Origin IGS: tgatctgtatgaaaaagaaaagaagagcaatcttattgtatggattcctatttattgttgttttatgcggtgcagttgcgcttgaatgccgtctcagccccatcaagatttacgagatgcccattaacgcctggaaacggtaggtgtggaattggcctgattctacacagaaagaaaaacataaaagttctaatagagtatagagatgaaaagacgaattatacaccacaaattatatataatgaataagagaaaactaatcttttcaattgtggggatattgatagggttttcattctctttttgggacgcattggtgtcttatgcagatacagctccaatagaggagccactaaaaacggtgttaatcaatgttgttggcactcccatatttatattacgaactgtcctatatggcggaatcggtttttttgcaggtattataatctcatacctattgactgttaaacaaaaaacaacatgaagtattatctgcatctgccgaaaagaatctatagacgatagataaaggttgggataatcttgacatggaagcaaataagaaaggcatagaatttggaaggagccttcctaaaaaataatcaagataagaataaaaccttttttaagattatccggcgtactattagttccgattctctcccttgcagtc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gactgcaagggagagaatcggaactaatagtacgccggataatcttaaaaaaggttttattcttatcttgattattttttaggaaggctccttccaaattctatgcctttcttatttgcttccatgtcaagattatcccaacctttatctatcgtctatagattcttttcggcagatgcagataatacttcatgttgttttttgtttaacagtcaataggtatgagattataatacctgcaaaaaaaccgattccgccatataggacagttcgtaatataaatatgggagtgccaacaacattgattaacaccgtttttagtggctcctctattggagctgtatctgcataagacaccaatgcgtcccaaaaagagaatgaaaaccctatcaatatccccacaattgaaaagattagttttctcttattcattatatataatttgtggtgtataattcgtcttttcatctctatactctattagaacttttatgtttttctttctgtgtagaatcaggccaattccacacctaccgtttccaggcgttaatgggcatctcgtaaatcttgatggggctgagacggcattcaagcgcaactgcaccgcataaaacaacaataaataggaatccatacaataagattgctcttcttttctttttcatacagatca Mask Tandem Repeat Region ================================================ tgatctgtatgaaaaagaaaagaagagcaatcttattgtatggattcctatttattgttgttttatgcggtgcagttgcgcttgaatgccgtctcagccccatcaagatttacgagatgcccattaacgcctggaaacggtaggtgtggaattggcctgattctacacagaaagaaaaacataaaagttctaatagagtatagagatgaaaagacgaattatacaccacaaattatatataatgaataagagaaaactaatcttttcaattgtggggatattgatagggttttcattctctttttgggacgcattggtgtcttatgcagatacagctccaatagaggagccactaaaaacggtgttaatcaatgttgttggcactcccatatttatattacgaactgtcctatatggcggaatcggtttttttgcaggtattataatctcatacctattgactgttaaacaaaaaacaacatgaagtattatctgcatctgccgaaaagaatctatagacgatagataaaggttgggataatcttgacatggaagcaaataagaaaggcatagaatttggaaggagccttcctaaaaaataatcaagataagaataaaaccttttttaagattatccggcgtactattagttccgattctctcccttgcagtc Find is-nt database================================================ Query_seq: TF0882:TF0883|TF0882:TF0883:hypothetical protein:hypothetical protein:->->:936602..937274 673 tgatctgtatgaaaaagaaaagaagagcaatcttattgtatggattcctatttattgttgttttatgcggtgcagttgcgcttgaatgccgtctcagccccatcaagatttacgagatgcccattaacgcctggaaacggtaggtgtggaattggcctgattctacacagaaagaaaaacataaaagttctaatagagtatagagatgaaaagacgaattatacaccacaaattatatataatgaataagagaaaactaatcttttcaattgtggggatattgatagggttttcattctctttttgggacgcattggtgtcttatgcagatacagctccaatagaggagccactaaaaacggtgttaatcaatgttgttggcactcccatatttatattacgaactgtcctatatggcggaatcggtttttttgcaggtattataatctcatacctattgactgttaaacaaaaaacaacatgaagtattatctgcatctgccgaaaagaatctatagacgatagataaaggttgggataatcttgacatggaagcaaataagaaaggcatagaatttggaaggagccttcctaaaaaataatcaagataagaataaaaccttttttaagattatccggcgtactattagttccgattctctcccttgcagtc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0882:TF0883|TF0882:TF0883:hypothetical protein:hypothetical protein:->->:936602..937274 673 tgatctgtatgaaaaagaaaagaagagcaatcttattgtatggattcctatttattgttgttttatgcggtgcagttgcgcttgaatgccgtctcagccccatcaagatttacgagatgcccattaacgcctggaaacggtaggtgtggaattggcctgattctacacagaaagaaaaacataaaagttctaatagagtatagagatgaaaagacgaattatacaccacaaattatatataatgaataagagaaaactaatcttttcaattgtggggatattgatagggttttcattctctttttgggacgcattggtgtcttatgcagatacagctccaatagaggagccactaaaaacggtgttaatcaatgttgttggcactcccatatttatattacgaactgtcctatatggcggaatcggtttttttgcaggtattataatctcatacctattgactgttaaacaaaaaacaacatgaagtattatctgcatctgccgaaaagaatctatagacgatagataaaggttgggataatcttgacatggaagcaaataagaaaggcatagaatttggaaggagccttcctaaaaaataatcaagataagaataaaaccttttttaagattatccggcgtactattagttccgattctctcccttgcagtc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0882:TF0883|TF0882:TF0883:hypothetical protein:hypothetical protein:->->:936602..937274 673 tgatctgtatgaaaaagaaaagaagagcaatcttattgtatggattcctatttattgttgttttatgcggtgcagttgcgcttgaatgccgtctcagccccatcaagatttacgagatgcccattaacgcctggaaacggtaggtgtggaattggcctgattctacacagaaagaaaaacataaaagttctaatagagtatagagatgaaaagacgaattatacaccacaaattatatataatgaataagagaaaactaatcttttcaattgtggggatattgatagggttttcattctctttttgggacgcattggtgtcttatgcagatacagctccaatagaggagccactaaaaacggtgttaatcaatgttgttggcactcccatatttatattacgaactgtcctatatggcggaatcggtttttttgcaggtattataatctcatacctattgactgttaaacaaaaaacaacatgaagtattatctgcatctgccgaaaagaatctatagacgatagataaaggttgggataatcttgacatggaagcaaataagaaaggcatagaatttggaaggagccttcctaaaaaataatcaagataagaataaaaccttttttaagattatccggcgtactattagttccgattctctcccttgcagtc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgatctgtatgaaaaagaaaagaagagcaatcttattgtatggattcctatttattgttgttttatgcggtgcagttgcgcttgaatgccgtctcagccccatcaagatttacgagatgcccattaacgcctggaaacggtaggtgtggaattggcctgattctacacagaaagaaaaacataaaagttctaatagagtatagagatgaaaagacgaattatacaccacaaattatatataatgaataagagaaaactaatcttttcaattgtggggatattgatagggttttcattctctttttgggacgcattggtgtcttatgcagatacagctccaatagaggagccactaaaaacggtgttaatcaatgttgttggcactcccatatttatattacgaactgtcctatatggcggaatcggtttttttgcaggtattataatctcatacctattgactgttaaacaaaaaacaacatgaagtattatctgcatctgccgaaaagaatctatagacgatagataaaggttgggataatcttgacatggaagcaaataagaaaggcatagaatttggaaggagccttcctaaaaaataatcaagataagaataaaaccttttttaagattatccggcgtactattagttccgattctctcccttgcagtc Predict ORF larger than 30AA ================================================ Protein_Len: 46 Strand: + Start: 3 End: 140 .. M C M K K K R R A I L L Y G F L F I V V L C G A V A L E C R L S P I K I Y E M P I N A W K R ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 40 End: 246 ....................................... M D S Y L L L F Y A V Q L R L N A V S A P S R F T R C P L T P G N G R C G I G L I L H R K K N I K V L I E Y R D E K T N ........................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 280 End: 465 ....................................................................................................................................................................................................................................................................................... M D R V F I L F L G R I G V L C R Y S S N R G A T K N G V N Q C C W H S H I Y I T N C P I W R N R F F C R Y Y N L I P I ................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 200 End: 481 ....................................................................................................................................................................................................... M E M K R R I I H H K L Y I M N K R K L I F S I V G I L I G F S F S F W D A L V S Y A D T A P I E E P L K T V L I N V V ................................................................................................................................................................................................ Protein_Len: 32 Strand: + Start: 577 End: 672 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M E G A F L K N N Q D K N K T F F K I I R R T I S S D S L P C S . Protein_Len: 38 Strand: - Start: 458 End: 571 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q S N F L F C C S T N D A D A S F F R Y V I S L P Q S L R S M S A F L F P M ...................................................................................................... Protein_Len: 60 Strand: - Start: 325 End: 576 .................................................................................................................................................................................................................................................................................................................................... N R V T R Y P P I P K K A P I I I E Y R N V T L C F V V H L I I Q M Q R F S D I S S L Y L N P Y D Q C P L L Y S L C L M ................................................................................................. Protein_Len: 44 Strand: - Start: 222 End: 353 ............................................................................................................................................................................................................................. V G C I I Y L S Y S F V L R K L Q P S I S L T K M R K K P R M P T K H L Y L E L L P A M ................................................................................................................................................................................................................................................................................................................................ Protein_Len: 31 Strand: - Start: 193 End: 285 ................................................................................................................................................................................................ Y L I S I F L R I I C W L N Y I I F L L F S I K E I T P I N M .................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: - Start: 113 End: 229 ................................................................................................................ S I G M L A Q F R Y T H F Q G S E V C F S F C L L E L L T Y L H F S S N Y V M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 43 Strand: - Start: 66 End: 194 ................................................................. A T C N R K F A T E A G D L N V L H G N V G P F P L H P I P R I R C L F F F M F T R M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: - Start: 2 End: 109 . I Q I F F F L L A I K N Y P N R N I T T K H P A T A S S H R R L G M L M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgatctgtatgaaaaagaaaagaagagcaatcttattgtatggattcctatttattgttgttttatgcggtgcagttgcgcttgaatgccgtctcagccccatcaagatttacgagatgcccattaacgcctggaaacggtaggtgtggaattggcctgattctacacagaaagaaaaacataaaagttctaatagagtatagagatgaaaagacgaattatacaccacaaattatatataatgaataagagaaaactaatcttttcaattgtggggatattgatagggttttcattctctttttgggacgcattggtgtcttatgcagatacagctccaatagaggagccactaaaaacggtgttaatcaatgttgttggcactcccatatttatattacgaactgtcctatatggcggaatcggtttttttgcaggtattataatctcatacctattgactgttaaacaaaaaacaacatgaagtattatctgcatctgccgaaaagaatctatagacgatagataaaggttgggataatcttgacatggaagcaaataagaaaggcatagaatttggaaggagccttcctaaaaaataatcaagataagaataaaaccttttttaagattatccggcgtactattagttccgattctctcccttgcagtc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 85 Start: 440 End: 469 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAACAGTCAATAGGTATGAGATTATAAT............................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 218 End: 247 .........................................................................................................................................................................................................................ATTCATTATATATAATTTGTGGTGTATAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgatctgtatgaaaaagaaaagaagagcaatcttattgtatggattcctatttattgttgttttatgcggtgcagttgcgcttgaatgccgtctcagccccatcaagatttacgagatgcccattaacgcctggaaacggtaggtgtggaattggcctgattctacacagaaagaaaaacataaaagttctaatagagtatagagatgaaaagacgaattatacaccacaaattatatataatgaataagagaaaactaatcttttcaattgtggggatattgatagggttttcattctctttttgggacgcattggtgtcttatgcagatacagctccaatagaggagccactaaaaacggtgttaatcaatgttgttggcactcccatatttatattacgaactgtcctatatggcggaatcggtttttttgcaggtattataatctcatacctattgactgttaaacaaaaaacaacatgaagtattatctgcatctgccgaaaagaatctatagacgatagataaaggttgggataatcttgacatggaagcaaataagaaaggcatagaatttggaaggagccttcctaaaaaataatcaagataagaataaaaccttttttaagattatccggcgtactattagttccgattctctcccttgcagtc Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TF0882:TF0883|TF0882:TF0883:hypothetical protein:hypothetical protein:->->:936602..937274 673 tgatctgtatgaaaaagaaaagaagagcaatcttattgtatggattcctatttattgttgttttatgcggtgcagttgcgcttgaatgccgtctcagccccatcaagatttacgagatgcccattaacgcctggaaacggtaggtgtggaattggcctgattctacacagaaagaaaaacataaaagttctaatagagtatagagatgaaaagacgaattatacaccacaaattatatataatgaataagagaaaactaatcttttcaattgtggggatattgatagggttttcattctctttttgggacgcattggtgtcttatgcagatacagctccaatagaggagccactaaaaacggtgttaatcaatgttgttggcactcccatatttatattacgaactgtcctatatggcggaatcggtttttttgcaggtattataatctcatacctattgactgttaaacaaaaaacaacatgaagtattatctgcatctgccgaaaagaatctatagacgatagataaaggttgggataatcttgacatggaagcaaataagaaaggcatagaatttggaaggagccttcctaaaaaataatcaagataagaataaaaccttttttaagattatccggcgtactattagttccgattctctcccttgcagtc Intra-Species Hit: Count: 1 Min: 1 Max: 673 Len: 673 Subject: tfor_TF0882_TF0883|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[936602,937274]|673 HSP 1 e-value: 0.0 bit: 1292.0 Len: 673 Query Start:1 Query End:673 Subject Strand: POSITIVE Subject Start: 1 Subject End: 673 tgatctgtatgaaaaagaaaagaagagcaatcttattgtatggattcctatttattgttgttttatgcggtgcagttgcgcttgaatgccgtctcagccccatcaagatttacgagatgcccattaacgcctggaaacggtaggtgtggaattggcctgattctacacagaaagaaaaacataaaagttctaatagagtatagagatgaaaagacgaattatacaccacaaattatatataatgaataagagaaaactaatcttttcaattgtggggatattgatagggttttcattctctttttgggacgcattggtgtcttatgcagatacagctccaatagaggagccactaaaaacggtgttaatcaatgttgttggcactcccatatttatattacgaactgtcctatatggcggaatcggnnnnnnngcaggtattataatctcatacctattgactgttaaacaaaaaacaacatgaagtattatctgcatctgccgaaaagaatctatagacgatagataaaggttgggataatcttgacatggaagcaaataagaaaggcatagaatttggaaggagccttcctaaaaaataatcaagataagaataaaaccttttttaagattatccggcgtactattagttccgattctctcccttgcagtc tgatctgtatgaaaaagaaaagaagagcaatcttattgtatggattcctatttattgttgttttatgcggtgcagttgcgcttgaatgccgtctcagccccatcaagatttacgagatgcccattaacgcctggaaacggtaggtgtggaattggcctgattctacacagaaagaaaaacataaaagttctaatagagtatagagatgaaaagacgaattatacaccacaaattatatataatgaataagagaaaactaatcttttcaattgtggggatattgatagggttttcattctctttttgggacgcattggtgtcttatgcagatacagctccaatagaggagccactaaaaacggtgttaatcaatgttgttggcactcccatatttatattacgaactgtcctatatggcggaatcggtttttttgcaggtattataatctcatacctattgactgttaaacaaaaaacaacatgaagtattatctgcatctgccgaaaagaatctatagacgatagataaaggttgggataatcttgacatggaagcaaataagaaaggcatagaatttggaaggagccttcctaaaaaataatcaagataagaataaaaccttttttaagattatccggcgtactattagttccgattctctcccttgcagtc Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUCUGUAUGAAAAAGAAAAGAAGAGCAAUCUUAUUGUAUGGAUUCCUAUUUAUUGUUGUUUUAUGCGGUGCAGUUGCGCUUGAAUGCCGUCUCAGCCCCAUCAAGAUUUACGAGAUGCCCAUUAACGCCUGGAAACGGUAGGUGUGGAAUUGGCCUGAUUCUACACAGAAAGAAAAACAUAAAAGUUCUAAUAGAGUAUAGAGAUGAAAAGACGAAUUAUACACCACAAAUUAUAUAUAAUGAAUAAGAGAAAACUAAUCUUUUCAAUUGUGGGGAUAUUGAUAGGGUUUUCAUUCUCUUUUUGGGACGCAUUGGUGUCUUAUGCAGAUACAGCUCCAAUAGAGGAGCCACUAAAAACGGUGUUAAUCAAUGUUGUUGGCACUCCCAUAUUUAUAUUACGAACUGUCCUAUAUGGCGGAAUCGGUUUUUUUGCAGGUAUUAUAAUCUCAUACCUAUUGACUGUUAAACAAAAAACAACAUGAAGUAUUAUCUGCAUCUGCCGAAAAGAAUCUAUAGACGAUAGAUAAAGGUUGGGAUAAUCUUGACAUGGAAGCAAAUAAGAAAGGCAUAGAAUUUGGAAGGAGCCUUCCUAAAAAAUAAUCAAGAUAAGAAUAAAACCUUUUUUAAGAUUAUCCGGCGUACUAUUAGUUCCGAUUCUCUCCCUUGCAGUC .((.(((((......((((..(..((((.((((.(((((((((((((.(((((..(((((((((.((....((((((..((..(((.((((..((.(((..............((((((((.......(((.(....))))..((((((((((.....))))))))))..................(((((((.((((......((((((((..(..((((....((((((.((((.....))))....(((((........)))))..))))))......)))).)..))))))))))))..))))))).....))))))))..((((.....(((((......)))))..........(((((((((.......)))))))))...................)))).......))).))..)))).)))..)).(((((.........)))))....))))))....)).)))))))))..)))))...((.((....)).))...))))))))..)))))))))....(((((.((((((((((..((....)).....((((((..........(((((....)))))..........((.......))......))))))))))))))))))))).........)))))..))))......))))))) (-160.00) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GACUGCAAGGGAGAGAAUCGGAACUAAUAGUACGCCGGAUAAUCUUAAAAAAGGUUUUAUUCUUAUCUUGAUUAUUUUUUAGGAAGGCUCCUUCCAAAUUCUAUGCCUUUCUUAUUUGCUUCCAUGUCAAGAUUAUCCCAACCUUUAUCUAUCGUCUAUAGAUUCUUUUCGGCAGAUGCAGAUAAUACUUCAUGUUGUUUUUUGUUUAACAGUCAAUAGGUAUGAGAUUAUAAUACCUGCAAAAAAACCGAUUCCGCCAUAUAGGACAGUUCGUAAUAUAAAUAUGGGAGUGCCAACAACAUUGAUUAACACCGUUUUUAGUGGCUCCUCUAUUGGAGCUGUAUCUGCAUAAGACACCAAUGCGUCCCAAAAAGAGAAUGAAAACCCUAUCAAUAUCCCCACAAUUGAAAAGAUUAGUUUUCUCUUAUUCAUUAUAUAUAAUUUGUGGUGUAUAAUUCGUCUUUUCAUCUCUAUACUCUAUUAGAACUUUUAUGUUUUUCUUUCUGUGUAGAAUCAGGCCAAUUCCACACCUACCGUUUCCAGGCGUUAAUGGGCAUCUCGUAAAUCUUGAUGGGGCUGAGACGGCAUUCAAGCGCAACUGCACCGCAUAAAACAACAAUAAAUAGGAAUCCAUACAAUAAGAUUGCUCUUCUUUUCUUUUUCAUACAGAUCA (((((...(..((((((.(((.((.....))...)))..((((((((..(((((((........((((((((........((((((((................)))))))).............))))))))......)))))))..........(((.(((((((.((.((....)).))..........(((((((((.(((....((((....((((((.........))))))((........(((.(((........)))....)))..............(((((((.....(((((................(..(((((......)))))..).(((.....)))...))))).((((((..((((..((((........................(((((((((.((((..........(((((((.......)))))))...)))).)))))))))..(((((((......(((((......))))).......))))))).....(((......((.(((.........))).)).....)))...))))...))))..))))))......)))))))..))...))))....))).)))))))))......))))))).)))...))))))))........))))))..)...))).)). (-149.27) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 412 98 56 169 129 tfor:TF2455|5end_conserved_hypothetical_protein;_possible_membrane_protein_2631959..2632189_POSITIVE 397 159 113 58 16 tfor:TF1241|5end_prolyl-tRNA_synthetase_1324711..1324941_POSITIVE 371 109 63 45 1 tfor:TF0414|5end_N-ethylammeline_chlorohydrolase_431789..432019_POSITIVE 368 105 61 220 175 tfor:TF0324|5end_conserved_hypothetical_protein_351228..351458_POSITIVE 364 178 138 41 4 tfor:TF1243|5end_periplasmic_protease_1327243..1327473_POSITIVE 363 99 56 221 169 tfor:TF0754|5end_GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-redu_ctase_(GDP-L-fucose_synthetase)_801631..801861_POSITIVE 358 105 66 51 11 tfor:TF0684|5end_conserved_hypothetical_protein_728853..729083_POSITIVE 353 159 112 88 24 tfor:TF1293|5end_ATPase,_possible_AAA_superfamily_1374579..1374809_POSITIVE 348 101 67 113 72 tfor:TF2911|5end_hypothetical_protein_3105871..3106101_POSITIVE 348 108 66 56 17 tfor:TF2884|5end_conserved_hypothetical_protein_3075057..3075287_POSITIVE 345 100 53 69 9 tfor:TF1023|5end_ABC_transporter,_permease_component_1079197..1079427_POSITIVE 343 100 56 176 130 tfor:TF1948|5end_conserved_hypothetical_protein_2095942..2096172_POSITIVE 341 120 75 50 3 tfor:TF1026|5end_beta-N-acetylglucosaminidase;_beta_lactamase_1082560..1082790_POSITIVE 340 98 56 65 19 tfor:TF0594|5end_conserved_hypothetical_protein;_possible_PAP2_superfamily_protein_626971..627201_POSITIVE 339 100 56 206 155 tfor:TF2259|5end_transfer_region-related_protein,_TraK_2429577..2429807_POSITIVE 337 105 67 209 167 tfor:TF0027|5end_conserved_hypothetical_protein_22866..23096_POSITIVE 335 99 54 71 26 tfor:TF2833|5end_lipid_A_disaccharide_synthase_3023973..3024203_POSITIVE 335 120 72 199 149 tfor:TF1070|5end_hydrolase_1139704..1139934_POSITIVE 334 98 53 53 4 tfor:TF2330|5end_conserved_hypothetical_protein_2489920..2490150_POSITIVE 334 103 68 62 16 tfor:TF0265|5end_conserved_hypothetical_protein,_Rhs_family_293279..293509_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 396 93 56 149 115 tfor:TF2454|3end_D-alanyl-D-alanine_dipeptidase_2632025..2632175_POSITIVE 371 109 63 45 1 tfor:TF0413|3end_succinyl-diaminopimelate_desuccinylase_431869..432019_POSITIVE 348 101 67 118 77 tfor:TF2909|3end_GTP-binding_protein,_possible_GTP1/OBG_family_3105956..3106106_POSITIVE 348 108 66 48 9 tfor:TF2883|3end_peptidyl-prolyl_cis-trans_isomerase_3075129..3075279_POSITIVE 340 98 56 65 19 tfor:TF0593|3end_membrane-associated_phospholipid_phosphatase_627051..627201_POSITIVE 330 158 114 137 93 tfor:TF2519|3end_membrane_protein,_metallopeptidase_M23/M37_family_2698997..2699147_POSITIVE 323 160 118 64 5 tfor:TF0112|3end_outer_membrane_protein_123027..123177_POSITIVE 322 160 112 146 83 tfor:TF1918|3end_hypothetical_protein_2070105..2070255_POSITIVE 320 90 57 108 82 tfor:TF2347|3end_outer_membrane_protein,_TonB_dependent_receptor_2511092..2511242_POSITIVE 320 150 102 146 81 tfor:TF2273|3end_conserved_hypothetical_protein_2436708..2436858_POSITIVE 318 460 416 139 96 tfor:TF1626|3end_nicotinate-nucleotide_adenylyltransferase_1740098..1740248_POSITIVE 317 98 61 62 24 tfor:TF2673|3end_conserved_hypothetical_protein_2848272..2848422_POSITIVE 317 160 113 99 42 tfor:TF2406|3end_anti-sigma_factor_2581659..2581809_POSITIVE 314 101 61 117 74 tfor:TF2264|3end_transfer_region-related_protein,_TraO_2433542..2433692_POSITIVE 313 540 492 84 34 tfor:TF3027|3end_zinc_metalloprotease_3251619..3251769_POSITIVE 312 116 75 144 103 tfor:TF3055|3end_hypothetical_protein_3279034..3279184_POSITIVE 312 158 113 81 17 tfor:TF2949|3end_dihydroxynaphthoate_synthase_(naphthoate_synthase)_3157479..3157629_POSITIVE 312 120 71 59 11 tfor:TF1818|3end_conserved_hypothetical_protein_1958754..1958904_POSITIVE 312 140 96 113 76 tfor:TF1295|3end_conserved_hypothetical_protein_1377256..1377406_POSITIVE 311 100 59 150 94 tfor:TF0291|3end_triose-phosphate_isomerase_320131..320281_POSITIVE