Origin IGS: tgacacttcatgttctcttacatatactacagaatatattcaacttaccagataaagtggaagagcgatattgccggactctatgcacttttcatgctttccatcgctcaattattaaatcttaatacagttataattccaatctgctatgcattgggaatcaattttcttccctctaaattgtcgtggatgatagtacatatcggcttcataacctgcaatgcaatctatttttggaagattactaattatgataaattacacaatagatggaagtcagaatctaaatataaaaagaaaagaaatggatatttagtagtgctgtatctgctaatttcatttgttttgggattaaccgtcctccattatttaggcaattgggaagcaaagaatactaagcataatattgagaaagtgaattatccgacaataattcggaatttttgattcagaagaagaatgagttatagagcaagatttgaatcgaagtttaaaaggtgaactcagaataggtgtgtctattgttttattgtacctgcctgttgtcggttggatttatacgggttatatgcttcttgatttaattggtgcgtttgatcgtcctattattcaacccattcgtaaagatccctatattatagaagcagatagtacacgtatagtaaaacctccgaatgattaagaaaaagtcgctaattatagatatgccacaacgaaaacagccggaatttaaacaaggtaaaaagaattgaataagct .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agcttattcaattctttttaccttgtttaaattccggctgttttcgttgtggcatatctataattagcgactttttcttaatcattcggaggttttactatacgtgtactatctgcttctataatatagggatctttacgaatgggttgaataataggacgatcaaacgcaccaattaaatcaagaagcatataacccgtataaatccaaccgacaacaggcaggtacaataaaacaatagacacacctattctgagttcaccttttaaacttcgattcaaatcttgctctataactcattcttcttctgaatcaaaaattccgaattattgtcggataattcactttctcaatattatgcttagtattctttgcttcccaattgcctaaataatggaggacggttaatcccaaaacaaatgaaattagcagatacagcactactaaatatccatttcttttctttttatatttagattctgacttccatctattgtgtaatttatcataattagtaatcttccaaaaatagattgcattgcaggttatgaagccgatatgtactatcatccacgacaatttagagggaagaaaattgattcccaatgcatagcagattggaattataactgtattaagatttaataattgagcgatggaaagcatgaaaagtgcatagagtccggcaatatcgctcttccactttatctggtaagttgaatatattctgtagtatatgtaagagaacatgaagtgtca Mask Tandem Repeat Region ================================================ tgacacttcatgttctcttacatatactacagaatatattcaacttaccagataaagtggaagagcgatattgccggactctatgcacttttcatgctttccatcgctcaattattaaatcttaatacagttataattccaatctgctatgcattgggaatcaattttcttccctctaaattgtcgtggatgatagtacatatcggcttcataacctgcaatgcaatctatttttggaagattactaattatgataaattacacaatagatggaagtcagaatctaaatataaaaagaaaagaaatggatatttagtagtgctgtatctgctaatttcatttgttttgggattaaccgtcctccattatttaggcaattgggaagcaaagaatactaagcataatattgagaaagtgaattatccgacaataattcggaatttttgattcagaagaagaatgagttatagagcaagatttgaatcgaagtttaaaaggtgaactcagaataggtgtgtctattgttttattgtacctgcctgttgtcggttggatttatacgggttatatgcttcttgatttaattggtgcgtttgatcgtcctattattcaacccattcgtaaagatccctatattatagaagcagatagtacacgtatagtaaaacctccgaatgattaagaaaaagtcgctaattatagatatgccacaacgaaaacagccggaatttaaacaaggtaaaaagaattgaataagct Find is-nt database================================================ Query_seq: TF0894:TF0895|TF0894:TF0895:conserved hypothetical protein:hypothetical protein:->->:943836..944594 759 tgacacttcatgttctcttacatatactacagaatatattcaacttaccagataaagtggaagagcgatattgccggactctatgcacttttcatgctttccatcgctcaattattaaatcttaatacagttataattccaatctgctatgcattgggaatcaattttcttccctctaaattgtcgtggatgatagtacatatcggcttcataacctgcaatgcaatctatttttggaagattactaattatgataaattacacaatagatggaagtcagaatctaaatataaaaagaaaagaaatggatatttagtagtgctgtatctgctaatttcatttgttttgggattaaccgtcctccattatttaggcaattgggaagcaaagaatactaagcataatattgagaaagtgaattatccgacaataattcggaatttttgattcagaagaagaatgagttatagagcaagatttgaatcgaagtttaaaaggtgaactcagaataggtgtgtctattgttttattgtacctgcctgttgtcggttggatttatacgggttatatgcttcttgatttaattggtgcgtttgatcgtcctattattcaacccattcgtaaagatccctatattatagaagcagatagtacacgtatagtaaaacctccgaatgattaagaaaaagtcgctaattatagatatgccacaacgaaaacagccggaatttaaacaaggtaaaaagaattgaataagct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0894:TF0895|TF0894:TF0895:conserved hypothetical protein:hypothetical protein:->->:943836..944594 759 tgacacttcatgttctcttacatatactacagaatatattcaacttaccagataaagtggaagagcgatattgccggactctatgcacttttcatgctttccatcgctcaattattaaatcttaatacagttataattccaatctgctatgcattgggaatcaattttcttccctctaaattgtcgtggatgatagtacatatcggcttcataacctgcaatgcaatctatttttggaagattactaattatgataaattacacaatagatggaagtcagaatctaaatataaaaagaaaagaaatggatatttagtagtgctgtatctgctaatttcatttgttttgggattaaccgtcctccattatttaggcaattgggaagcaaagaatactaagcataatattgagaaagtgaattatccgacaataattcggaatttttgattcagaagaagaatgagttatagagcaagatttgaatcgaagtttaaaaggtgaactcagaataggtgtgtctattgttttattgtacctgcctgttgtcggttggatttatacgggttatatgcttcttgatttaattggtgcgtttgatcgtcctattattcaacccattcgtaaagatccctatattatagaagcagatagtacacgtatagtaaaacctccgaatgattaagaaaaagtcgctaattatagatatgccacaacgaaaacagccggaatttaaacaaggtaaaaagaattgaataagct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0894:TF0895|TF0894:TF0895:conserved hypothetical protein:hypothetical protein:->->:943836..944594 759 tgacacttcatgttctcttacatatactacagaatatattcaacttaccagataaagtggaagagcgatattgccggactctatgcacttttcatgctttccatcgctcaattattaaatcttaatacagttataattccaatctgctatgcattgggaatcaattttcttccctctaaattgtcgtggatgatagtacatatcggcttcataacctgcaatgcaatctatttttggaagattactaattatgataaattacacaatagatggaagtcagaatctaaatataaaaagaaaagaaatggatatttagtagtgctgtatctgctaatttcatttgttttgggattaaccgtcctccattatttaggcaattgggaagcaaagaatactaagcataatattgagaaagtgaattatccgacaataattcggaatttttgattcagaagaagaatgagttatagagcaagatttgaatcgaagtttaaaaggtgaactcagaataggtgtgtctattgttttattgtacctgcctgttgtcggttggatttatacgggttatatgcttcttgatttaattggtgcgtttgatcgtcctattattcaacccattcgtaaagatccctatattatagaagcagatagtacacgtatagtaaaacctccgaatgattaagaaaaagtcgctaattatagatatgccacaacgaaaacagccggaatttaaacaaggtaaaaagaattgaataagct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgacacttcatgttctcttacatatactacagaatatattcaacttaccagataaagtggaagagcgatattgccggactctatgcacttttcatgctttccatcgctcaattattaaatcttaatacagttataattccaatctgctatgcattgggaatcaattttcttccctctaaattgtcgtggatgatagtacatatcggcttcataacctgcaatgcaatctatttttggaagattactaattatgataaattacacaatagatggaagtcagaatctaaatataaaaagaaaagaaatggatatttagtagtgctgtatctgctaatttcatttgttttgggattaaccgtcctccattatttaggcaattgggaagcaaagaatactaagcataatattgagaaagtgaattatccgacaataattcggaatttttgattcagaagaagaatgagttatagagcaagatttgaatcgaagtttaaaaggtgaactcagaataggtgtgtctattgttttattgtacctgcctgttgtcggttggatttatacgggttatatgcttcttgatttaattggtgcgtttgatcgtcctattattcaacccattcgtaaagatccctatattatagaagcagatagtacacgtatagtaaaacctccgaatgattaagaaaaagtcgctaattatagatatgccacaacgaaaacagccggaatttaaacaaggtaaaaagaattgaataagct Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 24 End: 122 ....................... M L Q N I F N L P D K V E E R Y C R T L C T F H A F H R S I I K S ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 31 Strand: + Start: 221 End: 313 ............................................................................................................................................................................................................................ M Q S I F G R L L I M I N Y T I D G S Q N L N I K R K E M D I .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 10 End: 444 ......... M F S Y I Y Y R I Y S T Y Q I K W K S D I A G L Y A L F M L S I A Q L L N L N T V I I P I C Y A L G I N F L P S K L S W ........................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 467 End: 679 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M E Q D L N R S L K G E L R I G V S I V L L Y L P V V G W I Y T G Y M L L D L I G A F D R P I I Q P I R K D P Y I I E A ................................................................................ Protein_Len: 57 Strand: - Start: 584 End: 754 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N T R K I T R N N L G N T F I G I N Y F C I T C T Y Y F R R I I L F F D S I I S I G C R F C G S N L C P L F F Q M ..... Protein_Len: 60 Strand: - Start: 373 End: 555 .................................................................................................................................................................................................................................................................................................................................................................................... I P F C L I S L M I N L F H I I R C Y N P I K S E S S S H T I S C S K F R L K F P S S L I P T D I T K N Y R G T T P Q M ............................................................................................................................................................................................................ Protein_Len: 34 Strand: - Start: 287 End: 388 .............................................................................................................................................................................................................................................................................................. I Y F S F F H I N L L A T D A L K M Q K P I L R G G N N L C N P L M ................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 46 Strand: - Start: 118 End: 255 ..................................................................................................................... I K I C N Y N W D A I C Q S D I K K G R F Q R P H Y Y M D A E Y G A I C D I K P L N S I I M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ tgacacttcatgttctcttacatatactacagaatatattcaacttaccagataaagtggaagagcgatattgccggactctatgcacttttcatgctttccatcgctcaattattaaatcttaatacagttataattccaatctgctatgcattgggaatcaattttcttccctctaaattgtcgtggatgatagtacatatcggcttcataacctgcaatgcaatctatttttggaagattactaattatgataaattacacaatagatggaagtcagaatctaaatataaaaagaaaagaaatggatatttagtagtgctgtatctgctaatttcatttgttttgggattaaccgtcctccattatttaggcaattgggaagcaaagaatactaagcataatattgagaaagtgaattatccgacaataattcggaatttttgattcagaagaagaatgagttatagagcaagatttgaatcgaagtttaaaaggtgaactcagaataggtgtgtctattgttttattgtacctgcctgttgtcggttggatttatacgggttatatgcttcttgatttaattggtgcgtttgatcgtcctattattcaacccattcgtaaagatccctatattatagaagcagatagtacacgtatagtaaaacctccgaatgattaagaaaaagtcgctaattatagatatgccacaacgaaaacagccggaatttaaacaaggtaaaaagaattgaataagct Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: -1 End: 28 acTGACACTTCATGTTCTCTTACATATACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgacacttcatgttctcttacatatactacagaatatattcaacttaccagataaagtggaagagcgatattgccggactctatgcacttttcatgctttccatcgctcaattattaaatcttaatacagttataattccaatctgctatgcattgggaatcaattttcttccctctaaattgtcgtggatgatagtacatatcggcttcataacctgcaatgcaatctatttttggaagattactaattatgataaattacacaatagatggaagtcagaatctaaatataaaaagaaaagaaatggatatttagtagtgctgtatctgctaatttcatttgttttgggattaaccgtcctccattatttaggcaattgggaagcaaagaatactaagcataatattgagaaagtgaattatccgacaataattcggaatttttgattcagaagaagaatgagttatagagcaagatttgaatcgaagtttaaaaggtgaactcagaataggtgtgtctattgttttattgtacctgcctgttgtcggttggatttatacgggttatatgcttcttgatttaattggtgcgtttgatcgtcctattattcaacccattcgtaaagatccctatattatagaagcagatagtacacgtatagtaaaacctccgaatgattaagaaaaagtcgctaattatagatatgccacaacgaaaacagccggaatttaaacaaggtaaaaagaattgaataagct Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 51 HP_score: -2.6 Tail_Score: -3.81 Start: 434 End: 454 Full_Region: tataactcattcttc ttctgaat caaaa attccgaa ttattgtcggataat .................................................................................................................................................................................................................................................................................................................................................................................................................................................ttctgaatcaaaaattccgaa................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: TF0894:TF0895|TF0894:TF0895:conserved hypothetical protein:hypothetical protein:->->:943836..944594 759 tgacacttcatgttctcttacatatactacagaatatattcaacttaccagataaagtggaagagcgatattgccggactctatgcacttttcatgctttccatcgctcaattattaaatcttaatacagttataattccaatctgctatgcattgggaatcaattttcttccctctaaattgtcgtggatgatagtacatatcggcttcataacctgcaatgcaatctatttttggaagattactaattatgataaattacacaatagatggaagtcagaatctaaatataaaaagaaaagaaatggatatttagtagtgctgtatctgctaatttcatttgttttgggattaaccgtcctccattatttaggcaattgggaagcaaagaatactaagcataatattgagaaagtgaattatccgacaataattcggaatttttgattcagaagaagaatgagttatagagcaagatttgaatcgaagtttaaaaggtgaactcagaataggtgtgtctattgttttattgtacctgcctgttgtcggttggatttatacgggttatatgcttcttgatttaattggtgcgtttgatcgtcctattattcaacccattcgtaaagatccctatattatagaagcagatagtacacgtatagtaaaacctccgaatgattaagaaaaagtcgctaattatagatatgccacaacgaaaacagccggaatttaaacaaggtaaaaagaattgaataagct Intra-Species Hit: Count: 1 Min: 1 Max: 759 Len: 759 Subject: tfor_TF0894_TF0895|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[943836,944594]|759 HSP 1 e-value: 0.0 bit: 1505.0 Len: 759 Query Start:1 Query End:759 Subject Strand: POSITIVE Subject Start: 1 Subject End: 759 tgacacttcatgttctcttacatatactacagaatatattcaacttaccagataaagtggaagagcgatattgccggactctatgcacttttcatgctttccatcgctcaattattaaatcttaatacagttataattccaatctgctatgcattgggaatcaattttcttccctctaaattgtcgtggatgatagtacatatcggcttcataacctgcaatgcaatctatttttggaagattactaattatgataaattacacaatagatggaagtcagaatctaaatataaaaagaaaagaaatggatatttagtagtgctgtatctgctaatttcatttgttttgggattaaccgtcctccattatttaggcaattgggaagcaaagaatactaagcataatattgagaaagtgaattatccgacaataattcggaatttttgattcagaagaagaatgagttatagagcaagatttgaatcgaagtttaaaaggtgaactcagaataggtgtgtctattgttttattgtacctgcctgttgtcggttggatttatacgggttatatgcttcttgatttaattggtgcgtttgatcgtcctattattcaacccattcgtaaagatccctatattatagaagcagatagtacacgtatagtaaaacctccgaatgattaagaaaaagtcgctaattatagatatgccacaacgaaaacagccggaatttaaacaaggtaaaaagaattgaataagct tgacacttcatgttctcttacatatactacagaatatattcaacttaccagataaagtggaagagcgatattgccggactctatgcacttttcatgctttccatcgctcaattattaaatcttaatacagttataattccaatctgctatgcattgggaatcaattttcttccctctaaattgtcgtggatgatagtacatatcggcttcataacctgcaatgcaatctatttttggaagattactaattatgataaattacacaatagatggaagtcagaatctaaatataaaaagaaaagaaatggatatttagtagtgctgtatctgctaatttcatttgttttgggattaaccgtcctccattatttaggcaattgggaagcaaagaatactaagcataatattgagaaagtgaattatccgacaataattcggaatttttgattcagaagaagaatgagttatagagcaagatttgaatcgaagtttaaaaggtgaactcagaataggtgtgtctattgttttattgtacctgcctgttgtcggttggatttatacgggttatatgcttcttgatttaattggtgcgtttgatcgtcctattattcaacccattcgtaaagatccctatattatagaagcagatagtacacgtatagtaaaacctccgaatgattaagaaaaagtcgctaattatagatatgccacaacgaaaacagccggaatttaaacaaggtaaaaagaattgaataagct Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGACACUUCAUGUUCUCUUACAUAUACUACAGAAUAUAUUCAACUUACCAGAUAAAGUGGAAGAGCGAUAUUGCCGGACUCUAUGCACUUUUCAUGCUUUCCAUCGCUCAAUUAUUAAAUCUUAAUACAGUUAUAAUUCCAAUCUGCUAUGCAUUGGGAAUCAAUUUUCUUCCCUCUAAAUUGUCGUGGAUGAUAGUACAUAUCGGCUUCAUAACCUGCAAUGCAAUCUAUUUUUGGAAGAUUACUAAUUAUGAUAAAUUACACAAUAGAUGGAAGUCAGAAUCUAAAUAUAAAAAGAAAAGAAAUGGAUAUUUAGUAGUGCUGUAUCUGCUAAUUUCAUUUGUUUUGGGAUUAACCGUCCUCCAUUAUUUAGGCAAUUGGGAAGCAAAGAAUACUAAGCAUAAUAUUGAGAAAGUGAAUUAUCCGACAAUAAUUCGGAAUUUUUGAUUCAGAAGAAGAAUGAGUUAUAGAGCAAGAUUUGAAUCGAAGUUUAAAAGGUGAACUCAGAAUAGGUGUGUCUAUUGUUUUAUUGUACCUGCCUGUUGUCGGUUGGAUUUAUACGGGUUAUAUGCUUCUUGAUUUAAUUGGUGCGUUUGAUCGUCCUAUUAUUCAACCCAUUCGUAAAGAUCCCUAUAUUAUAGAAGCAGAUAGUACACGUAUAGUAAAACCUCCGAAUGAUUAAGAAAAAGUCGCUAAUUAUAGAUAUGCCACAACGAAAACAGCCGGAAUUUAAACAAGGUAAAAAGAAUUGAAUAAGCU ......((((.(((((.((((...........(((((.(((.((((........)))).))).....))))).((((.(((((((.(((((((.(((((((((..(((..........(((.((((..(((.....((((((.......(((((((((((.........)))))........((..(((((((((.....)))))..))))..))....))))))........))))))....))).)))).))).............((((((.......................((((.(((((((...(((((((........))))))).))))))).)))).((((.....)))))))))).....)))...)))))))))............................((((((((((((.......))))).....)))))))......))).))))))))))).....((((..((..((((((.....))))))..))...(((((((((((.((((((((((((..((((((.(((.....)))....))))))(((.((((((((((..((((.((.(((......))))).)))).)))......((.....))............))))))).)))......))))))))))))........((((.......)))).......)))))))))))....)))).....))))............))))..)))))))))...... (-154.96) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGCUUAUUCAAUUCUUUUUACCUUGUUUAAAUUCCGGCUGUUUUCGUUGUGGCAUAUCUAUAAUUAGCGACUUUUUCUUAAUCAUUCGGAGGUUUUACUAUACGUGUACUAUCUGCUUCUAUAAUAUAGGGAUCUUUACGAAUGGGUUGAAUAAUAGGACGAUCAAACGCACCAAUUAAAUCAAGAAGCAUAUAACCCGUAUAAAUCCAACCGACAACAGGCAGGUACAAUAAAACAAUAGACACACCUAUUCUGAGUUCACCUUUUAAACUUCGAUUCAAAUCUUGCUCUAUAACUCAUUCUUCUUCUGAAUCAAAAAUUCCGAAUUAUUGUCGGAUAAUUCACUUUCUCAAUAUUAUGCUUAGUAUUCUUUGCUUCCCAAUUGCCUAAAUAAUGGAGGACGGUUAAUCCCAAAACAAAUGAAAUUAGCAGAUACAGCACUACUAAAUAUCCAUUUCUUUUCUUUUUAUAUUUAGAUUCUGACUUCCAUCUAUUGUGUAAUUUAUCAUAAUUAGUAAUCUUCCAAAAAUAGAUUGCAUUGCAGGUUAUGAAGCCGAUAUGUACUAUCAUCCACGACAAUUUAGAGGGAAGAAAAUUGAUUCCCAAUGCAUAGCAGAUUGGAAUUAUAACUGUAUUAAGAUUUAAUAAUUGAGCGAUGGAAAGCAUGAAAAGUGCAUAGAGUCCGGCAAUAUCGCUCUUCCACUUUAUCUGGUAAGUUGAAUAUAUUCUGUAGUAUAUGUAAGAGAACAUGAAGUGUCA ...(((((.((.((((..(((...(((..(((((((((((((...(((((((((((((((((((..((((.................(((((((.........((((..((((((((..((((((((.((((.........((((((((..((((.((.((......))..)).))))...(.....)....))))))))..........(((((((..((((((...........(((((......))))).((((((...............))))))...))))))................(((.((((.....)))).)))...)))))))...........)))).)))))))).......((((((((((((..(((.....)))...)))))..((......))....)))).)))...))))))))..))))..((((((((.................)))))))).....)))))))....((((((........))))))..(((((((.........))))))).))))..)))))).....)))))).........)))))))........(((((.........))))).......))))).))))))))..))).)))..)))).)))))))..((((((((....((((.....)))).....(.....)..))))))))...((((((((((..((......((((((......)))))).))..)))...)))))))... (-150.69) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 383 580 535 95 48 tfor:TF1713|5end_hypothetical_protein_1833442..1833672_POSITIVE 357 109 63 213 156 tfor:TF2561|5end_50S_ribosomal_protein_L16_2738693..2738923_POSITIVE 349 101 66 230 188 tfor:TF2252|5end_transfer_region-related_protein,_TraF_2424621..2424851_POSITIVE 346 109 64 50 7 tfor:TF3072|5end_conserved_hypothetical_protein_3295302..3295532_POSITIVE 341 549 503 54 6 tfor:TF0389|5end_conserved_hypothetical_protein;_possible_integral_membrane_protein_408774..409004_POSITIVE 337 109 71 130 80 tfor:TF2487|5end_transposase_2663010..2663240_POSITIVE 333 110 63 191 142 tfor:TF2276|5end_conserved_hypothetical_protein_2438226..2438456_POSITIVE 329 553 512 216 158 tfor:TF1910|5end_nicotinate-nucleotide--dimethylbenzimidazole_phosphoribosyltransferase_2064001..2064231_POSITIVE 326 208 165 181 136 tfor:TF0352|5end_transposase_element_371223..371453_POSITIVE 325 99 55 56 12 tfor:TF2805|5end_zinc_protease_2995212..2995442_POSITIVE 322 540 496 100 47 tfor:TF2143|5end_S-adenosylmethionine:tRNA_ribosyltransferase-isomerase_2319331..2319561_POSITIVE 319 80 39 136 100 tfor:TF1312|5end_hypothetical_protein_1388465..1388695_POSITIVE 319 80 39 136 100 tfor:TF1311|5end_hypothetical_protein_1388242..1388472_POSITIVE 319 80 39 136 100 tfor:TF1310|5end_hypothetical_protein_1388019..1388249_POSITIVE 318 99 57 181 150 tfor:TF2444|5end_regulatory_protein_RecX_2620957..2621187_POSITIVE 317 363 321 138 97 tfor:TF2291|5end_outer_membrane_protein_2446098..2446328_POSITIVE 315 107 65 224 174 tfor:TF2321|5end_hypothetical_protein_2482347..2482577_POSITIVE 314 107 63 166 116 tfor:TF2820|5end_argininosuccinate_synthetase_3009876..3010106_POSITIVE 314 110 63 215 162 tfor:TF2473|5end_poly(A)_polymerase/tRNA_nucleotidyltransferase_2650470..2650700_POSITIVE 314 570 521 156 104 tfor:TF0509|5end_2-oxoglutarate_oxidoreductase,_gamma_subunit_535579..535809_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 383 580 535 97 50 tfor:TF1712|3end_conserved_hypothetical_protein_1833524..1833674_POSITIVE 346 109 64 50 7 tfor:TF3071|3end_integral_membrane_protein,_possible_MotA/TolQ/ExbB_proton_channel_family_3295382..3295532_POSITIVE 326 208 165 104 59 tfor:TF0351|3end_hypothetical_protein_371226..371376_POSITIVE 325 99 55 65 21 tfor:TF2806|3end_conserved_hypothetical_protein_2995301..2995451_POSITIVE 323 109 63 60 5 tfor:TF1109|3end_lipoprotein_1179997..1180147_POSITIVE 319 80 39 149 113 tfor:TF1312|3end_hypothetical_protein_1388781..1388931_POSITIVE 319 80 39 37 1 tfor:TF1311|3end_hypothetical_protein_1388558..1388708_POSITIVE 319 80 39 37 1 tfor:TF1310|3end_hypothetical_protein_1388335..1388485_POSITIVE 317 363 321 138 97 tfor:TF2290|3end_ABC_transporter,_ATP-binding/permease_component_2446178..2446328_POSITIVE 314 110 63 133 80 tfor:TF2472|3end_GAF_domain-containing_protein_2650468..2650618_POSITIVE 308 110 61 109 54 tfor:TF1802|3end_conserved_hypothetical_protein_1946407..1946557_POSITIVE 306 565 530 43 6 tfor:TF1685|3end_hypothetical_protein_1800492..1800642_POSITIVE 303 554 512 92 36 tfor:TF2230|3end_CTn_excision_protein_2400394..2400544_POSITIVE 299 552 511 140 103 tfor:TF2524|3end_conserved_hypothetical_protein;_possible_endonuclease/exonuclease/phosphatase_family_protein_2704090..2704240_POSITIVE 299 107 63 150 99 tfor:TF1602|3end_L-aspartate_oxidase_1717224..1717374_POSITIVE 298 109 61 59 15 tfor:TF1655|3end_long-chain-fatty-acid-CoA_ligase_1771068..1771218_POSITIVE 297 109 61 59 1 tfor:TF0238|3end_outer_membrane_protein_268957..269107_POSITIVE 294 190 142 136 66 tfor:TF2848|3end_cobalamin_biosynthesis_protein_3037389..3037539_POSITIVE 294 578 535 62 10 tfor:TF2247|3end_transfer_region-related_protein,_TraA_2422625..2422775_POSITIVE 292 540 493 133 64 tfor:TF0508|3end_conserved_hypothetical_protein_535659..535809_POSITIVE