Origin IGS: gacactgaaatcaaaatcaatcggatttcaaagatacggtatttttttcgattccgcccgttataatgccggaagaaaaacttgggtaaatctatgaaacggcagtcaagggcaaatataccgtttatcgaaaaaaaacgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaattttatcgtatgaaaaagttgaaaaaattaagtttgaaaaaagaaacgattgtcaagttggaaaattcttctatgtctatcctgaaaggaggatgtacaaattcggtatcatgtggcaatccaggaacagataattttaactgtattacaaaaggggattgtgaccttcatactattggacatgatgatggttctaaatgtattagcaaaactgattggggatggtgctggtgttatggactataacccctatgtgatacatgctatctatagaagatgtgttattgtttgctgatttgtagaaaaagtctcttggcgacgatgtccagatgcggggaatatgatggcagaaagaaaaggaagagtaccgtctctcccagatcagtctgaattccttagacacacatacggaaacaatgcttctctcctcgagtgaaattgtctctaaagttcgggacactacgcccctgtcaattccaagactcttgtttttcctatatttaatagaataagattctttaatatttgttttaactaaattgat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 atcaatttagttaaaacaaatattaaagaatcttattctattaaatataggaaaaacaagagtcttggaattgacaggggcgtagtgtcccgaactttagagacaatttcactcgaggagagaagcattgtttccgtatgtgtgtctaaggaattcagactgatctgggagagacggtactcttccttttctttctgccatcatattccccgcatctggacatcgtcgccaagagactttttctacaaatcagcaaacaataacacatcttctatagatagcatgtatcacataggggttatagtccataacaccagcaccatccccaatcagttttgctaatacatttagaaccatcatcatgtccaatagtatgaaggtcacaatccccttttgtaatacagttaaaattatctgttcctggattgccacatgataccgaatttgtacatcctcctttcaggatagacatagaagaattttccaacttgacaatcgtttcttttttcaaacttaattttttcaactttttcatacgataaaattttaatatgtcgggagcaaagataatcatcctctccctcttgctccaatttatactccgcttttctaacgaacagtagcatttttcctaacgaacggtcgttttttttcgataaacggtatatttgcccttgactgccgtttcatagatttacccaagtttttcttccggcattataacgggcggaatcgaaaaaaataccgtatctttgaaatccgattgattttgatttcagtgtc Mask Tandem Repeat Region ================================================ gacactgaaatcaaaatcaatcggatttcaaagatacggtatttttttcgattccgcccgttataatgccggaagaaaaacttgggtaaatctatgaaacggcagtcaagggcaaatataccgtttatcgaaaaaaaacgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaattttatcgtatgaaaaagttgaaaaaattaagtttgaaaaaagaaacgattgtcaagttggaaaattcttctatgtctatcctgaaaggaggatgtacaaattcggtatcatgtggcaatccaggaacagataattttaactgtattacaaaaggggattgtgaccttcatactattggacatgatgatggttctaaatgtattagcaaaactgattggggatggtgctggtgttatggactataacccctatgtgatacatgctatctatagaagatgtgttattgtttgctgatttgtagaaaaagtctcttggcgacgatgtccagatgcggggaatatgatggcagaaagaaaaggaagagtaccgtctctcccagatcagtctgaattccttagacacacatacggaaacaatgcttctctcctcgagtgaaattgtctctaaagttcgggacactacgcccctgtcaattccaagactcttgtttttcctatatttaatagaataagattctttaatatttgttttaactaaattgat Find is-nt database================================================ Query_seq: TF1071:TF1072|TF1071:TF1072:hypothetical protein:conserved hypothetical protein:->->:1141748..1142530 783 gacactgaaatcaaaatcaatcggatttcaaagatacggtatttttttcgattccgcccgttataatgccggaagaaaaacttgggtaaatctatgaaacggcagtcaagggcaaatataccgtttatcgaaaaaaaacgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaattttatcgtatgaaaaagttgaaaaaattaagtttgaaaaaagaaacgattgtcaagttggaaaattcttctatgtctatcctgaaaggaggatgtacaaattcggtatcatgtggcaatccaggaacagataattttaactgtattacaaaaggggattgtgaccttcatactattggacatgatgatggttctaaatgtattagcaaaactgattggggatggtgctggtgttatggactataacccctatgtgatacatgctatctatagaagatgtgttattgtttgctgatttgtagaaaaagtctcttggcgacgatgtccagatgcggggaatatgatggcagaaagaaaaggaagagtaccgtctctcccagatcagtctgaattccttagacacacatacggaaacaatgcttctctcctcgagtgaaattgtctctaaagttcgggacactacgcccctgtcaattccaagactcttgtttttcctatatttaatagaataagattctttaatatttgttttaactaaattgat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF1071:TF1072|TF1071:TF1072:hypothetical protein:conserved hypothetical protein:->->:1141748..1142530 783 gacactgaaatcaaaatcaatcggatttcaaagatacggtatttttttcgattccgcccgttataatgccggaagaaaaacttgggtaaatctatgaaacggcagtcaagggcaaatataccgtttatcgaaaaaaaacgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaattttatcgtatgaaaaagttgaaaaaattaagtttgaaaaaagaaacgattgtcaagttggaaaattcttctatgtctatcctgaaaggaggatgtacaaattcggtatcatgtggcaatccaggaacagataattttaactgtattacaaaaggggattgtgaccttcatactattggacatgatgatggttctaaatgtattagcaaaactgattggggatggtgctggtgttatggactataacccctatgtgatacatgctatctatagaagatgtgttattgtttgctgatttgtagaaaaagtctcttggcgacgatgtccagatgcggggaatatgatggcagaaagaaaaggaagagtaccgtctctcccagatcagtctgaattccttagacacacatacggaaacaatgcttctctcctcgagtgaaattgtctctaaagttcgggacactacgcccctgtcaattccaagactcttgtttttcctatatttaatagaataagattctttaatatttgttttaactaaattgat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF1071:TF1072|TF1071:TF1072:hypothetical protein:conserved hypothetical protein:->->:1141748..1142530 783 gacactgaaatcaaaatcaatcggatttcaaagatacggtatttttttcgattccgcccgttataatgccggaagaaaaacttgggtaaatctatgaaacggcagtcaagggcaaatataccgtttatcgaaaaaaaacgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaattttatcgtatgaaaaagttgaaaaaattaagtttgaaaaaagaaacgattgtcaagttggaaaattcttctatgtctatcctgaaaggaggatgtacaaattcggtatcatgtggcaatccaggaacagataattttaactgtattacaaaaggggattgtgaccttcatactattggacatgatgatggttctaaatgtattagcaaaactgattggggatggtgctggtgttatggactataacccctatgtgatacatgctatctatagaagatgtgttattgtttgctgatttgtagaaaaagtctcttggcgacgatgtccagatgcggggaatatgatggcagaaagaaaaggaagagtaccgtctctcccagatcagtctgaattccttagacacacatacggaaacaatgcttctctcctcgagtgaaattgtctctaaagttcgggacactacgcccctgtcaattccaagactcttgtttttcctatatttaatagaataagattctttaatatttgttttaactaaattgat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gacactgaaatcaaaatcaatcggatttcaaagatacggtatttttttcgattccgcccgttataatgccggaagaaaaacttgggtaaatctatgaaacggcagtcaagggcaaatataccgtttatcgaaaaaaaacgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaattttatcgtatgaaaaagttgaaaaaattaagtttgaaaaaagaaacgattgtcaagttggaaaattcttctatgtctatcctgaaaggaggatgtacaaattcggtatcatgtggcaatccaggaacagataattttaactgtattacaaaaggggattgtgaccttcatactattggacatgatgatggttctaaatgtattagcaaaactgattggggatggtgctggtgttatggactataacccctatgtgatacatgctatctatagaagatgtgttattgtttgctgatttgtagaaaaagtctcttggcgacgatgtccagatgcggggaatatgatggcagaaagaaaaggaagagtaccgtctctcccagatcagtctgaattccttagacacacatacggaaacaatgcttctctcctcgagtgaaattgtctctaaagttcgggacactacgcccctgtcaattccaagactcttgtttttcctatatttaatagaataagattctttaatatttgttttaactaaattgat Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 5 End: 94 .... M K S K S I G F Q R Y G I F F D S A R Y N A G R K T W V N L ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: + Start: 82 End: 171 ................................................................................. M G K S M K R Q S R A N I P F I E K K R P F V R K N A T V R .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 116 End: 370 ................................................................................................................... M Y R L S K K N D R S L G K M L L F V R K A E Y K L E Q E G E D D Y L C S R H I K I L S Y E K V E K I K F E K R N D C Q ............................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 186 End: 482 ......................................................................................................................................................................................... M N W S K R E R M I I F A P D I L K F Y R M K K L K K L S L K K E T I V K L E N S S M S I L K G G C T N S V S C G N P G ............................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 340 End: 531 ................................................................................................................................................................................................................................................................................................................................................... M R Y H V A I Q E Q I I L T V L Q K G I V T F I L L D M M M V L N V L A K L I G D G A G V M D Y N P Y V I H A I Y R R C ............................................................................................................................................................................................................................................................ Protein_Len: 37 Strand: + Start: 516 End: 626 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M C Y C L L I C R K S L L A T M S R C G E Y D G R K K R K S T V S P R S V ............................................................................................................................................................. Protein_Len: 31 Strand: + Start: 580 End: 672 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M M A E R K G R V P S L P D Q S E F L R H T Y G N N A S L L E ............................................................................................................... Protein_Len: 32 Strand: + Start: 645 End: 740 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M R K Q C F S P R V K L S L K F G T L R P C Q F Q D S C F S Y I ........................................... Protein_Len: 43 Strand: + Start: 620 End: 748 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S L N S L D T H T E T M L L S S S E I V S K V R D T T P L S I P R L L F F L Y L I E ................................... Protein_Len: 36 Strand: - Start: 524 End: 631 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q K S I Q L F L R K A V I D L H P S Y S P L F F L F L V T E G L D T Q M ........................................................................................................................................................ Protein_Len: 60 Strand: - Start: 445 End: 783 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ Y R R E W I L R F E K S V C V S V I S R E E L S I T E L T R S V V G R D I G L S K N K R Y K I S Y S E K I N T K V L N M Protein_Len: 42 Strand: - Start: 351 End: 476 .............................................................................................................................................................................................................................................................................................................................................................. T A I W S C I I K V T N C F P I T V K M S N S M I I T R F T N A F S I P S P A P T M ................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: - Start: 245 End: 385 .................................................................................................................................................................................................................................................... R I F F N F F N L K F F S V I T L N S F E E I D I R F P P H V F E T D H P L G P V S L K L Q M .............................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: - Start: 3 End: 128 .. V S I L I L R I E F I R Y K K R N R G N Y H R F F F K P L D I F R C D L A F I G N M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... gacactgaaatcaaaatcaatcggatttcaaagatacggtatttttttcgattccgcccgttataatgccggaagaaaaacttgggtaaatctatgaaacggcagtcaagggcaaatataccgtttatcgaaaaaaaacgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaattttatcgtatgaaaaagttgaaaaaattaagtttgaaaaaagaaacgattgtcaagttggaaaattcttctatgtctatcctgaaaggaggatgtacaaattcggtatcatgtggcaatccaggaacagataattttaactgtattacaaaaggggattgtgaccttcatactattggacatgatgatggttctaaatgtattagcaaaactgattggggatggtgctggtgttatggactataacccctatgtgatacatgctatctatagaagatgtgttattgtttgctgatttgtagaaaaagtctcttggcgacgatgtccagatgcggggaatatgatggcagaaagaaaaggaagagtaccgtctctcccagatcagtctgaattccttagacacacatacggaaacaatgcttctctcctcgagtgaaattgtctctaaagttcgggacactacgcccctgtcaattccaagactcttgtttttcctatatttaatagaataagattctttaatatttgttttaactaaattgat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gacactgaaatcaaaatcaatcggatttcaaagatacggtatttttttcgattccgcccgttataatgccggaagaaaaacttgggtaaatctatgaaacggcagtcaagggcaaatataccgtttatcgaaaaaaaacgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaattttatcgtatgaaaaagttgaaaaaattaagtttgaaaaaagaaacgattgtcaagttggaaaattcttctatgtctatcctgaaaggaggatgtacaaattcggtatcatgtggcaatccaggaacagataattttaactgtattacaaaaggggattgtgaccttcatactattggacatgatgatggttctaaatgtattagcaaaactgattggggatggtgctggtgttatggactataacccctatgtgatacatgctatctatagaagatgtgttattgtttgctgatttgtagaaaaagtctcttggcgacgatgtccagatgcggggaatatgatggcagaaagaaaaggaagagtaccgtctctcccagatcagtctgaattccttagacacacatacggaaacaatgcttctctcctcgagtgaaattgtctctaaagttcgggacactacgcccctgtcaattccaagactcttgtttttcctatatttaatagaataagattctttaatatttgttttaactaaattgat Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 76 HP_score: -5.7 Tail_Score: -4.99645 Start: 598 End: 617 Full_Region: aattcagactgatct gggagag acggta ctcttcc ttttctttctgccat .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gggagagacggtactcttcc...................................................................................................................................................................... TransTerm Strand: + Conf: 76 HP_score: -5.4 Tail_Score: -4.90217 Start: 717 End: 727 Full_Region: CGCCCCTGTCAATTC CAAG ACT CTTG TTTTTCCTATATTTA ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACTCTTG........................................................ Find igs database================================================ Query_seq: TF1071:TF1072|TF1071:TF1072:hypothetical protein:conserved hypothetical protein:->->:1141748..1142530 783 gacactgaaatcaaaatcaatcggatttcaaagatacggtatttttttcgattccgcccgttataatgccggaagaaaaacttgggtaaatctatgaaacggcagtcaagggcaaatataccgtttatcgaaaaaaaacgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaattttatcgtatgaaaaagttgaaaaaattaagtttgaaaaaagaaacgattgtcaagttggaaaattcttctatgtctatcctgaaaggaggatgtacaaattcggtatcatgtggcaatccaggaacagataattttaactgtattacaaaaggggattgtgaccttcatactattggacatgatgatggttctaaatgtattagcaaaactgattggggatggtgctggtgttatggactataacccctatgtgatacatgctatctatagaagatgtgttattgtttgctgatttgtagaaaaagtctcttggcgacgatgtccagatgcggggaatatgatggcagaaagaaaaggaagagtaccgtctctcccagatcagtctgaattccttagacacacatacggaaacaatgcttctctcctcgagtgaaattgtctctaaagttcgggacactacgcccctgtcaattccaagactcttgtttttcctatatttaatagaataagattctttaatatttgttttaactaaattgat Intra-Species Hit: Count: 6 Min: 1 Max: 783 Len: 783 Subject: tfor_TF1071_TF1072|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1141748,1142530]|783 HSP 1 e-value: 0.0 bit: 987.0 Len: 498 Query Start:286 Query End:783 Subject Strand: POSITIVE Subject Start: 286 Subject End: 783 .............................................................................................................................................................................................................................................................................................cgattgtcaagttggaaaattcttctatgtctatcctgaaaggaggatgtacaaattcggtatcatgtggcaatccaggaacagataattttaactgtattacaaaaggggattgtgaccttcatactattggacatgatgatggttctaaatgtattagcaaaactgattggggatggtgctggtgttatggactataacccctatgtgatacatgctatctatagaagatgtgttattgtttgctgatttgtagaaaaagtctcttggcgacgatgtccagatgcggggaatatgatggcagaaagaaaaggaagagtaccgtctctcccagatcagtctgaattccttagacacacatacggaaacaatgcttctctcctcgagtgaaattgtctctaaagttcgggacactacgcccctgtcaattccaagactcttgtttttcctatatttaatagaataagattctttaatatttgttttaactaaattgat .............................................................................................................................................................................................................................................................................................cgattgtcaagttggaaaattcttctatgtctatcctgaaaggaggatgtacaaattcggtatcatgtggcaatccaggaacagataattttaactgtattacaaaaggggattgtgaccttcatactattggacatgatgatggttctaaatgtattagcaaaactgattggggatggtgctggtgttatggactataacccctatgtgatacatgctatctatagaagatgtgttattgtttgctgatttgtagaaaaagtctcttggcgacgatgtccagatgcggggaatatgatggcagaaagaaaaggaagagtaccgtctctcccagatcagtctgaattccttagacacacatacggaaacaatgcttctctcctcgagtgaaattgtctctaaagttcgggacactacgcccctgtcaattccaagactcttgtttttcctatatttaatagaataagattctttaatatttgttttaactaaattgat HSP 2 e-value: 1.0E-112 bit: 406.0 Len: 250 Query Start:1 Query End:250 Subject Strand: POSITIVE Subject Start: 1 Subject End: 250 gacactgaaatcaaaatcaatcggatttcaaagatacggtannnnnnncgattccgcccgttataatgccggaagaaaaacttgggtaaatctatgaaacggcagtcaagggcaaatataccgtttatcgnnnnnnnncgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaattttatcgtat..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... gacactgaaatcaaaatcaatcggatttcaaagatacggtatttttttcgattccgcccgttataatgccggaagaaaaacttgggtaaatctatgaaacggcagtcaagggcaaatataccgtttatcgaaaaaaaacgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaattttatcgtat..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1117_TF1118|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1189512,1191445]|1934 HSP 1 e-value: 9.0E-52 bit: 206.0 Len: 152 Query Start:93 Query End:244 Subject Strand: POSITIVE Subject Start: 1477 Subject End: 1628 ............................................................................................tatgaaacggcagtcaagggcaaatataccgtttatcgnnnnnnnncgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaatttta........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................tatgaaacagcagtcaagggcaaatataccgtttatcggaaaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagaaagggaggataattatctttgctcccgacatattaaaatttta........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1104_TF1105|hypothetical protein:arylsulfatase regulator; Fe-S oxidoreductase|POSITIVE:POSITIVE|[1172255,1172855]|601 HSP 1 e-value: 9.0E-52 bit: 206.0 Len: 152 Query Start:93 Query End:244 Subject Strand: POSITIVE Subject Start: 129 Subject End: 280 ............................................................................................tatgaaacggcagtcaagggcaaatataccgtttatcgnnnnnnnncgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaatttta........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................tatgaaacggcagttaagggcaaatataccgtttatcggaaaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagaaagggaggataattatctttgctcccgacatattaaaatttta........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1096_TF1097|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1165418,1165707]|290 HSP 1 e-value: 9.0E-52 bit: 206.0 Len: 144 Query Start:105 Query End:248 Subject Strand: POSITIVE Subject Start: 147 Subject End: 290 ........................................................................................................gtcaagggcaaatataccgtttatcgnnnnnnnncgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttgctcccgacatattaaaattttatcgt....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................gtcaagagcaaatataccgtttatcgggaaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattagagcaagagggagaggataattatctttgctcccgacatattaaaattttatcgt....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1076_TF1077|possible glycerol kinase:conserved hypothetical protein|POSITIVE:POSITIVE|[1145742,1146521]|780 HSP 1 e-value: 2.0E-49 bit: 198.0 Len: 136 Query Start:87 Query End:222 Subject Strand: POSITIVE Subject Start: 1 Subject End: 136 ......................................................................................taaatctatgaaacggcagtcaagggcaaatataccgtttatcgnnnnnnnncgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................taaatctatgaaacggcagtcaaagacaaatataccgtttatcggggaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattggagcaagagggagaggatgattatctttg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF1092_TF1093|glycosyltransferase:hypothetical protein|POSITIVE:POSITIVE|[1161506,1162691]|1186 HSP 1 e-value: 7.0E-31 bit: 137.0 Len: 105 Query Start:105 Query End:209 Subject Strand: POSITIVE Subject Start: 1082 Subject End: 1186 ........................................................................................................gtcaagggcaaatataccgtttatcgnnnnnnnncgaccgttcgttaggaaaaatgctactgttcgttagaaaagcggagtataaattggagcaagagggagagg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................................................................gtcaagagcaaatataccgtttatcgggaaaaaacgaccgttcgttaggaaaaatgctaccgttcgttagaaaagcggagtataaattagagcaagagggagagg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GACACUGAAAUCAAAAUCAAUCGGAUUUCAAAGAUACGGUAUUUUUUUCGAUUCCGCCCGUUAUAAUGCCGGAAGAAAAACUUGGGUAAAUCUAUGAAACGGCAGUCAAGGGCAAAUAUACCGUUUAUCGAAAAAAAACGACCGUUCGUUAGGAAAAAUGCUACUGUUCGUUAGAAAAGCGGAGUAUAAAUUGGAGCAAGAGGGAGAGGAUGAUUAUCUUUGCUCCCGACAUAUUAAAAUUUUAUCGUAUGAAAAAGUUGAAAAAAUUAAGUUUGAAAAAAGAAACGAUUGUCAAGUUGGAAAAUUCUUCUAUGUCUAUCCUGAAAGGAGGAUGUACAAAUUCGGUAUCAUGUGGCAAUCCAGGAACAGAUAAUUUUAACUGUAUUACAAAAGGGGAUUGUGACCUUCAUACUAUUGGACAUGAUGAUGGUUCUAAAUGUAUUAGCAAAACUGAUUGGGGAUGGUGCUGGUGUUAUGGACUAUAACCCCUAUGUGAUACAUGCUAUCUAUAGAAGAUGUGUUAUUGUUUGCUGAUUUGUAGAAAAAGUCUCUUGGCGACGAUGUCCAGAUGCGGGGAAUAUGAUGGCAGAAAGAAAAGGAAGAGUACCGUCUCUCCCAGAUCAGUCUGAAUUCCUUAGACACACAUACGGAAACAAUGCUUCUCUCCUCGAGUGAAAUUGUCUCUAAAGUUCGGGACACUACGCCCCUGUCAAUUCCAAGACUCUUGUUUUUCCUAUAUUUAAUAGAAUAAGAUUCUUUAAUAUUUGUUUUAACUAAAUUGAU .....(((((((...........)))))))..((.(((((.(((((((((((...((((.......(((((..(((...((....))...)))......))))).....)))).............)))))))))))...)))))))..(((((((((((((....(((....))).))).((((.....((((((...((((((((((..((((.(((((.((.(((.((((((...........(((((((............((..((((((..........(((((....)))))....((((((((...((......)).))))))))...))))))..)).....((.(((((((....((((.((....)).))))....(....).))))))).)).)))))))..((((((((...(((..(((((.....(((((((((.......(((((((((.(.........).)))))..))))...(((((((((.((.((....)))))))))))))..)))))))))...)))))...)))....(....).))))))))........)))))).))).)))))))...((.((((......)))).)).)))).((((((.....))))))........(....)....)))))).))))..(((....((((((........))))))...))).........)))))).))))..)))))))))).......((((((((((((....))).)))))))))........... (-191.19) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUCAAUUUAGUUAAAACAAAUAUUAAAGAAUCUUAUUCUAUUAAAUAUAGGAAAAACAAGAGUCUUGGAAUUGACAGGGGCGUAGUGUCCCGAACUUUAGAGACAAUUUCACUCGAGGAGAGAAGCAUUGUUUCCGUAUGUGUGUCUAAGGAAUUCAGACUGAUCUGGGAGAGACGGUACUCUUCCUUUUCUUUCUGCCAUCAUAUUCCCCGCAUCUGGACAUCGUCGCCAAGAGACUUUUUCUACAAAUCAGCAAACAAUAACACAUCUUCUAUAGAUAGCAUGUAUCACAUAGGGGUUAUAGUCCAUAACACCAGCACCAUCCCCAAUCAGUUUUGCUAAUACAUUUAGAACCAUCAUCAUGUCCAAUAGUAUGAAGGUCACAAUCCCCUUUUGUAAUACAGUUAAAAUUAUCUGUUCCUGGAUUGCCACAUGAUACCGAAUUUGUACAUCCUCCUUUCAGGAUAGACAUAGAAGAAUUUUCCAACUUGACAAUCGUUUCUUUUUUCAAACUUAAUUUUUUCAACUUUUUCAUACGAUAAAAUUUUAAUAUGUCGGGAGCAAAGAUAAUCAUCCUCUCCCUCUUGCUCCAAUUUAUACUCCGCUUUUCUAACGAACAGUAGCAUUUUUCCUAACGAACGGUCGUUUUUUUUCGAUAAACGGUAUAUUUGCCCUUGACUGCCGUUUCAUAGAUUUACCCAAGUUUUUCUUCCGGCAUUAUAACGGGCGGAAUCGAAAAAAAUACCGUAUCUUUGAAAUCCGAUUGAUUUUGAUUUCAGUGUC ..((....(((((((((((((.(((((((..................(((((((((...((((..((((...(((((((((.....)))))........((((.((((......((((((((((((((((((((((.(((((.(.....(((((.((((..((...(((((((......)))))))...))..)))).......))))))))))).))))....(((.......)))..............................((((((((...((((.(((((.(((.(((((.....(.((........((((.................))))...................(((((........))))).)).).....)))))..))).)))))))))......(((((.((((((.......(((.(((.......))))))......))))))))))).))))))))............)))))).))))))))))))......)))).))))............................)))).(((((((.((...............)))))))))..)))).)))).(((.(((....))).)))....)))))))))....(((((...(((((((((((..........((((((((((..(((((......((((((....))))))......)))))...))).)))))))))))))))))).))))).))))))).))....))).))))))))....)).. (-172.91) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 385 740 691 196 132 tfor:TF1045|5end_conserved_hypothetical_protein_1107665..1107895_POSITIVE 379 210 163 129 61 tfor:TF2000|5end_conserved_hypothetical_protein_2153931..2154161_POSITIVE 375 620 571 168 111 tfor:TF0245|5end_bacterioferritin_comigratory_protein_275733..275963_POSITIVE 370 698 654 181 132 tfor:TF0406|5end_monofunctional_biosynthetic_peptidoglycan_transglycosylase_424245..424475_POSITIVE 360 600 554 79 35 tfor:TF0141|5end_exodeoxyribonuclease_VII,_large_subunit_148422..148652_POSITIVE 359 499 451 101 42 tfor:TF2457|5end_ABC_transporter,_permease_component,_zinc-binding_protein_2633147..2633377_POSITIVE 359 590 547 48 9 tfor:TF2267|5end_lysozyme-related_protein_2434869..2435099_POSITIVE 357 576 535 69 29 tfor:TF1294|5end_conserved_hypothetical_protein_1377142..1377372_POSITIVE 355 489 445 181 136 tfor:TF1860|5end_aspartate_carbamoyltransferase,_catalytic_subunit_2016191..2016421_POSITIVE 351 590 541 192 135 tfor:TF0244|5end_DNA_recombination_protein_274683..274913_POSITIVE 349 588 547 216 157 tfor:TF1246|5end_protease,_with_chaperone_function_1329390..1329620_POSITIVE 344 590 547 133 85 tfor:TF1800|5end_conserved_hypothetical_protein_1941214..1941444_POSITIVE 335 709 665 61 11 tfor:TF2932|5end_capsule_biosynthesis_protein_3135514..3135744_POSITIVE 335 590 549 101 59 tfor:TF1661|5end_conserved_hypothetical_protein_1776065..1776295_POSITIVE 333 609 561 144 102 tfor:TF1644|5end_conserved_hypothetical_protein_1752625..1752855_POSITIVE 333 576 531 113 62 tfor:TF1274|5end_hypothetical_protein_1357621..1357851_POSITIVE 333 60 11 166 113 tfor:TF0949|5end_conserved_hypothetical_protein_993863..994093_POSITIVE 330 588 545 171 136 tfor:TF2352|5end_phosphotransacetylase_2516688..2516918_POSITIVE 328 598 551 196 142 tfor:TF2207|5end_exo-alpha-sialidase_(neuraminidase)_2380907..2381137_POSITIVE 327 591 554 160 115 tfor:TF3088|5end_conserved_hypothetical_protein_3322512..3322742_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 375 620 571 131 74 tfor:TF0244|3end_DNA_recombination_protein_275776..275926_POSITIVE 360 600 554 60 16 tfor:TF0140|3end_exodeoxyribonuclease_VII,_small_subunit_148483..148633_POSITIVE 359 499 451 82 23 tfor:TF2456|3end_ABC_transporter,_ATP-binding_protein_2633208..2633358_POSITIVE 359 590 547 48 9 tfor:TF2266|3end_transfer_region-related_protein,_TraQ_2434949..2435099_POSITIVE 357 576 535 103 63 tfor:TF1295|3end_conserved_hypothetical_protein_1377256..1377406_POSITIVE 344 590 547 133 85 tfor:TF1799|3end_quinolinate_synthetase_1941294..1941444_POSITIVE 335 709 665 51 1 tfor:TF2931|3end_3-deoxy-D-manno-2-octulosonic_acid_(Kdo_transferase)_3135584..3135734_POSITIVE 333 60 11 141 88 tfor:TF0948|3end_50S_ribosomal_protein_L34_993918..994068_POSITIVE 329 627 585 42 2 tfor:TF0428|3end_methylmalonyl-CoA_mutase,_beta_subunit_450033..450183_POSITIVE 328 210 164 80 28 tfor:TF1985|3end_surface_antigen_BspA_2136905..2137055_POSITIVE 327 591 554 150 105 tfor:TF3087|3end_conserved_hypothetical_protein_3322582..3322732_POSITIVE 327 576 546 43 9 tfor:TF1683|3end_conserved_hypothetical_protein_1796511..1796661_POSITIVE 314 735 692 119 68 tfor:TF2845|3end_hypothetical_protein_3034757..3034907_POSITIVE 313 618 572 55 6 tfor:TF2270|3end_conserved_hypothetical_protein_2435761..2435911_POSITIVE 305 600 552 117 62 tfor:TF2272|3end_conserved_hypothetical_protein_2436514..2436664_POSITIVE 304 600 555 81 40 tfor:TF1567|3end_V-type_ATP_synthase,_subunit_I_1676421..1676571_POSITIVE 303 578 531 144 83 tfor:TF1775|3end_oxidoreductase,_Gfo/Idh/MocA_family_1914618..1914768_POSITIVE 303 576 547 147 112 tfor:TF0685|3end_hypothetical_protein_731132..731282_POSITIVE 302 220 178 63 8 tfor:TF1999|3end_ArgK_protein_with_ATPase_and_kinase_domains_2153934..2154084_POSITIVE 300 707 662 137 74 tfor:TF2547|3end_hypothetical_protein_2730947..2731097_POSITIVE