Origin IGS: acctttttcttattatttgagtttacaaaactatacaagtggaatatcgtttgcaatcgccaatagtggctattttcacagtccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcatgaagggattttgatgtgtcgggacgacctgtcatctgcattaggacgacctgttatttgttttaggtcgacctaatcgttcagttaggtcgacctaaacagtctgtaaggacgacgtaaacggtctgcaaggtcgacctaaacggcctgtaaggtcgacctaacattcatgtaaggacgacctgactttctgccggggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacaagtggaagatttggagacggaaaagatgctcccgaaactctccggaaaagaaaaaaggacagccccatgtgtgaagctatcccttaaaaaaaaagaggttgtcgagaagagattgatcgggcta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagcccgatcaatctcttctcgacaacctctttttttttaagggatagcttcacacatggggctgtccttttttcttttccggagagtttcgggagcatcttttccgtctccaaatcttccacttgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagaccccggcagaaagtcaggtcgtccttacatgaatgttaggtcgaccttacaggccgtttaggtcgaccttgcagaccgtttacgtcgtccttacagactgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaataacaggtcgtcctaatgcagatgacaggtcgtcccgacacatcaaaatcccttcatgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccggactgtgaaaatagccactattggcgattgcaaacgatattccacttgtatagttttgtaaactcaaataataagaaaaaggt Mask Tandem Repeat Region ================================================ acctttttcttattatttgagtttacaaaactatacaagtggaatatcgtttgcaatcgccaatagtggctattttcacagtccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcatgaagggattttgatgtgtcgggacgacctgtcatctgcattaggacgacctgttatttgttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngactttctgccggggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacaagtggaagatttggagacggaaaagatgctcccgaaactctccggaaaagaaaaaaggacagccccatgtgtgaagctatcccttaaaaaaaaagaggttgtcgagaagagattgatcgggcta Find is-nt database================================================ Query_seq: TF0904:TF0906|TF0904:TF0906:conserved hypothetical protein:conserved hypothetical protein:->->:949217..949814 598 acctttttcttattatttgagtttacaaaactatacaagtggaatatcgtttgcaatcgccaatagtggctattttcacagtccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcatgaagggattttgatgtgtcgggacgacctgtcatctgcattaggacgacctgttatttgttttaggtcgacctaatcgttcagttaggtcgacctaaacagtctgtaaggacgacgtaaacggtctgcaaggtcgacctaaacggcctgtaaggtcgacctaacattcatgtaaggacgacctgactttctgccggggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacaagtggaagatttggagacggaaaagatgctcccgaaactctccggaaaagaaaaaaggacagccccatgtgtgaagctatcccttaaaaaaaaagaggttgtcgagaagagattgatcgggcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0904:TF0906|TF0904:TF0906:conserved hypothetical protein:conserved hypothetical protein:->->:949217..949814 598 acctttttcttattatttgagtttacaaaactatacaagtggaatatcgtttgcaatcgccaatagtggctattttcacagtccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcatgaagggattttgatgtgtcgggacgacctgtcatctgcattaggacgacctgttatttgttttaggtcgacctaatcgttcagttaggtcgacctaaacagtctgtaaggacgacgtaaacggtctgcaaggtcgacctaaacggcctgtaaggtcgacctaacattcatgtaaggacgacctgactttctgccggggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacaagtggaagatttggagacggaaaagatgctcccgaaactctccggaaaagaaaaaaggacagccccatgtgtgaagctatcccttaaaaaaaaagaggttgtcgagaagagattgatcgggcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0904:TF0906|TF0904:TF0906:conserved hypothetical protein:conserved hypothetical protein:->->:949217..949814 598 acctttttcttattatttgagtttacaaaactatacaagtggaatatcgtttgcaatcgccaatagtggctattttcacagtccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcatgaagggattttgatgtgtcgggacgacctgtcatctgcattaggacgacctgttatttgttttaggtcgacctaatcgttcagttaggtcgacctaaacagtctgtaaggacgacgtaaacggtctgcaaggtcgacctaaacggcctgtaaggtcgacctaacattcatgtaaggacgacctgactttctgccggggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacaagtggaagatttggagacggaaaagatgctcccgaaactctccggaaaagaaaaaaggacagccccatgtgtgaagctatcccttaaaaaaaaagaggttgtcgagaagagattgatcgggcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 acctttttcttattatttgagtttacaaaactatacaagtggaatatcgtttgcaatcgccaatagtggctattttcacagtccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcatgaagggattttgatgtgtcgggacgacctgtcatctgcattaggacgacctgttatttgttttaggtcgacctaatcgttcagttaggtcgacctaaacagtctgtaaggacgacgtaaacggtctgcaaggtcgacctaaacggcctgtaaggtcgacctaacattcatgtaaggacgacctgactttctgccggggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacaagtggaagatttggagacggaaaagatgctcccgaaactctccggaaaagaaaaaaggacagccccatgtgtgaagctatcccttaaaaaaaaagaggttgtcgagaagagattgatcgggcta Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 17 End: 124 ................ M S L Q N Y T S G I S F A I A N S G Y F H S P E S L F L R V C R F V N Q .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 106 End: 210 ......................................................................................................... M S I R Q S V T H I L K I Q P L I I C L A L A L C R I A T H R M K G F .................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 33 End: 272 ................................ M Q V E Y R L Q S P I V A I F T V R N P Y F L G F V D S S I S N S Y P Q N S T F N N L F G I G S L P D C D P S H E G I L ...................................................................................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: + Start: 390 End: 545 ..................................................................................................................................................................................................................................................................................................................................................................................................... M P G S F C T S S A F N T D C D T L H Y R Q S G I E D N K W K I W R R K R C S R N S P E K K K G Q P H V ..................................................... Protein_Len: 59 Strand: + Start: 382 End: 558 ............................................................................................................................................................................................................................................................................................................................................................................................. M T F C R G L F A H R Q P S I R T V I H C I I G S P G S K T T S G R F G D G K D A P E T L R K R K K D S P M C E A I P ........................................ Protein_Len: 53 Strand: + Start: 440 End: 598 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A L S A V R D R R Q Q V E D L E T E K M L P K L S G K E K R T A P C V K L S L K K K E V V E K R L I G L Protein_Len: 56 Strand: - Start: 424 End: 591 ....................................................................................................................................................................................................................................................................................................................................................................................................................................... Y P S H Y M A N D A T R S R L C C T S S K S V S F I S G F S E P F S F L V A G H T F S D R L F F S T T S F L N M ....... Protein_Len: 46 Strand: - Start: 417 End: 554 ................................................................................................................................................................................................................................................................................................................................................................................................................................ G E I R V T I C Q M I P L G P D F V V L P L N P S P F S A G S V R R F L F F S L G M H S A M ............................................ Protein_Len: 39 Strand: - Start: 140 End: 256 ........................................................................................................................................... F E V K L L R N P M P E R G S Q S G D C S P I K I H R S S R D D A N P R G T M ...................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: - Start: 3 End: 95 .. K K K N N S N V F S Y L H F I T Q L R W Y H S N E C D P I G M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... acctttttcttattatttgagtttacaaaactatacaagtggaatatcgtttgcaatcgccaatagtggctattttcacagtccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcatgaagggattttgatgtgtcgggacgacctgtcatctgcattaggacgacctgttatttgttttaggtcgacctaatcgttcagttaggtcgacctaaacagtctgtaaggacgacgtaaacggtctgcaaggtcgacctaaacggcctgtaaggtcgacctaacattcatgtaaggacgacctgactttctgccggggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacaagtggaagatttggagacggaaaagatgctcccgaaactctccggaaaagaaaaaaggacagccccatgtgtgaagctatcccttaaaaaaaaagaggttgtcgagaagagattgatcgggcta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ acctttttcttattatttgagtttacaaaactatacaagtggaatatcgtttgcaatcgccaatagtggctattttcacagtccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcatgaagggattttgatgtgtcgggacgacctgtcatctgcattaggacgacctgttatttgttttaggtcgacctaatcgttcagttaggtcgacctaaacagtctgtaaggacgacgtaaacggtctgcaaggtcgacctaaacggcctgtaaggtcgacctaacattcatgtaaggacgacctgactttctgccggggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacaagtggaagatttggagacggaaaagatgctcccgaaactctccggaaaagaaaaaaggacagccccatgtgtgaagctatcccttaaaaaaaaagaggttgtcgagaagagattgatcgggcta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 45 HP_score: -2.7 Tail_Score: -3.19192 Start: 238 End: 278 Full_Region: ACGACCTGTCATCTG CATTAGGACGACCTG TTATTTGTTT TAGGTCGACCTAATCG TTCAGTTAGGTCGAC .............................................................................................................................................................................................................................................CATTAGGACGACCTGTTATTTGTTTTAGGTCGACCTAATCG................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 50 HP_score: -5.5 Tail_Score: -2.79188 Start: 240 End: 275 Full_Region: GACCTGTCATCTGCA TTAGGACGACCTG TTATTTGTTT TAGGTCGACCTAA TCGTTCAGTTAGGTC ...............................................................................................................................................................................................................................................TTAGGACGACCTGTTATTTGTTTTAGGTCGACCTAA................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 82 HP_score: -12.5 Tail_Score: -2.87132 Start: 257 End: 301 Full_Region: AGGACGACCTGTTAT TTGTTTTAGGTCGACCTAAT CGTTCA GTTAGGTCGACCTAAACAG TCTGTAAGGACGACG ................................................................................................................................................................................................................................................................TTGTTTTAGGTCGACCTAATCGTTCAGTTAGGTCGACCTAAACAG......................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 91 HP_score: -11.3 Tail_Score: -3.86524 Start: 349 End: 386 Full_Region: CGACCTAAACGGCCT GTAAGGTCGACCTAACA TTCA TGTAAGGACGACCTGAC TTTCTGCCGGGGTCT ............................................................................................................................................................................................................................................................................................................................................................GTAAGGTCGACCTAACATTCATGTAAGGACGACCTGAC.................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -8.3 Tail_Score: -5.79595 Start: 531 End: 556 Full_Region: ctctttttttttaag ggatagcttca caca tggggctgtcc ttttttcttttccgg ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggatagcttcacacatggggctgtcc.......................................... Find igs database================================================ Query_seq: TF0904:TF0906|TF0904:TF0906:conserved hypothetical protein:conserved hypothetical protein:->->:949217..949814 598 acctttttcttattatttgagtttacaaaactatacaagtggaatatcgtttgcaatcgccaatagtggctattttcacagtccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcatgaagggattttgatgtgtcgggacgacctgtcatctgcattaggacgacctgttatttgttttaggtcgacctaatcgttcagttaggtcgacctaaacagtctgtaaggacgacgtaaacggtctgcaaggtcgacctaaacggcctgtaaggtcgacctaacattcatgtaaggacgacctgactttctgccggggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacaagtggaagatttggagacggaaaagatgctcccgaaactctccggaaaagaaaaaaggacagccccatgtgtgaagctatcccttaaaaaaaaagaggttgtcgagaagagattgatcgggcta Intra-Species Hit: Count: 2 Min: 1 Max: 598 Len: 598 Subject: tfor_TF0904_TF0906|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[949217,949814]|598 HSP 1 e-value: 0.0 bit: 1132.0 Len: 598 Query Start:1 Query End:598 Subject Strand: POSITIVE Subject Start: 1 Subject End: 598 acctttttcttattatttgagtttacaaaactatacaagtggaatatcgtttgcaatcgccaatagtggctattttcacagtccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcatgaagggattttgatgtgtcgggacgacctgtcatctgcattaggacgacctgttatttgttttaggtcgacctaatcgttcagttaggtcgacctaaacagtctgtaaggacgacgtaaacggtctgcaaggtcgacctaaacggcctgtaaggtcgacctaacattcatgtaaggacgacctgactttctgccggggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacaagtggaagatttggagacggaaaagatgctcccgaaactctccggaaaagaaaaaaggacagccccatgtgtgaagctatcccttnnnnnnnnngaggttgtcgagaagagattgatcgggcta acctttttcttattatttgagtttacaaaactatacaagtggaatatcgtttgcaatcgccaatagtggctattttcacagtccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcatgaagggattttgatgtgtcgggacgacctgtcatctgcattaggacgacctgttatttgttttaggtcgacctaatcgttcagttaggtcgacctaaacagtctgtaaggacgacgtaaacggtctgcaaggtcgacctaaacggcctgtaaggtcgacctaacattcatgtaaggacgacctgactttctgccggggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacaagtggaagatttggagacggaaaagatgctcccgaaactctccggaaaagaaaaaaggacagccccatgtgtgaagctatcccttaaaaaaaaagaggttgtcgagaagagattgatcgggcta Subject: tfor_TF0862_TF0864|conserved hypothetical protein fragment:O-succinylbenzoate--CoA ligase|POSITIVE:POSITIVE|[914520,914709]|190 HSP 1 e-value: 2.0E-9 bit: 65.9 Len: 41 Query Start:258 Query End:298 Subject Strand: POSITIVE Subject Start: 55 Subject End: 95 .................................................................................................................................................................................................................................................................tgttttaggtcgacctaatcgttcagttaggtcgacctaaa............................................................................................................................................................................................................................................................................................................ .................................................................................................................................................................................................................................................................tgttttaggtcgtcctaatcgttctgttaggtcgacctaaa............................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-7 bit: 58.0 Len: 33 Query Start:329 Query End:361 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 137 ........................................................................................................................................................................................................................................................................................................................................aaggtcgacctaaacggcctgtaaggtcgacct............................................................................................................................................................................................................................................. ........................................................................................................................................................................................................................................................................................................................................aaggtcgacctaaacggccggtaaggtcgacct............................................................................................................................................................................................................................................. Inter-species Hit: Count: 1 Min: 1 Max: 511 Len: 511 Subject: NC_002950_PG1463_PG1465|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1541532,1542121]|590 HSP 1 e-value: 1.0E-124 bit: 446.0 Len: 341 Query Start:1 Query End:341 Subject Strand: NEGATIVE Subject Start: 250 Subject End: 590 acctttttcttattatttgagtttacaaaactatacaagtggaatatcgtttgcaatcgccaatagtggctattttcacagtccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcatgaagggattttgatgtgtcgggacgacctgtcatctgcattaggacgacctgttatttgttttaggtcgacctaatcgttcagttaggtcgacctaaacagtctgtaaggacgacgtaaacggtctgcaaggtcgacctaa................................................................................................................................................................................................................................................................. acctttttcttattatttgagttcgcaaaaatatacaagtagaatatcgtttgcaatcgccaatagtggctattttcacagcccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcacgaagggattttgatgtgtcgggacgacctgttgtttgttttaggtcgacctaatcgttcagttaggtcgacctaaacggtctgtaaggtcgacgtaaacggtctgtaaggacgacctaaacggcccgtaaggtcgacctaa................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-121 bit: 438.0 Len: 269 Query Start:243 Query End:511 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 370 ..................................................................................................................................................................................................................................................ggacgacctgttatttgttttaggtcgacctaatcgttcagttaggtcgacctaaacagtctgtaaggacgacgtaaacggtctgcaaggtcgacctaaacggcctgtaaggtcgacctaacattcatgtaaggacgacctgactttctgccggggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacaagtggaagatttggagacggaaaagatgctcccgaaa....................................................................................... ..................................................................................................................................................................................................................................................ggacgacctgttgtttgttttaggtcgacctaatcgttcagttaggtcgacctaaacggtctgtaaggtcgacgtaaacggtctgtaaggacgacctaaacggcccgtaaggtcgacctaacattcgtgtaaggacgacctgactttctgccgaggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacagatgaaagatttggagacggaaaagatactcccgaaa....................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACCUUUUUCUUAUUAUUUGAGUUUACAAAACUAUACAAGUGGAAUAUCGUUUGCAAUCGCCAAUAGUGGCUAUUUUCACAGUCCGGAAUCCCUAUUUCUUAGGGUUUGUCGAUUCGUCAAUCAGUAACUCAUAUCCUCAAAAUUCAACCUUUAAUAAUCUGUUUGGCAUUGGCUCUCUGCCGGAUUGCGACCCAUCGCAUGAAGGGAUUUUGAUGUGUCGGGACGACCUGUCAUCUGCAUUAGGACGACCUGUUAUUUGUUUUAGGUCGACCUAAUCGUUCAGUUAGGUCGACCUAAACAGUCUGUAAGGACGACGUAAACGGUCUGCAAGGUCGACCUAAACGGCCUGUAAGGUCGACCUAACAUUCAUGUAAGGACGACCUGACUUUCUGCCGGGGUCUUUUUGCACAUCGUCAGCCUUCAAUACGGACUGUGAUACAUUGCAUUAUCGGCAGUCCGGGAUCGAAGACAACAAGUGGAAGAUUUGGAGACGGAAAAGAUGCUCCCGAAA ..(((((((...(((((((((((.....))))...)))))))......((((.(((..((((....))))..(((((((.((((((...(((((.....)))))...((((((..(((((.(((..................................))).)))))))))))......))))))..((((((......((((((.....(((((((.(((((.((((...........(((((.((((((((...((((((((((((((((((((......)))))))))))))))...((((....))))......)))))...)).)))))).))))).((((..((.((((((.(((.(((....))).))).)))))).)).....)))).)))).))))))))))))....))))))....(((((((((((........)))).)))))))))).)))..........)))))))..))).)))))))))))............ (-164.08) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUCGGGAGCAUCUUUUCCGUCUCCAAAUCUUCCACUUGUUGUCUUCGAUCCCGGACUGCCGAUAAUGCAAUGUAUCACAGUCCGUAUUGAAGGCUGACGAUGUGCAAAAAGACCCCGGCAGAAAGUCAGGUCGUCCUUACAUGAAUGUUAGGUCGACCUUACAGGCCGUUUAGGUCGACCUUGCAGACCGUUUACGUCGUCCUUACAGACUGUUUAGGUCGACCUAACUGAACGAUUAGGUCGACCUAAAACAAAUAACAGGUCGUCCUAAUGCAGAUGACAGGUCGUCCCGACACAUCAAAAUCCCUUCAUGCGAUGGGUCGCAAUCCGGCAGAGAGCCAAUGCCAAACAGAUUAUUAAAGGUUGAAUUUUGAGGAUAUGAGUUACUGAUUGACGAAUCGACAAACCCUAAGAAAUAGGGAUUCCGGACUGUGAAAAUAGCCACUAUUGGCGAUUGCAAACGAUAUUCCACUUGUAUAGUUUUGUAAACUCAAAUAAUAAGAAAAAGGU ...((((((.....)))))).......(((((...((((((((.((((....))))..(((((((..((.((...((((((((((...((((((.....(((((((.....((((..(((.....)))..((((((...........(((((((((((((.((((.(.((..(((.((((...((.....))....)))).))).)).).))))..)))))))))))))......((((((.((((((............)))))).))))))...)))))).)))).....).))))))......))))))((((((...((((((((.((((.........))))...((.(((.((((((......)))))).))).)).......))))).))))))).))..(((((.....)))))....))))))))))..)).))...)))))))..(((((((..((((.......))))...)))))))......))))))))...))))) (-155.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 598 360 312 176 134 tfor:TF0864|5end_O-succinylbenzoate--CoA_ligase_914570..914800_POSITIVE 463 200 157 42 2 tfor:TF2893|5end_conserved_hypothetical_protein;_possible_phosphoesterase_3080766..3080996_POSITIVE 459 295 262 167 134 tfor:TF0884|5end_hypothetical_protein_937603..937833_POSITIVE 445 205 165 86 41 tfor:TF2208|5end_conserved_hypothetical_protein_2382349..2382579_POSITIVE 417 220 177 177 115 tfor:TF3108|5end_glutamine-hydrolyzing_carbamoyl-phosphate_synthase,_large_subunit_3338732..3338962_POSITIVE 404 89 41 66 18 tfor:TF2951|5end_O-succinylbenzoic_acid--CoA_ligase_3158496..3158726_POSITIVE 401 206 165 193 135 tfor:TF2478|5end_hypothetical_protein_2655375..2655605_POSITIVE 388 199 159 231 187 tfor:TF1475|5end_glucose-6-phosphate_1-dehydrogenase_1568034..1568264_POSITIVE 388 207 161 63 4 tfor:TF0537|5end_conserved_hypothetical_protein_563145..563375_POSITIVE 383 201 162 227 187 tfor:TF1500|5end_conserved_hypothetical_protein_1599693..1599923_POSITIVE 382 197 157 65 9 tfor:TF0265|5end_conserved_hypothetical_protein,_Rhs_family_293279..293509_POSITIVE 381 198 158 105 58 tfor:TF0600|5end_oxidoreductase/dehydrogenase_630083..630313_POSITIVE 379 457 416 155 113 tfor:TF0931|5end_superfamily_II_DNA/RNA_helicase,_SNF2_family_970031..970261_POSITIVE 377 220 172 174 131 tfor:TF1947|5end_conserved_hypothetical_protein_2095521..2095751_POSITIVE 373 225 181 61 19 tfor:TF2654|5end_arginyl-tRNA_synthetase_2822692..2822922_POSITIVE 371 360 311 67 15 tfor:TF2833|5end_lipid_A_disaccharide_synthase_3023973..3024203_POSITIVE 368 361 324 186 135 tfor:TF2946|5end_conserved_hypothetical_protein;_possible_ATPase_3151750..3151980_POSITIVE 368 220 179 36 2 tfor:TF1237|5end_possible_L-fuculose_kinase_1322041..1322271_POSITIVE 364 203 161 79 37 tfor:TF1841|5end_hypothetical_protein_1991936..1992166_POSITIVE 362 218 173 129 79 tfor:TF1455|5end_conserved_hypothetical_protein_1540688..1540918_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 418 400 354 47 1 tfor:TF0862|3end_conserved_hypothetical_protein_fragment_914459..914609_POSITIVE 417 220 177 101 39 tfor:TF3107|3end_hypothetical_protein_3338736..3338886_POSITIVE 393 360 311 67 11 tfor:TF2846|3end_cobyric_acid_synthase_3036469..3036619_POSITIVE 381 198 158 72 25 tfor:TF0599|3end_hypothetical_protein_630130..630280_POSITIVE 357 220 171 103 47 tfor:TF1066|3end_hypothetical_protein_1136858..1137008_POSITIVE 356 460 411 91 28 tfor:TF0788|3end_protein-export_membrane_protein_841370..841520_POSITIVE 354 206 164 59 23 tfor:TF2428|3end_conserved_hypothetical_protein_2610525..2610675_POSITIVE 354 206 164 49 13 tfor:TF2426|3end_conserved_hypothetical_protein;_possible_TonB_receptor_2605931..2606081_POSITIVE 353 207 168 71 17 tfor:TF2007|3end_uracil_phosphoribosyltransferase_2159327..2159477_POSITIVE 352 208 165 144 91 tfor:TF1274|3end_hypothetical_protein_1357895..1358045_POSITIVE 351 360 321 45 6 tfor:TF1002|3end_replicative_DNA_helicase_1058232..1058382_POSITIVE 350 419 375 58 10 tfor:TF2322|3end_conserved_hypothetical_protein;_possible_lipoprotein_2483785..2483935_POSITIVE 349 230 181 135 72 tfor:TF0982|3end_conserved_hypothetical_protein_1039474..1039624_POSITIVE 347 390 344 62 11 tfor:TF0337|3end_hypothetical_protein_360711..360861_POSITIVE 344 488 443 81 36 tfor:TF0752|3end_nucleotide-binding_protein;_MAF-like_protein_801713..801863_POSITIVE 343 270 221 49 5 tfor:TF1109|3end_lipoprotein_1179997..1180147_POSITIVE 343 510 461 42 1 tfor:TF0200|3end_2-nitropropane_dioxygenase_226082..226232_POSITIVE 342 207 165 79 43 tfor:TF1794|3end_possible_glucose-1-phosphatase_1935816..1935966_POSITIVE 341 369 321 80 11 tfor:TF2275|3end_conserved_hypothetical_protein_2438300..2438450_POSITIVE 337 197 158 44 9 tfor:TF0543|3end_glycine_cleavage_system_p-protein_575180..575330_POSITIVE