAAAAUGCUACCGUUCGUUAGAAAAGCGGAGUAUAAAUUGGAGCAAGAGGGAGAGGAUGAUUAUCUUUGAACCAAUAUUUUUAUCUAAAAUAGAUUUGGUGUGAAAUAUAUGUGAAGUAUAAAUGUGCGGUGUGCAUGUAUUAUUCGUUAGAUAUGAGAAAUGGUAUAAGAUAUUUGAGCGUUUGAUGAUCGGUUUGAAAGAGUAUGCUACUCCAAUUUGAUACAAGGUUAAGAAUUUGCAGAAGACAAGUUUAUCUGAAAUCAAAGACAAAAGGCUAAUCUGAAUGACUGAUCAUGACAAAGCAUCAUAUAUAAAUGGGGAGAAGCCGCCCCCCCCCUGAAAUAUAGUAGGCAAUAAUAUAAAUAAACUUUUAUCAUGAAAGUAUUGGGUAAAAUAAGUUUACAUUCAUUAGAGGAAAAGUCUCUAUCAGAUUAUUCUAUGAGGGGCUUGAAAGGGGGAGCCACAUGCACUUGUGGUUGCCACUACGCAAAUGGUGGUGGUUCUUCGUCCGGAUGGAAUGAUGCAACAAACUAUUGUGAUGGCAAGGAAUCAUAUGGUGGAGGUUCUGAGUCUUGUGGCUGUUGUUCUUCCGAAGGCGUAAAACUCAGUGAUUUUUGGAAAGGGUGAUUAUAUCGCUCGAAAUAAAGAUGUCAAGACCUAUUUUGUAAGAAGUUUGUUUUGACAUCUUUUGCUUAUAUAAUUACUUUUAUUC ...........((((((((((((((((...((((((((((.(((......((((((((.((.((((((((((((((.(((((((((.....))))))........))))))....((..((((((....))))))...))...)))))).)))))....))..))).....((((((((((..((((....))))....))))))))))..))))).....))).))))))))))........((((.(((.((((((((((....(((....(((.......((((((...((((...((((((((....).)))))))))))...)))))).......)))...)))....))))))))))......(((((((.(((...((((((..(((((((..((((((........((((((.......((..(((((((((.....)))))).)))..))......))))))..............((((((((...(((....)))...))))))))...)))))).((((..(((....((((...))))...)))..)))))))))))..)).)))).)))..))))))).....(((((.(((((........))))))))))))).))))...))))).)))))))))))..((((((((((..........)).))))))))((((((((((((((.((.......((((((((((((((..(((((....)))))..)))))))))))))).))..)))))))))))))).... (-209.26) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAAUAAAAGUAAUUAUAUAAGCAAAAGAUGUCAAAACAAACUUCUUACAAAAUAGGUCUUGACAUCUUUAUUUCGAGCGAUAUAAUCACCCUUUCCAAAAAUCACUGAGUUUUACGCCUUCGGAAGAACAACAGCCACAAGACUCAGAACCUCCACCAUAUGAUUCCUUGCCAUCACAAUAGUUUGUUGCAUCAUUCCAUCCGGACGAAGAACCACCACCAUUUGCGUAGUGGCAACCACAAGUGCAUGUGGCUCCCCCUUUCAAGCCCCUCAUAGAAUAAUCUGAUAGAGACUUUUCCUCUAAUGAAUGUAAACUUAUUUUACCCAAUACUUUCAUGAUAAAAGUUUAUUUAUAUUAUUGCCUACUAUAUUUCAGGGGGGGGGCGGCUUCUCCCCAUUUAUAUAUGAUGCUUUGUCAUGAUCAGUCAUUCAGAUUAGCCUUUUGUCUUUGAUUUCAGAUAAACUUGUCUUCUGCAAAUUCUUAACCUUGUAUCAAAUUGGAGUAGCAUACUCUUUCAAACCGAUCAUCAAACGCUCAAAUAUCUUAUACCAUUUCUCAUAUCUAACGAAUAAUACAUGCACACCGCACAUUUAUACUUCACAUAUAUUUCACACCAAAUCUAUUUUAGAUAAAAAUAUUGGUUCAAAGAUAAUCAUCCUCUCCCUCUUGCUCCAAUUUAUACUCCGCUUUUCUAACGAACGGUAGCAUUUUUCCUAACGAACGGUCGUUUUUCCCCGAUAAACGGUAUAUUUGUCUUUGACUGCCGUUUCAUAGAUUUA ((....(((.((((((((.....(((((((((((.((..................)).))))))))))).....(((.(((...))).................(((((((((..((.(((....))).....))...)))))))))...)))....)))))))).)))....)).............(((((((.......(((.((((........((((.((((..((((...))))...)))).)))).............(((((((....((((((.(((...((((((((......(((((.(((................))).)))))...))))))))..))).)))))).(((..........))).)))))))..)))))))..........)))))))...(((((((.((((((..(((((..(((.((((((.........(((((....)))))..(((..............((((.((((((((((((................((.(.......).))...((((((..((((.......((((((..(((((.....(((.....)))....((((.......))))..............))))))))))).......))))...))))))...............))))))))))))))))...(((.(((....))).))).)))........(((((....))))).......)))))).)))..)))))....)))))).....)))).)))... (-151.63) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 436 600 552 69 26 tfor:TF2225|5end_CTn_excision_protein_2394935..2395165_POSITIVE 411 580 533 153 98 tfor:TF1609|5end_hypothetical_protein_1728340..1728570_POSITIVE 406 584 541 183 137 tfor:TF2226|5end_CTn_excision_protein_2395529..2395759_POSITIVE 384 120 77 124 61 tfor:TF2000|5end_conserved_hypothetical_protein_2153931..2154161_POSITIVE 380 569 522 185 141 tfor:TF3049|5end_conserved_hypothetical_protein_3276517..3276747_POSITIVE 375 666 629 171 129 tfor:TF0332|5end_conserved_hypothetical_protein_359333..359563_POSITIVE 366 584 542 112 77 tfor:TF2047|5end_hypothetical_protein_2210057..2210287_POSITIVE 366 569 521 200 157 tfor:TF0471|5end_conserved_hypothetical_protein_487516..487746_POSITIVE 362 578 538 178 130 tfor:TF2419|5end_conserved_hypothetical_protein;_possible_DNA_uptake-related_protein_2598358..2598588_POSITIVE 362 667 621 85 31 tfor:TF0271|5end_oxidase/dehydrogenase_298262..298492_POSITIVE 360 669 623 181 134 tfor:TF1352|5end_polysaccharide_deacetylase-like_protein_1432006..1432236_POSITIVE 359 557 511 78 27 tfor:TF0828|5end_hypothetical_protein_887090..887320_POSITIVE 353 665 621 204 143 tfor:TF0815|5end_conserved_hypothetical_protein_873199..873429_POSITIVE 350 666 627 218 176 tfor:TF1554|5end_UDP-glucose_dehydrogenase_1659623..1659853_POSITIVE 346 669 623 160 110 tfor:TF0992|5end_hypothetical_protein_1048251..1048481_POSITIVE 346 590 544 196 142 tfor:TF0795|5end_hypothetical_protein_852970..853200_POSITIVE 346 579 531 119 72 tfor:TF0265|5end_conserved_hypothetical_protein,_Rhs_family_293279..293509_POSITIVE 344 580 534 185 135 tfor:TF1860|5end_aspartate_carbamoyltransferase,_catalytic_subunit_2016191..2016421_POSITIVE 342 589 541 68 15 tfor:TF2309|5end_cysteinyl-tRNA_synthetase_2468892..2469122_POSITIVE 341 667 622 88 33 tfor:TF0519|5end_thiamine_monophosphate_kinase_543700..543930_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 375 666 629 127 85 tfor:TF0331|3end_hypothetical_protein_359369..359519_POSITIVE 366 584 542 127 92 tfor:TF2046|3end_polyribonucleotide_nucleotidyltransferase_2210152..2210302_POSITIVE 366 569 521 122 79 tfor:TF0470|3end_hypothetical_protein_487518..487668_POSITIVE 362 578 538 124 76 tfor:TF2418|3end_GTP-binding_protein_2598384..2598534_POSITIVE 360 669 623 145 98 tfor:TF1351|3end_conserved_hypothetical_protein_1432050..1432200_POSITIVE 333 668 623 70 21 tfor:TF1575|3end_DNA-binding_response_regulator_1685895..1686045_POSITIVE 333 592 555 94 49 tfor:TF0134|3end_transposase_element_146044..146194_POSITIVE 329 666 625 54 1 tfor:TF1474|3end_6-phosphogluconolactonase_1568123..1568273_POSITIVE 329 544 505 52 1 tfor:TF1294|3end_conserved_hypothetical_protein_1378331..1378481_POSITIVE 326 584 542 149 105 tfor:TF2310|3end_dehydrogenase,_possible_3-oxoacyl-[acyl-carrier-protein]_reductase_2471283..2471433_POSITIVE 325 135 92 63 8 tfor:TF1999|3end_ArgK_protein_with_ATPase_and_kinase_domains_2153934..2154084_POSITIVE 323 665 623 50 1 tfor:TF0463|3end_precorrin-6Y_C5,15-methyltransferase_480291..480441_POSITIVE 321 590 541 92 44 tfor:TF1049|3end_cobyrinic_acid_a,c-diamide_synthase_1111539..1111689_POSITIVE 321 565 521 127 79 tfor:TF0528|3end_two-component_system_sensor_histidine_kinase_554779..554929_POSITIVE 321 568 521 39 1 tfor:TF0417|3end_hypothetical_protein_434856..435006_POSITIVE 320 99 52 118 60 tfor:TF1944|3end_conserved_hypothetical_protein_2093309..2093459_POSITIVE 320 580 531 112 60 tfor:TF0788|3end_protein-export_membrane_protein_841370..841520_POSITIVE 319 646 603 128 87 tfor:TF2508|3end_ATP-dependent_Clp_protease,_ATP-binding_subunit_clpX_2687621..2687771_POSITIVE 319 680 634 65 5 tfor:TF1670|3end_ATP_synthase,_alpha_subunit_1786133..1786283_POSITIVE 318 556 511 93 43 tfor:TF2909|3end_GTP-binding_protein,_possible_GTP1/OBG_family_3105956..3106106_POSITIVE