Origin IGS:
taaatccctatcttcagatgttttaaatggaactgtttttctccttgtcgtattgccctacaacaccgaagggttagcttactgagatgcggcaaacatcccacgagcagaatgttaccgaagatagagtcgggagacaggaatttgtctctttctgccgatacaaggcaaagtcctgcgaggactagtcgaacgacgaaatgtggagtgtgccctgttttatgtaaatacacctcttgcgacatttttatgctccgcaaggggcatgttcttgcctcattctttacttctgtgcgctcttccaataccaatatatagagttatgactatttcgatcttctatatccccttgttctttagtggtaaagattgtactcctgtaaaattaaaggtataacacgatcttcctaaaagtaagaataaagtaggaaatatcaggtatatgaggattttgtagaataatctagatcttcctcttattctaaatttctgtgcttttacacatgtttttcgagaaatctttcttggaatgatagaaaaacactacttttgtagtcgagaattacgagacggttacacataaaattcgattacaggg
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
ccctgtaatcgaattttatgtgtaaccgtctcgtaattctcgactacaaaagtagtgtttttctatcattccaagaaagatttctcgaaaaacatgtgtaaaagcacagaaatttagaataagaggaagatctagattattctacaaaatcctcatatacctgatatttcctactttattcttacttttaggaagatcgtgttatacctttaattttacaggagtacaatctttaccactaaagaacaaggggatatagaagatcgaaatagtcataactctatatattggtattggaagagcgcacagaagtaaagaatgaggcaagaacatgccccttgcggagcataaaaatgtcgcaagaggtgtatttacataaaacagggcacactccacatttcgtcgttcgactagtcctcgcaggactttgccttgtatcggcagaaagagacaaattcctgtctcccgactctatcttcggtaacattctgctcgtgggatgtttgccgcatctcagtaagctaacccttcggtgttgtagggcaatacgacaaggagaaaaacagttccatttaaaacatctgaagatagggattta

Mask Tandem Repeat Region ================================================
taaatccctatcttcagatgttttaaatggaactgtttttctccttgtcgtattgccctacaacaccgaagggttagcttactgagatgcggcaaacatcccacgagcagaatgttaccgaagatagagtcgggagacaggaatttgtctctttctgccgatacaaggcaaagtcctgcgaggactagtcgaacgacgaaatgtggagtgtgccctgttttatgtaaatacacctcttgcgacatttttatgctccgcaaggggcatgttcttgcctcattctttacttctgtgcgctcttccaataccaatatatagagttatgactatttcgatcttctatatccccttgttctttagtggtaaagattgtactcctgtaaaattaaaggtataacacgatcttcctaaaagtaagaataaagtaggaaatatcaggtatatgaggattttgtagaataatctagatcttcctcttattctaaatttctgtgcttttacacatgtttttcgagaaatctttcttggaatgatagaaaaacactacttttgtagtcgagaattacgagacggttacacataaaattcgattacaggg

Find is-nt database================================================
Query_seq: TF0926:TF0927|TF0926:TF0927:conserved hypothetical protein; possible TraB protein:conserved hypothetical protein; possible ATPase of the AAA superfamily:->->:962998..963595 598
taaatccctatcttcagatgttttaaatggaactgtttttctccttgtcgtattgccctacaacaccgaagggttagcttactgagatgcggcaaacatcccacgagcagaatgttaccgaagatagagtcgggagacaggaatttgtctctttctgccgatacaaggcaaagtcctgcgaggactagtcgaacgacgaaatgtggagtgtgccctgttttatgtaaatacacctcttgcgacatttttatgctccgcaaggggcatgttcttgcctcattctttacttctgtgcgctcttccaataccaatatatagagttatgactatttcgatcttctatatccccttgttctttagtggtaaagattgtactcctgtaaaattaaaggtataacacgatcttcctaaaagtaagaataaagtaggaaatatcaggtatatgaggattttgtagaataatctagatcttcctcttattctaaatttctgtgcttttacacatgtttttcgagaaatctttcttggaatgatagaaaaacactacttttgtagtcgagaattacgagacggttacacataaaattcgattacaggg
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: TF0926:TF0927|TF0926:TF0927:conserved hypothetical protein; possible TraB protein:conserved hypothetical protein; possible ATPase of the AAA superfamily:->->:962998..963595 598
taaatccctatcttcagatgttttaaatggaactgtttttctccttgtcgtattgccctacaacaccgaagggttagcttactgagatgcggcaaacatcccacgagcagaatgttaccgaagatagagtcgggagacaggaatttgtctctttctgccgatacaaggcaaagtcctgcgaggactagtcgaacgacgaaatgtggagtgtgccctgttttatgtaaatacacctcttgcgacatttttatgctccgcaaggggcatgttcttgcctcattctttacttctgtgcgctcttccaataccaatatatagagttatgactatttcgatcttctatatccccttgttctttagtggtaaagattgtactcctgtaaaattaaaggtataacacgatcttcctaaaagtaagaataaagtaggaaatatcaggtatatgaggattttgtagaataatctagatcttcctcttattctaaatttctgtgcttttacacatgtttttcgagaaatctttcttggaatgatagaaaaacactacttttgtagtcgagaattacgagacggttacacataaaattcgattacaggg
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: TF0926:TF0927|TF0926:TF0927:conserved hypothetical protein; possible TraB protein:conserved hypothetical protein; possible ATPase of the AAA superfamily:->->:962998..963595 598
taaatccctatcttcagatgttttaaatggaactgtttttctccttgtcgtattgccctacaacaccgaagggttagcttactgagatgcggcaaacatcccacgagcagaatgttaccgaagatagagtcgggagacaggaatttgtctctttctgccgatacaaggcaaagtcctgcgaggactagtcgaacgacgaaatgtggagtgtgccctgttttatgtaaatacacctcttgcgacatttttatgctccgcaaggggcatgttcttgcctcattctttacttctgtgcgctcttccaataccaatatatagagttatgactatttcgatcttctatatccccttgttctttagtggtaaagattgtactcctgtaaaattaaaggtataacacgatcttcctaaaagtaagaataaagtaggaaatatcaggtatatgaggattttgtagaataatctagatcttcctcttattctaaatttctgtgcttttacacatgtttttcgagaaatctttcttggaatgatagaaaaacactacttttgtagtcgagaattacgagacggttacacataaaattcgattacaggg
Intra-Species Hit: Count: 0

Inter-species Hit: Count: 1	Min: 79	Max: 226	Len: 148
Subject: UniRef90_Q7MUQ4 Cluster: Lysozyme-related protein; n=1; Porphyromonas gingivalis|Rep: Lysozyme-related protein - Porphyromonas gingivalis (Bacteroides gingivalis)
HSP  1	e-value: 2.0E-8	bit: 37.0	Len: 75	Query Start:152	Query End:226	Subject Strand: null	Subject Start: 30	Subject End: 54
....................................................................................................................................................... F  L  P  I  Q  G  K  V  L  R  G  L  V  E  R  R  N  V  E  C  A  L  F  Y  V ....................................................................................................................................................................................................................................................................................................................................................................................
....................................................................................................................................................... F  C  R  Y  K  G  K  V  L  R  G  L  V  K  R  R  K  V  E  F  A  L  F  Y  V ....................................................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 2.0E-8	bit: 35.8	Len: 66	Query Start:79	Query End:144	Subject Strand: null	Subject Start: 1	Subject End: 22
.............................................................................. L  L  R  C  G  K  H  P  T  S  R  M  L  P  K  I  E  S  G  D  R  N ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.............................................................................. M  L  G  Y  G  K  H  P  K  S  R  L  L  R  K  I  E  S  G  D  R  N ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  3	e-value: 2.0E-8	bit: 27.7	Len: 51	Query Start:123	Query End:173	Subject Strand: null	Subject Start: 20	Subject End: 36
.......................................................................................................................... D  R  V  G  R  Q  E  F  V  S  F  C  R  Y  K  A  K .........................................................................................................................................................................................................................................................................................................................................................................................................................................
.......................................................................................................................... D  R  N  F  Y  R  E  F  V  S  F  C  R  Y  K  G  K .........................................................................................................................................................................................................................................................................................................................................................................................................................................


taaatccctatcttcagatgttttaaatggaactgtttttctccttgtcgtattgccctacaacaccgaagggttagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacacctcttgcgacatttttatgctccgcaaggggcatgttcttgcctcattctttacttctgtgcgctcttccaataccaatatatagagttatgactatttcgatcttctatatccccttgttctttagtggtaaagattgtactcctgtaaaattaaaggtataacacgatcttcctaaaagtaagaataaagtaggaaatatcaggtatatgaggattttgtagaataatctagatcttcctcttattctaaatttctgtgcttttacacatgtttttcgagaaatctttcttggaatgatagaaaaacactacttttgtagtcgagaattacgagacggttacacataaaattcgattacaggg
Predict ORF larger than 30AA ================================================
Protein_Len: 33	Strand: +	Start: 87	End: 185
...................................................................................... M  R  Q  T  S  H  E  Q  N  V  T  E  D  R  V  G  R  Q  E  F  V  S  F  C  R  Y  K  A  K  S  C  E  D .............................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 4	End: 315
... M  P  I  F  R  C  F  K  W  N  C  F  S  P  C  R  I  A  L  Q  H  R  R  V  S  L  L  R  C  G  K  H  P  T  S  R  M  L  P  K  I  E  S  G  D  R  N  L  S  L  S  A  D  T  R  Q  S  P  A  R ...........................................................................................................................................................................................................................................................................................
Protein_Len: 32	Strand: +	Start: 228	End: 323
................................................................................................................................................................................................................................... M  H  L  L  R  H  F  Y  A  P  Q  G  A  C  S  C  L  I  L  Y  F  C  A  L  F  Q  Y  Q  Y  I  E  L ...................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 143	End: 394
.............................................................................................................................................. M  C  L  F  L  P  I  Q  G  K  V  L  R  G  L  V  E  R  R  N  V  E  C  A  L  F  Y  V  N  T  P  L  A  T  F  L  C  S  A  R  G  M  F  L  P  H  S  L  L  L  C  A  L  P  I  P  I  Y  R  V ............................................................................................................................................................................................................
Protein_Len: 34	Strand: +	Start: 479	End: 580
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M  L  N  F  C  A  F  T  H  V  F  R  E  I  F  L  G  M  I  E  K  H  Y  F  C  S  R  E  L  R  D  G  Y  T ..................
Protein_Len: 60	Strand: -	Start: 343	End: 534
...................................................................................................................................................................................................................................................................................................................................................... K  L  P  L  S  Q  V  G  T  F  N  F  T  Y  C  S  R  G  L  L  L  F  L  T  P  F  I  L  Y  I  L  I  K  Y  F  L  R  S  R  G  R  I  R  F  K  Q  A  K  V  C  T  K  R  S  I  K  R  P  I  M ................................................................
Protein_Len: 30	Strand: -	Start: 77	End: 166
............................................................................ S  V  S  I  R  C  V  D  W  S  C  F  T  V  S  S  L  T  P  L  C  S  N  T  E  K  Q  R  Y  M ................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: -	Start: 3	End: 314
.. S  L  F  K  D  R  E  A  S  V  L  C  L  G  A  L  V  L  R  V  V  F  H  P  T  H  G  T  K  H  L  Y  V  E  Q  S  M  K  I  S  R  L  P  C  T  R  A  E  N  K  V  E  T  R  E  E  L  V  L  M ............................................................................................................................................................................................................................................................................................

taaatccctatcttcagatgttttaaatggaactgtttttctccttgtcgtattgccctacaacaccgaagggttagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacacctcttgcgacatttttatgctccgcaaggggcatgttcttgcctcattctttacttctgtgcgctcttccaataccaatatatagagttatgactatttcgatcttctatatccccttgttctttagtggtaaagattgtactcctgtaaaattaaaggtataacacgatcttcctaaaagtaagaataaagtaggaaatatcaggtatatgaggattttgtagaataatctagatcttcctcttattctaaatttctgtgcttttacacatgtttttcgagaaatctttcttggaatgatagaaaaacactacttttgtagtcgagaattacgagacggttacacataaaattcgattacaggg
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

taaatccctatcttcagatgttttaaatggaactgtttttctccttgtcgtattgccctacaacaccgaagggttagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacacctcttgcgacatttttatgctccgcaaggggcatgttcttgcctcattctttacttctgtgcgctcttccaataccaatatatagagttatgactatttcgatcttctatatccccttgttctttagtggtaaagattgtactcctgtaaaattaaaggtataacacgatcttcctaaaagtaagaataaagtaggaaatatcaggtatatgaggattttgtagaataatctagatcttcctcttattctaaatttctgtgcttttacacatgtttttcgagaaatctttcttggaatgatagaaaaacactacttttgtagtcgagaattacgagacggttacacataaaattcgattacaggg
Predict TransTerm conf > 70================================================
TransTerm Strand: -	Conf: 72	HP_score: -7.7	Tail_Score: -3.83323	Start: 173	End: 185	Full_Region: ttcgtcgttcgacta gtcct cgc aggac tttgccttgtatcgg
............................................................................................................................................................................gtcctcgcaggac.............................................................................................................................................................................................................................................................................................................................................................................................................................
TransTerm Strand: +	Conf: 52	HP_score: -4.8	Tail_Score: -3.07257	Start: 261	End: 278	Full_Region: TTTTATGCTCCGCAA GGGGCA TGTTCT TGCCTC ATTCTTTACTTCTGT
....................................................................................................................................................................................................................................................................GGGGCATGTTCTTGCCTC................................................................................................................................................................................................................................................................................................................................

Find igs database================================================
Query_seq: TF0926:TF0927|TF0926:TF0927:conserved hypothetical protein; possible TraB protein:conserved hypothetical protein; possible ATPase of the AAA superfamily:->->:962998..963595 598
taaatccctatcttcagatgttttaaatggaactgtttttctccttgtcgtattgccctacaacaccgaagggttagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacacctcttgcgacatttttatgctccgcaaggggcatgttcttgcctcattctttacttctgtgcgctcttccaataccaatatatagagttatgactatttcgatcttctatatccccttgttctttagtggtaaagattgtactcctgtaaaattaaaggtataacacgatcttcctaaaagtaagaataaagtaggaaatatcaggtatatgaggattttgtagaataatctagatcttcctcttattctaaatttctgtgcttttacacatgtttttcgagaaatctttcttggaatgatagaaaaacactacttttgtagtcgagaattacgagacggttacacataaaattcgattacaggg
Intra-Species Hit: Count: 1	Min: 1	Max: 598	Len: 598
Subject: tfor_TF0926_TF0927|conserved hypothetical protein; possible TraB protein:conserved hypothetical protein; possible ATPase of the AAA superfamily|POSITIVE:POSITIVE|[962998,963595]|598
HSP  1	e-value: 0.0	bit: 737.0	Len: 372	Query Start:227	Query End:598	Subject Strand: POSITIVE	Subject Start: 227	Subject End: 598
..................................................................................................................................................................................................................................aatacacctcttgcgacatttttatgctccgcaaggggcatgttcttgcctcattctttacttctgtgcgctcttccaataccaatatatagagttatgactatttcgatcttctatatccccttgttctttagtggtaaagattgtactcctgtaaaattaaaggtataacacgatcttcctaaaagtaagaataaagtaggaaatatcaggtatatgaggattttgtagaataatctagatcttcctcttattctaaatttctgtgcttttacacatgtttttcgagaaatctttcttggaatgatagaaaaacactacttttgtagtcgagaattacgagacggttacacataaaattcgattacaggg
..................................................................................................................................................................................................................................aatacacctcttgcgacatttttatgctccgcaaggggcatgttcttgcctcattctttacttctgtgcgctcttccaataccaatatatagagttatgactatttcgatcttctatatccccttgttctttagtggtaaagattgtactcctgtaaaattaaaggtataacacgatcttcctaaaagtaagaataaagtaggaaatatcaggtatatgaggattttgtagaataatctagatcttcctcttattctaaatttctgtgcttttacacatgtttttcgagaaatctttcttggaatgatagaaaaacactacttttgtagtcgagaattacgagacggttacacataaaattcgattacaggg
HSP  2	e-value: 2.0E-36	bit: 155.0	Len: 78	Query Start:1	Query End:78	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 78
taaatccctatcttcagatgttttaaatggaactgtttttctccttgtcgtattgccctacaacaccgaagggttagc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
taaatccctatcttcagatgttttaaatggaactgtttttctccttgtcgtattgccctacaacaccgaagggttagc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................


Inter-species Hit: Count: 1	Min: 1	Max: 276	Len: 276
Subject: pint_PI0399_PI0400|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[364151,364568]|418
HSP  1	e-value: 4.0E-13	bit: 77.8	Len: 47	Query Start:1	Query End:47	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 47
taaatccctatcttcagatgttttaaatggaactgtttttctccttg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
taaatccctatcttcagatgttttaaatggaactgttcttctgcttg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 4.0E-7	bit: 58.0	Len: 49	Query Start:228	Query End:276	Subject Strand: POSITIVE	Subject Start: 255	Subject End: 302
...................................................................................................................................................................................................................................atacacctcttgcgacatttttatgctccgcaaggggcatgttcttgcc..................................................................................................................................................................................................................................................................................................................................
...................................................................................................................................................................................................................................atacacctcttgcgacatttttatgct-cgcaagaggcgttttcttgcc..................................................................................................................................................................................................................................................................................................................................


Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UAAAUCCCUAUCUUCAGAUGUUUUAAAUGGAACUGUUUUUCUCCUUGUCGUAUUGCCCUACAACACCGAAGGGUUAGCUUACUGAGAUGCGGCAAACAUCCCACGAGCAGAAUGUUACCGAAGAUAGAGUCGGGAGACAGGAAUUUGUCUCUUUCUGCCGAUACAAGGCAAAGUCCUGCGAGGACUAGUCGAACGACGAAAUGUGGAGUGUGCCCUGUUUUAUGUAAAUACACCUCUUGCGACAUUUUUAUGCUCCGCAAGGGGCAUGUUCUUGCC
.......((((((((.((((((......(((..........)))..(((((((((((((.(......).)))))...........)))))))).)))))).....(((.....)))...)))))))).(((((.(((.((((.....)).)).))).)))))....((((.(((((.....)))))....((((...(((((((((((.(((...(((((.....))))))))))))....))))))).(((((((....))))))))))).)))) (-80.50)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
GGCAAGAACAUGCCCCUUGCGGAGCAUAAAAAUGUCGCAAGAGGUGUAUUUACAUAAAACAGGGCACACUCCACAUUUCGUCGUUCGACUAGUCCUCGCAGGACUUUGCCUUGUAUCGGCAGAAAGAGACAAAUUCCUGUCUCCCGACUCUAUCUUCGGUAACAUUCUGCUCGUGGGAUGUUUGCCGCAUCUCAGUAAGCUAACCCUUCGGUGUUGUAGGGCAAUACGACAAGGAGAAAAACAGUUCCAUUUAAAACAUCUGAAGAUAGGGAUUUA
.((..(((.(((((.((((((..((((....)))))))))).))))).))).......((((((((.............(((....))).(((((.....))))).))))))))....)).....((((((......))))))....((((((((((((.........(((..((((((((.....))))))))...))).....((((..(((((((......))))))).)))).......................))))))))))))..... (-85.00)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
446	216	171	212	159	tfor:TF0418|5end_possible_methyl-accepting_chemotaxis_protein_434836..435066_POSITIVE
399	216	175	108	69	tfor:TF1168|5end_hypothetical_protein_1248755..1248985_POSITIVE
393	216	171	176	123	tfor:TF0027|5end_conserved_hypothetical_protein_22866..23096_POSITIVE
392	218	172	82	30	tfor:TF1942|5end_conserved_hypothetical_protein_2090129..2090359_POSITIVE
385	204	166	56	15	tfor:TF2657|5end_conserved_hypothetical_protein_2829729..2829959_POSITIVE
375	150	107	57	4	tfor:TF2918|5end_hypothetical_protein_3114084..3114314_POSITIVE
368	74	33	221	177	tfor:TF1485|5end_conserved_hypothetical_protein_1581871..1582101_POSITIVE
361	216	173	60	12	tfor:TF0693|5end_sigma-54_dependent_transcriptional_regulator_736902..737132_POSITIVE
358	109	66	68	26	tfor:TF2021|5end_hypothetical_protein_2177702..2177932_POSITIVE
357	170	123	56	15	tfor:TF2020|5end_muconate_cycloisomerase_2176321..2176551_POSITIVE
347	216	175	98	59	tfor:TF2996|5end_hypothetical_protein_3210802..3211032_POSITIVE
347	180	131	130	61	tfor:TF2143|5end_S-adenosylmethionine:tRNA_ribosyltransferase-isomerase_2319331..2319561_POSITIVE
346	216	171	139	74	tfor:TF2975|5end_endonuclease_IV_3182394..3182624_POSITIVE
344	180	131	52	3	tfor:TF1197|5end_transcriptional_regulator_1280780..1281010_POSITIVE
343	200	154	224	177	tfor:TF1431|5end_conserved_hypothetical_protein;_possible_acyltransferase_1515104..1515334_POSITIVE
341	170	123	224	161	tfor:TF2165|5end_hypothetical_protein_2341654..2341884_POSITIVE
339	199	156	57	12	tfor:TF0038|5end_conserved_hypothetical_protein_39907..40137_POSITIVE
338	110	63	88	41	tfor:TF1198|5end_conserved_hypothetical_protein_1281464..1281694_POSITIVE
336	217	171	69	12	tfor:TF3134|5end_HD_superfamily_hydrolase_3367990..3368220_POSITIVE
336	179	131	57	2	tfor:TF1825|5end_mannose-6-phosphate_isomerase_1973578..1973808_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
427	215	171	151	99	tfor:TF0417|3end_hypothetical_protein_434856..435006_POSITIVE
411	200	155	66	7	tfor:TF2656|3end_valyl-tRNA_synthetase_2829822..2829972_POSITIVE
392	218	172	56	4	tfor:TF1941|3end_3-phosphoshikimate-1-carboxyvinyltransferase_2090183..2090333_POSITIVE
375	150	107	54	1	tfor:TF2917|3end_conserved_hypothetical_protein_3114161..3114311_POSITIVE
374	215	171	151	99	tfor:TF0026|3end_hypothetical_protein_22922..23072_POSITIVE
361	216	173	70	22	tfor:TF0692|3end_conserved_hypothetical_protein_736992..737142_POSITIVE
357	170	123	56	15	tfor:TF2019|3end_dipeptidyl_peptidase_VI_2176401..2176551_POSITIVE
347	216	175	65	26	tfor:TF2994|3end_hypothetical_protein_3210849..3210999_POSITIVE
346	216	171	104	39	tfor:TF2974|3end_conserved_hypothetical_protein;_possible_hydrolase_3182439..3182589_POSITIVE
339	199	156	61	16	tfor:TF0037|3end_sialic_acid-specific_9-O-acetylesterase_39991..40141_POSITIVE
336	184	146	149	109	tfor:TF2166|3end_hypothetical_protein_2342362..2342512_POSITIVE
329	216	175	91	52	tfor:TF1577|3end_hypothetical_protein_1686234..1686384_POSITIVE
327	184	146	149	109	tfor:TF0366|3end_hypothetical_protein_383811..383961_POSITIVE
327	184	146	149	109	tfor:TF0362|3end_hypothetical_protein_380199..380349_POSITIVE
324	163	126	47	10	tfor:TF3027|3end_zinc_metalloprotease_3251619..3251769_POSITIVE
324	178	131	71	18	tfor:TF1160|3end_MutT/nudix_family_protein_1241008..1241158_POSITIVE
321	200	156	150	104	tfor:TF1448|3end_possible_competence_protein_1533050..1533200_POSITIVE
321	188	146	150	107	tfor:TF1273|3end_hypothetical_protein_1357462..1357612_POSITIVE
319	184	146	149	109	tfor:TF2173|3end_hypothetical_protein_2346063..2346213_POSITIVE
319	184	146	149	109	tfor:TF0346|3end_hypothetical_protein_367316..367466_POSITIVE