Origin IGS: acgtttcttttccgctctattgacacaactgaccgcagagagcagttatataaaaaaggaaatggtgtacaataatttttttttcatttcccagtctttttccaatttatctaattctaattgtgtcgttgtatttgcccacgggaggaatttattccacaagatctggtttcgatttacagagtctaacggttcccattttccattctcgttgcgcctgtagcgagcttctgtacttataaggattctacttcccggaataatcctaactctaattggaatcggaagtcgtagagtatttattttccctccattaaaaaattgctttgaagtcaatactcttaaaagtccgttaggattgcttacatcatcaatataaaattcatttataacccaaagtaataatttttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcatttaatttttacacaccaatctgatacaaatttcttgaaaacttcaaatcta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagatttgaagttttcaagaaatttgtatcagattggtgtgtaaaaattaaatgaatgtccgtatatatgcctaaaattaattatatattgctgatatacagaaatctatttctctctccgacctatacatctaaattattgttgttaaatagtttaatagagtttttaggtgcaaaaacggatattcattaaaaattattactttgggttataaatgaattttatattgatgatgtaagcaatcctaacggacttttaagagtattgacttcaaagcaattttttaatggagggaaaataaatactctacgacttccgattccaattagagttaggattattccgggaagtagaatccttataagtacagaagctcgctacaggcgcaacgagaatggaaaatgggaaccgttagactctgtaaatcgaaaccagatcttgtggaataaattcctcccgtgggcaaatacaacgacacaattagaattagataaattggaaaaagactgggaaatgaaaaaaaaattattgtacaccatttccttttttatataactgctctctgcggtcagttgtgtcaatagagcggaaaagaaacgt Mask Tandem Repeat Region ================================================ acgtttcttttccgctctattgacacaactgaccgcagagagcagttatataaaaaaggaaatggtgtacaataatttttttttcatttcccagtctttttccaatttatctaattctaattgtgtcgttgtatttgcccacgggaggaatttattccacaagatctggtttcgatttacagagtctaacggttcccattttccattctcgttgcgcctgtagcgagcttctgtacttataaggattctacttcccggaataatcctaactctaattggaatcggaagtcgtagagtatttattttccctccattaaaaaattgctttgaagtcaatactcttaaaagtccgttaggattgcttacatcatcaatataaaattcatttataacccaaagtaataatttttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcatttaatttttacacaccaatctgatacaaatttcttgaaaacttcaaatcta Find is-nt database================================================ Query_seq: TF0899:TF0901|TF0899:TF0901:hypothetical protein:conserved hypothetical protein:->->:946220..946820 601 acgtttcttttccgctctattgacacaactgaccgcagagagcagttatataaaaaaggaaatggtgtacaataatttttttttcatttcccagtctttttccaatttatctaattctaattgtgtcgttgtatttgcccacgggaggaatttattccacaagatctggtttcgatttacagagtctaacggttcccattttccattctcgttgcgcctgtagcgagcttctgtacttataaggattctacttcccggaataatcctaactctaattggaatcggaagtcgtagagtatttattttccctccattaaaaaattgctttgaagtcaatactcttaaaagtccgttaggattgcttacatcatcaatataaaattcatttataacccaaagtaataatttttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcatttaatttttacacaccaatctgatacaaatttcttgaaaacttcaaatcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0899:TF0901|TF0899:TF0901:hypothetical protein:conserved hypothetical protein:->->:946220..946820 601 acgtttcttttccgctctattgacacaactgaccgcagagagcagttatataaaaaaggaaatggtgtacaataatttttttttcatttcccagtctttttccaatttatctaattctaattgtgtcgttgtatttgcccacgggaggaatttattccacaagatctggtttcgatttacagagtctaacggttcccattttccattctcgttgcgcctgtagcgagcttctgtacttataaggattctacttcccggaataatcctaactctaattggaatcggaagtcgtagagtatttattttccctccattaaaaaattgctttgaagtcaatactcttaaaagtccgttaggattgcttacatcatcaatataaaattcatttataacccaaagtaataatttttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcatttaatttttacacaccaatctgatacaaatttcttgaaaacttcaaatcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0899:TF0901|TF0899:TF0901:hypothetical protein:conserved hypothetical protein:->->:946220..946820 601 acgtttcttttccgctctattgacacaactgaccgcagagagcagttatataaaaaaggaaatggtgtacaataatttttttttcatttcccagtctttttccaatttatctaattctaattgtgtcgttgtatttgcccacgggaggaatttattccacaagatctggtttcgatttacagagtctaacggttcccattttccattctcgttgcgcctgtagcgagcttctgtacttataaggattctacttcccggaataatcctaactctaattggaatcggaagtcgtagagtatttattttccctccattaaaaaattgctttgaagtcaatactcttaaaagtccgttaggattgcttacatcatcaatataaaattcatttataacccaaagtaataatttttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcatttaatttttacacaccaatctgatacaaatttcttgaaaacttcaaatcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 acgtttcttttccgctctattgacacaactgaccgcagagagcagttatataaaaaaggaaatggtgtacaataatttttttttcatttcccagtctttttccaatttatctaattctaattgtgtcgttgtatttgcccacgggaggaatttattccacaagatctggtttcgatttacagagtctaacggttcccattttccattctcgttgcgcctgtagcgagcttctgtacttataaggattctacttcccggaataatcctaactctaattggaatcggaagtcgtagagtatttattttccctccattaaaaaattgctttgaagtcaatactcttaaaagtccgttaggattgcttacatcatcaatataaaattcatttataacccaaagtaataatttttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcatttaatttttacacaccaatctgatacaaatttcttgaaaacttcaaatcta Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 20 End: 220 ................... M T Q L T A E S S Y I K K E M V Y N N F F F I S Q S F S N L S N S N C V V V F A H G R N L F H K I W F R F T E S N G S H ............................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 56 Strand: + Start: 72 End: 239 ....................................................................... M I F F S F P S L F P I Y L I L I V S L Y L P T G G I Y S T R S G F D L Q S L T V P I F H S R C A C S E L L Y L .......................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 46 Strand: + Start: 239 End: 376 .............................................................................................................................................................................................................................................. M R I L L P G I I L T L I G I G S R R V F I F P P L K N C F E V N T L K S P L G L L T S S I ................................................................................................................................................................................................................................. Protein_Len: 45 Strand: - Start: 412 End: 546 ........................................................................................................................................................................................................................................................................................................................................................................................................................... H I D T K A G L F E I L S N L L L L K S T Y T P S L F L N R Y I L L I Y N I K P M Y V S M ....................................................... Protein_Len: 60 Strand: - Start: 49 End: 390 ................................................ N R R Y R A E T S I L I R S G P I I R V R I P I P L R L T N I K G G N F F Q K S T L V R L L G N P N S V D D I Y F E N M ................................................................................................................................................................................................................... acgtttcttttccgctctattgacacaactgaccgcagagagcagttatataaaaaaggaaatggtgtacaataatttttttttcatttcccagtctttttccaatttatctaattctaattgtgtcgttgtatttgcccacgggaggaatttattccacaagatctggtttcgatttacagagtctaacggttcccattttccattctcgttgcgcctgtagcgagcttctgtacttataaggattctacttcccggaataatcctaactctaattggaatcggaagtcgtagagtatttattttccctccattaaaaaattgctttgaagtcaatactcttaaaagtccgttaggattgcttacatcatcaatataaaattcatttataacccaaagtaataatttttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcatttaatttttacacaccaatctgatacaaatttcttgaaaacttcaaatcta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ acgtttcttttccgctctattgacacaactgaccgcagagagcagttatataaaaaaggaaatggtgtacaataatttttttttcatttcccagtctttttccaatttatctaattctaattgtgtcgttgtatttgcccacgggaggaatttattccacaagatctggtttcgatttacagagtctaacggttcccattttccattctcgttgcgcctgtagcgagcttctgtacttataaggattctacttcccggaataatcctaactctaattggaatcggaagtcgtagagtatttattttccctccattaaaaaattgctttgaagtcaatactcttaaaagtccgttaggattgcttacatcatcaatataaaattcatttataacccaaagtaataatttttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcatttaatttttacacaccaatctgatacaaatttcttgaaaacttcaaatcta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 44 HP_score: -2.4 Tail_Score: -3.24747 Start: 375 End: 391 Full_Region: attattactttgggt tataaa tgaat tttata ttgatgatgtaagca ......................................................................................................................................................................................................................................................................................................................................................................................tataaatgaattttata.................................................................................................................................................................................................................. Find igs database================================================ Query_seq: TF0899:TF0901|TF0899:TF0901:hypothetical protein:conserved hypothetical protein:->->:946220..946820 601 acgtttcttttccgctctattgacacaactgaccgcagagagcagttatataaaaaaggaaatggtgtacaataatttttttttcatttcccagtctttttccaatttatctaattctaattgtgtcgttgtatttgcccacgggaggaatttattccacaagatctggtttcgatttacagagtctaacggttcccattttccattctcgttgcgcctgtagcgagcttctgtacttataaggattctacttcccggaataatcctaactctaattggaatcggaagtcgtagagtatttattttccctccattaaaaaattgctttgaagtcaatactcttaaaagtccgttaggattgcttacatcatcaatataaaattcatttataacccaaagtaataatttttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcatttaatttttacacaccaatctgatacaaatttcttgaaaacttcaaatcta Intra-Species Hit: Count: 7 Min: 1 Max: 601 Len: 601 Subject: tfor_TF0899_TF0901|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[946220,946820]|601 HSP 1 e-value: 0.0 bit: 1138.0 Len: 601 Query Start:1 Query End:601 Subject Strand: POSITIVE Subject Start: 1 Subject End: 601 acgtttcttttccgctctattgacacaactgaccgcagagagcagttatataaaaaaggaaatggtgtacaataannnnnnnnncatttcccagtctttttccaatttatctaattctaattgtgtcgttgtatttgcccacgggaggaatttattccacaagatctggtttcgatttacagagtctaacggttcccattttccattctcgttgcgcctgtagcgagcttctgtacttataaggattctacttcccggaataatcctaactctaattggaatcggaagtcgtagagtatttattttccctccattaaaaaattgctttgaagtcaatactcttaaaagtccgttaggattgcttacatcatcaatataaaattcatttataacccaaagtaataatttttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcatttaatttttacacaccaatctgatacaaatttcttgaaaacttcaaatcta acgtttcttttccgctctattgacacaactgaccgcagagagcagttatataaaaaaggaaatggtgtacaataatttttttttcatttcccagtctttttccaatttatctaattctaattgtgtcgttgtatttgcccacgggaggaatttattccacaagatctggtttcgatttacagagtctaacggttcccattttccattctcgttgcgcctgtagcgagcttctgtacttataaggattctacttcccggaataatcctaactctaattggaatcggaagtcgtagagtatttattttccctccattaaaaaattgctttgaagtcaatactcttaaaagtccgttaggattgcttacatcatcaatataaaattcatttataacccaaagtaataatttttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcatttaatttttacacaccaatctgatacaaatttcttgaaaacttcaaatcta Subject: tfor_TF2175_TF2176|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2348876,2349050]|175 HSP 1 e-value: 4.0E-41 bit: 170.0 Len: 142 Query Start:408 Query End:549 Subject Strand: POSITIVE Subject Start: 34 Subject End: 175 .......................................................................................................................................................................................................................................................................................................................................................................................................................tttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattca.................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................tttaatgaatatccgtgtttgtacctaaaaactccattaaactatttaataacaataatttggatgcatggattggagtaagaaataaatttctgtagattagcaatatataattaattttaggcatatatacggacattca.................................................... Subject: tfor_TF1369_TF1370|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1447647,1447991]|345 HSP 1 e-value: 4.0E-41 bit: 170.0 Len: 142 Query Start:409 Query End:550 Subject Strand: NEGATIVE Subject Start: 186 Subject End: 327 ........................................................................................................................................................................................................................................................................................................................................................................................................................ttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcat................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................ttaatgaatatccgtgtttgtacctaaaaactccattaaactatttaataacaataatttggatgcatggattggagtaagaaataaatttctgtagattagcaatatataattaattttaggcatatatacggacattcat................................................... Subject: tfor_TF2966_TF2967|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3177733,3177904]|172 HSP 1 e-value: 6.0E-40 bit: 167.0 Len: 140 Query Start:411 Query End:550 Subject Strand: POSITIVE Subject Start: 14 Subject End: 153 ..........................................................................................................................................................................................................................................................................................................................................................................................................................aatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcat................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................aatgaatatccgtgtttgtacctaaaaactccattaaactatttaataacaataatttggatgcatggattggagtaagaaataaatttctgtagattagcaatatataattaattttaggcatatatacggacattcat................................................... Subject: tfor_TF1890_TF1891|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2043154,2043528]|375 HSP 1 e-value: 6.0E-40 bit: 167.0 Len: 140 Query Start:411 Query End:550 Subject Strand: POSITIVE Subject Start: 5 Subject End: 144 ..........................................................................................................................................................................................................................................................................................................................................................................................................................aatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcat................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................aatgaatatccgtgtttgtacctaaaaactccattaaactatttaataacaataatttggatgcatggattggagtaagaaataaatttctgtagattagcaatatataattaattttaggcatatatacggacattcat................................................... Subject: tfor_TF2478_TF2479|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2655674,2656131]|458 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 142 Query Start:406 Query End:547 Subject Strand: NEGATIVE Subject Start: 296 Subject End: 436 .....................................................................................................................................................................................................................................................................................................................................................................................................................tttttaatgaatatccgtttttgcacctaaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacatt...................................................... .....................................................................................................................................................................................................................................................................................................................................................................................................................ttttaaataaatatccgtgtttgtacctaaaagctccattaaactatttaataacaataatttggatgtatggattggggagggaa-taaatttctgtatatcagcaatatataattaattttaggcatatatacggacatt...................................................... Subject: tfor_TF2162_TF2163|thermolysin precursor:hypothetical protein|POSITIVE:POSITIVE|[2340774,2340941]|168 HSP 1 e-value: 5.0E-31 bit: 137.0 Len: 121 Query Start:433 Query End:553 Subject Strand: NEGATIVE Subject Start: 48 Subject End: 168 ................................................................................................................................................................................................................................................................................................................................................................................................................................................taaaaactctattaaactatttaacaacaataatttagatgtataggtcggagagagaaatagatttctgtatatcagcaatatataattaattttaggcatatatacggacattcattta................................................ ................................................................................................................................................................................................................................................................................................................................................................................................................................................taaaagctccattaaactatttaataacaataatttggatgtatggattgaagcaagagataaatttctgtatatcagtaatatataattaattttaggcatatatacggacattcattta................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACGUUUCUUUUCCGCUCUAUUGACACAACUGACCGCAGAGAGCAGUUAUAUAAAAAAGGAAAUGGUGUACAAUAAUUUUUUUUUCAUUUCCCAGUCUUUUUCCAAUUUAUCUAAUUCUAAUUGUGUCGUUGUAUUUGCCCACGGGAGGAAUUUAUUCCACAAGAUCUGGUUUCGAUUUACAGAGUCUAACGGUUCCCAUUUUCCAUUCUCGUUGCGCCUGUAGCGAGCUUCUGUACUUAUAAGGAUUCUACUUCCCGGAAUAAUCCUAACUCUAAUUGGAAUCGGAAGUCGUAGAGUAUUUAUUUUCCCUCCAUUAAAAAAUUGCUUUGAAGUCAAUACUCUUAAAAGUCCGUUAGGAUUGCUUACAUCAUCAAUAUAAAAUUCAUUUAUAACCCAAAGUAAUAAUUUUUAAUGAAUAUCCGUUUUUGCACCUAAAAACUCUAUUAAACUAUUUAACAACAAUAAUUUAGAUGUAUAGGUCGGAGAGAGAAAUAGAUUUCUGUAUAUCAGCAAUAUAUAAUUAAUUUUAGGCAUAUAUACGGACAUUCAUUUAAUUUUUACACACCAAUCUGAUACAAAUUUCUUGAAAACUUCAAAUCUA ..((((((((((((..((((.(((..(((((..(.....)..)))))..........((((((((..................))))))))..)))...................(((((...(((.(((((..........(((((((...(((((.((....(((((((((((((...(((((......(((((...........((((((((....))))))))...............(((.......))).))))).......))))))))))))))))))....)).)))))....)))))))..((((((((((((((((((.................(((((....)))))..............((((((.....))))))...)))))))))..))))))))).......(((((((....)))))))................))))).)))..)))))...))))..)))).))))))))((((((((((((((..((......(((......))).))..)))))))))..((((...(((((.((((........)).)).)))))...)))).......))))). (-122.59) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGAUUUGAAGUUUUCAAGAAAUUUGUAUCAGAUUGGUGUGUAAAAAUUAAAUGAAUGUCCGUAUAUAUGCCUAAAAUUAAUUAUAUAUUGCUGAUAUACAGAAAUCUAUUUCUCUCUCCGACCUAUACAUCUAAAUUAUUGUUGUUAAAUAGUUUAAUAGAGUUUUUAGGUGCAAAAACGGAUAUUCAUUAAAAAUUAUUACUUUGGGUUAUAAAUGAAUUUUAUAUUGAUGAUGUAAGCAAUCCUAACGGACUUUUAAGAGUAUUGACUUCAAAGCAAUUUUUUAAUGGAGGGAAAAUAAAUACUCUACGACUUCCGAUUCCAAUUAGAGUUAGGAUUAUUCCGGGAAGUAGAAUCCUUAUAAGUACAGAAGCUCGCUACAGGCGCAACGAGAAUGGAAAAUGGGAACCGUUAGACUCUGUAAAUCGAAACCAGAUCUUGUGGAAUAAAUUCCUCCCGUGGGCAAAUACAACGACACAAUUAGAAUUAGAUAAAUUGGAAAAAGACUGGGAAAUGAAAAAAAAAUUAUUGUACACCAUUUCCUUUUUUAUAUAACUGCUCUCUGCGGUCAGUUGUGUCAAUAGAGCGGAAAAGAAACGU ...((((((..(((.((...((((((...))))))....)).)))..)))))).....(((((.(((.((((((..................((((.((((((..((((((.(((....((.(((.......(((((((((.......)))))))))...(((((((...((((......((((.(((((((((((..(((.((((((((((.........((((((((...))))))))...(((....))).............)))).)))))).))))))))))))))....................((((((.((((......))))..(((....))).))))))...))))......)))).))))))).....)))))....))))))))).(((((...)))))....)))))).))))..............((((....)))).....)))))).)))....(((((((((........(((((..(((((.....(((..(((((........))))).....))))))))...)))))...(((((.....))))).)))))))))......))))).......... (-123.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 643 550 501 209 160 tfor:TF2163|5end_hypothetical_protein_2340802..2341032_POSITIVE 555 510 461 231 182 tfor:TF0845|5end_hypothetical_protein_896419..896649_POSITIVE 502 460 411 161 112 tfor:TF1370|5end_conserved_hypothetical_protein_1447852..1448082_POSITIVE 444 520 471 227 179 tfor:TF2479|5end_conserved_hypothetical_protein_2655992..2656222_POSITIVE 384 236 192 61 13 tfor:TF2818|5end_acetylornithine_aminotransferase_3007739..3007969_POSITIVE 362 238 198 42 5 tfor:TF0336|5end_Xaa-Pro_aminopeptidase_360613..360843_POSITIVE 353 227 190 32 2 tfor:TF1739|5end_possible_sulfatase_1866983..1867213_POSITIVE 346 229 182 52 14 tfor:TF0594|5end_conserved_hypothetical_protein;_possible_PAP2_superfamily_protein_626971..627201_POSITIVE 343 47 2 87 40 tfor:TF1818|5end_conserved_hypothetical_protein_1957967..1958197_POSITIVE 342 45 2 55 7 tfor:TF1484|5end_penicillin_binding_protein_1579559..1579789_POSITIVE 337 228 190 46 7 tfor:TF2274|5end_conserved_hypothetical_protein_2436652..2436882_POSITIVE 332 226 181 151 94 tfor:TF2837|5end_conserved_hypothetical_protein_3027939..3028169_POSITIVE 332 227 182 185 131 tfor:TF1808|5end_DNA_processing_protein_subunit_A_1949356..1949586_POSITIVE 332 248 201 99 44 tfor:TF1157|5end_glutamate_synthase,_small_subunit_1238012..1238242_POSITIVE 327 260 214 80 30 tfor:TF1013|5end_glycerol-3-phosphate_dehydrogenase_(NAD(P)(+))_(NAD(P)H-dependent_dihydroxyacetone-phosphate_reductase)_1070011..1070241_POSITIVE 325 228 184 171 121 tfor:TF2295|5end_hypothetical_protein_2448164..2448394_POSITIVE 324 235 191 77 36 tfor:TF2628|5end_conserved_hypothetical_protein_2800724..2800954_POSITIVE 323 170 122 193 140 tfor:TF2742|5end_single-strand_DNA-specific_exonuclease_2923802..2924032_POSITIVE 321 240 191 224 170 tfor:TF0302|5end_FKBP-type_peptidyl-prolyl_cis-trans_isomerase_328641..328871_POSITIVE 320 237 194 50 7 tfor:TF1912|5end_transcriptional_regulator,_TetR_family_2065970..2066200_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 535 553 512 43 2 tfor:TF2162|3end_thermolysin_precursor_2340713..2340863_POSITIVE 370 228 185 151 110 tfor:TF0207|3end_conserved_hypothetical_protein_233505..233655_POSITIVE 362 238 198 60 23 tfor:TF0337|3end_hypothetical_protein_360711..360861_POSITIVE 350 225 184 86 34 tfor:TF1653|3end_hypothetical_protein_1766481..1766631_POSITIVE 350 225 184 86 34 tfor:TF0979|3end_hypothetical_protein_1033118..1033268_POSITIVE 346 229 182 52 14 tfor:TF0593|3end_membrane-associated_phospholipid_phosphatase_627051..627201_POSITIVE 337 224 182 115 76 tfor:TF0008|3end_hypothetical_protein_4336..4486_POSITIVE 332 248 201 99 44 tfor:TF1156|3end_oxidoreductase,_FAD-binding_1238092..1238242_POSITIVE 321 260 216 45 1 tfor:TF1012|3end_lysyl-tRNA_synthetase_(lysine--tRNA_ligase)_1070056..1070206_POSITIVE 319 257 212 101 42 tfor:TF1530|3end_1-deoxyxylulose-5-phosphate_synthase_1636614..1636764_POSITIVE 311 230 183 64 9 tfor:TF2703|3end_conserved_hypothetical_protein_2876317..2876467_POSITIVE 310 228 181 150 95 tfor:TF2342|3end_glutathione_peroxidase_2506639..2506789_POSITIVE 308 229 181 89 33 tfor:TF0877|3end_ISPg2-related_(PGIS2-related)_transposase_931817..931967_POSITIVE 307 244 205 56 15 tfor:TF2215|3end_conserved_hypothetical_protein_2388249..2388399_POSITIVE 304 259 211 101 44 tfor:TF0776|3end_ABC_transporter,_permease_component_826173..826323_POSITIVE 303 235 206 27 1 tfor:TF2627|3end_SAM-dependent_methyltransferase_2800754..2800904_POSITIVE 303 238 192 69 30 tfor:TF1255|3end_conserved_hypothetical_protein_1338151..1338301_POSITIVE 299 45 2 65 8 tfor:TF2266|3end_transfer_region-related_protein,_TraQ_2434949..2435099_POSITIVE 298 259 211 84 25 tfor:TF0826|3end_primosomal_protein_N'_886290..886440_POSITIVE 294 249 208 64 16 tfor:TF1771|3end_prolipoprotein_diacylglyceryl_transferase_1910607..1910757_POSITIVE