Origin IGS: tgtccattcgttacaattcttgttcgtagccccctatctgttgcgtacttaatacatctagctaatctttgaattccgattaaagtgcattcgcctccggtaaatacaactgttttaagagatgggaattcccttacggataagtctatgtaatatattatatcctcatatgtcattttcttactttttaccggagagcagttgaaacaacaattaggacaagcacttgtacactgataggtaactatcaatgatagtgtgtgaggttgaatgagctttatgtttaaatctaagaaagccattttatctacacagtttttaagatgcaaattataattcacaaataatatttttgcaaatgtataaaatttaatcgttattaaatgctatataaaaataaataatatcaatctgcaattcggccccatcggcttgctgtatgcccaacttgcgaaaataagcgctctatatcgacttacgcgacacctaccaccgcctttatgattacgaaacgacccgggagatcgaagacaaagaaacccgaaaccgcctgaataccctgtacgaccgtttcgtcggcgcttacggacatctcaacgcccgtaaaaacgccgaactcctgcgt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 acgcaggagttcggcgtttttacgggcgttgagatgtccgtaagcgccgacgaaacggtcgtacagggtattcaggcggtttcgggtttctttgtcttcgatctcccgggtcgtttcgtaatcataaaggcggtggtaggtgtcgcgtaagtcgatatagagcgcttattttcgcaagttgggcatacagcaagccgatggggccgaattgcagattgatattatttatttttatatagcatttaataacgattaaattttatacatttgcaaaaatattatttgtgaattataatttgcatcttaaaaactgtgtagataaaatggctttcttagatttaaacataaagctcattcaacctcacacactatcattgatagttacctatcagtgtacaagtgcttgtcctaattgttgtttcaactgctctccggtaaaaagtaagaaaatgacatatgaggatataatatattacatagacttatccgtaagggaattcccatctcttaaaacagttgtatttaccggaggcgaatgcactttaatcggaattcaaagattagctagatgtattaagtacgcaacagatagggggctacgaacaagaattgtaacgaatggaca Mask Tandem Repeat Region ================================================ tgtccattcgttacaattcttgttcgtagccccctatctgttgcgtacttaatacatctagctaatctttgaattccgattaaagtgcattcgcctccggtaaatacaactgttttaagagatgggaattcccttacggataagtctatgtaatatattatatcctcatatgtcattttcttactttttaccggagagcagttgaaacaacaattaggacaagcacttgtacactgataggtaactatcaatgatagtgtgtgaggttgaatgagctttatgtttaaatctaagaaagccattttatctacacagtttttaagatgcaaattataattcacaaataatatttttgcaaatgtataaaatttaatcgttattaaatgctatataaaaataaataatatcaatctgcaattcggccccatcggcttgctgtatgcccaacttgcgaaaataagcgctctatatcgacttacgcgacacctaccaccgcctttatgattacgaaacgacccgggagatcgaagacaaagaaacccgaaaccgcctgaataccctgtacgaccgtttcgtcggcgcttacggacatctcaacgcccgtaaaaacgccgaactcctgcgt Find is-nt database================================================ Query_seq: TF0850:TF0851|TF0850:TF0851:hypothetical protein:helicase SNF2 family:->->:899001..899625 625 tgtccattcgttacaattcttgttcgtagccccctatctgttgcgtacttaatacatctagctaatctttgaattccgattaaagtgcattcgcctccggtaaatacaactgttttaagagatgggaattcccttacggataagtctatgtaatatattatatcctcatatgtcattttcttactttttaccggagagcagttgaaacaacaattaggacaagcacttgtacactgataggtaactatcaatgatagtgtgtgaggttgaatgagctttatgtttaaatctaagaaagccattttatctacacagtttttaagatgcaaattataattcacaaataatatttttgcaaatgtataaaatttaatcgttattaaatgctatataaaaataaataatatcaatctgcaattcggccccatcggcttgctgtatgcccaacttgcgaaaataagcgctctatatcgacttacgcgacacctaccaccgcctttatgattacgaaacgacccgggagatcgaagacaaagaaacccgaaaccgcctgaataccctgtacgaccgtttcgtcggcgcttacggacatctcaacgcccgtaaaaacgccgaactcctgcgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0850:TF0851|TF0850:TF0851:hypothetical protein:helicase SNF2 family:->->:899001..899625 625 tgtccattcgttacaattcttgttcgtagccccctatctgttgcgtacttaatacatctagctaatctttgaattccgattaaagtgcattcgcctccggtaaatacaactgttttaagagatgggaattcccttacggataagtctatgtaatatattatatcctcatatgtcattttcttactttttaccggagagcagttgaaacaacaattaggacaagcacttgtacactgataggtaactatcaatgatagtgtgtgaggttgaatgagctttatgtttaaatctaagaaagccattttatctacacagtttttaagatgcaaattataattcacaaataatatttttgcaaatgtataaaatttaatcgttattaaatgctatataaaaataaataatatcaatctgcaattcggccccatcggcttgctgtatgcccaacttgcgaaaataagcgctctatatcgacttacgcgacacctaccaccgcctttatgattacgaaacgacccgggagatcgaagacaaagaaacccgaaaccgcctgaataccctgtacgaccgtttcgtcggcgcttacggacatctcaacgcccgtaaaaacgccgaactcctgcgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0850:TF0851|TF0850:TF0851:hypothetical protein:helicase SNF2 family:->->:899001..899625 625 tgtccattcgttacaattcttgttcgtagccccctatctgttgcgtacttaatacatctagctaatctttgaattccgattaaagtgcattcgcctccggtaaatacaactgttttaagagatgggaattcccttacggataagtctatgtaatatattatatcctcatatgtcattttcttactttttaccggagagcagttgaaacaacaattaggacaagcacttgtacactgataggtaactatcaatgatagtgtgtgaggttgaatgagctttatgtttaaatctaagaaagccattttatctacacagtttttaagatgcaaattataattcacaaataatatttttgcaaatgtataaaatttaatcgttattaaatgctatataaaaataaataatatcaatctgcaattcggccccatcggcttgctgtatgcccaacttgcgaaaataagcgctctatatcgacttacgcgacacctaccaccgcctttatgattacgaaacgacccgggagatcgaagacaaagaaacccgaaaccgcctgaataccctgtacgaccgtttcgtcggcgcttacggacatctcaacgcccgtaaaaacgccgaactcctgcgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 8 Min: 3 Max: 625 Len: 623 Subject: UniRef90_Q64WV8 Cluster: Hypothetical protein; n=1; Bacteroides fragilis|Rep: Hypothetical protein - Bacteroides fragilis HSP 1 e-value: 4.0E-17 bit: 90.5 Len: 279 Query Start:3 Query End:281 Subject Strand: null Subject Start: 4 Subject End: 95 .. I K L I Q P H T L S L I V T Y Q C T S A C P N C C F N C S P V K S K K M T Y E D I I Y Y I D L S V R E F P S L K T V V F T G G E C T L I G I Q R L A R C I K Y A T D R G L R T R I V T N G ........................................................................................................................................................................................................................................................................................................................................................ .. L N F I S P N T L S L L T T Y Y C T A A C K N C C F E C N Q E R R G R M S F K Q M E T Y I S E C V K A F P T I R L V V F S G G E C F S L K - D D L Y Q A I Y Y A H K K G L I T R V V T N G ........................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q7N3I6 Cluster: Similar to unknown protein; n=1; Photorhabdus luminescens subsp. laumondii|Rep: Similar to unknown protein - Photorhabdus luminescens subsp. laumondii HSP 1 e-value: 1.0E-16 bit: 88.6 Len: 264 Query Start:3 Query End:266 Subject Strand: null Subject Start: 13 Subject End: 99 .. P H T L S L I V T Y Q C T S A C P N C C F N C S P V K S K K M T Y E D I I Y Y I D L S V R E F P S L K T V V F T G G E C T L I G I Q R L A R C I K Y A T D R G L R T R I V T N G ....................................................................................................................................................................................................................................................................................................................................................................... .. P N T A T V I T T Y T C N A A C K E C C F E C N P S V K A R L S L D E I K Q F I A H S K A N F P G L K L V V F S G G E C F L L G - K D L I E A I R F A S D H G L L T R C V T N G ....................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8XXD4 Cluster: Putative predicted fe-s oxidoreductases protein; n=2; Ralstonia solanacearum|Rep: Putative predicted fe-s oxidoreductases protein - Ralstonia solanacearum (Pseudomonas solanacearum) HSP 1 e-value: 3.0E-12 bit: 73.9 Len: 291 Query Start:6 Query End:296 Subject Strand: null Subject Start: 6 Subject End: 101 ..... F L D L N I K L I Q P H T L S L I V T Y Q C T S A C P N C C F N C S P V K S K K M T Y E D I I Y Y I D L S V R E F P S L K T V V F T G G E C T L I G I Q R L A R C I K Y A T D R G L R T R I V T N ......................................................................................................................................................................................................................................................................................................................................... ..... Y I D R R V L S V F P D S L T I I P T Y R C N A Q C E Q C C F E S N P R I R T R L S L D D I K R S I D A A V D R F E N L K L I V F S G G E V F L L K - E D L F E A V A Y A A K K G L L T R C V T N ......................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8A5B3 Cluster: Putative DNA methylase; n=1; Bacteroides thetaiotaomicron|Rep: Putative DNA methylase - Bacteroides thetaiotaomicron HSP 1 e-value: 1.0E-8 bit: 62.0 Len: 174 Query Start:452 Query End:625 Subject Strand: null Subject Start: 590 Subject End: 647 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R K * A L Y I D L R D T Y H R L Y D Y E T T R E I E D K E T R N R L N T L Y D R F V G A Y G H L N A R K N A E L L R ................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R R A S L Y I E I R D T Y H H L Y E N E A A A H A A N P A L R T M L N T L Y D D F I R Q F G N L N D R K N I D L F R Subject: UniRef90_Q8ZZF5 Cluster: Metallo cofactor biosynthesis protein, conjectural; n=1; Pyrobaculum aerophilum|Rep: Metallo cofactor biosynthesis protein, conjectural - Pyrobaculum aerophilum HSP 1 e-value: 2.0E-7 bit: 58.5 Len: 261 Query Start:6 Query End:266 Subject Strand: null Subject Start: 7 Subject End: 91 ..... P H T L S L I V T Y Q C T S A C P N C C F N C S P V K S K K M T Y E D I I Y Y I D L S V R E - - - F P S L K T V V F T G G E C T L I G I Q R L A R C I K Y A T D R G L R T R I V T N ....................................................................................................................................................................................................................................................................................................................................................................... ..... P D T L V F M Y S Y K C N F E C D H C S I G S S P R E F T V L E L D - - - - Y L E K V I R E A Y W I P S I K V V V F T G G E P T L F P - E H L K R G I K L A A D L G F V T R L V T N ....................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q650D5 Cluster: Putative DNA methylase; n=1; Bacteroides fragilis|Rep: Putative DNA methylase - Bacteroides fragilis HSP 1 e-value: 2.0E-7 bit: 58.5 Len: 159 Query Start:464 Query End:622 Subject Strand: null Subject Start: 674 Subject End: 726 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I D L R D T Y H R L Y D Y E T T R E I E D K E T R N R L N T L Y D R F V G A Y G H L N A R K N A E L L ... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y V S L R D A Y E R L Y R Y E S L R R E A N V P W R E H L N T C Y D E F V M R Y G N L N A K Q N V K L V ... Subject: UniRef90_Q2ZHC8 Cluster: Hypothetical protein; n=1; Caldicellulosiruptor saccharolyticus DSM 8903|Rep: Hypothetical protein - Caldicellulosiruptor saccharolyticus DSM 8903 HSP 1 e-value: 2.0E-6 bit: 54.7 Len: 258 Query Start:3 Query End:260 Subject Strand: null Subject Start: 7 Subject End: 90 .. T L S L I V T Y Q C T S A C P N C C F N C S P V K S K K M T Y E D I I Y Y I D L S V R E F P S L K T V V F T G G E C T L I G I Q R L A R C I K Y A T D R G L R T R I V T N G ............................................................................................................................................................................................................................................................................................................................................................................. .. S V G I M L T K Q C T A E C D I C C F F C S L H K N E K M S K E L I V K I I D - E A K S V N S I S T F G I S G G E - P F L Y L D E L L F A I S L A T K S G F K T T C T T N G ............................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q44RK5 Cluster: Radical SAM; n=1; Chlorobium limicola DSM 245|Rep: Radical SAM - Chlorobium limicola DSM 245 HSP 1 e-value: 4.0E-6 bit: 53.9 Len: 252 Query Start:6 Query End:257 Subject Strand: null Subject Start: 14 Subject End: 97 ..... L S L I V T Y Q C T S A C P N C C F N C S P V K S K K M T Y E D I I Y Y I D - L S V R E F P S L K T V V F T G G E C T L I G I Q R L A R C I K Y A T D R G L R T R I V T N ................................................................................................................................................................................................................................................................................................................................................................................ ..... I S F M L T Y K C T I A C P H C I V N A G P N R K E E M D A V R A L D W I D Q A A A Y D E G K V R G L A L T G G E - P F Y N I D H L S R I S G Y A R E K G L V T S V V T N ................................................................................................................................................................................................................................................................................................................................................................................ tgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagccattttatctacacagtttttaagatgcaaattataattcacaaataatatttttgcaaatgtataaaatttaatcgttattaaatgctatataaaaataaataatatcaatctgcaattcggccccatcggcttgctgtatgcccaacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 153 End: 251 ........................................................................................................................................................ M Y Y I L I C H F L T F Y R R A V E T T I R T S T C T L I G N Y Q ...................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 373 End: 501 .................................................................................................................................................................................................................................................................................................................................................................................... M V I K C Y I K I N N I N L Q F G P I G L L Y A Q L A K I S A L Y R L T R H L P P P L ............................................................................................................................ Protein_Len: 45 Strand: + Start: 417 End: 551 ................................................................................................................................................................................................................................................................................................................................................................................................................................ M R P H R L A V C P T C E N K R S I S T Y A T P T T A F M I T K R P G R S K T K K P E T A .......................................................................... Protein_Len: 52 Strand: + Start: 470 End: 625 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M D L R D T Y H R L Y D Y E T T R E I E D K E T R N R L N T L Y D R F V G A Y G H L N A R K N A E L L R Protein_Len: 38 Strand: - Start: 479 End: 592 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. A V G V V A K I I V F R G P L D F V F F G S V A Q I G Q V V T E D A S V S M ................................. Protein_Len: 60 Strand: - Start: 3 End: 380 .. N F C C N P C A S T C Q Y T V I L S L T H P Q I L K I N L D L F A M K D V C N K L H L N Y N V F L I K A F T Y F K I T M ..................................................................................................................................................................................................................................................... tgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagccattttatctacacagtttttaagatgcaaattataattcacaaataatatttttgcaaatgtataaaatttaatcgttattaaatgctatataaaaataaataatatcaatctgcaattcggccccatcggcttgctgtatgcccaacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 88 Start: 330 End: 359 .........................................................................................................................................................................................................................................................................................................................................TTTGCAAAAATATTATTTGTGAATTATAAT.......................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 308 End: 337 ...................................................................................................................................................................................................................................................................................................................CTACACAGTTTTTAAGATGCAAATTATAAT................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagccattttatctacacagtttttaagatgcaaattataattcacaaataatatttttgcaaatgtataaaatttaatcgttattaaatgctatataaaaataaataatatcaatctgcaattcggccccatcggcttgctgtatgcccaacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TF0850:TF0851|TF0850:TF0851:hypothetical protein:helicase SNF2 family:->->:899001..899625 625 tgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagccattttatctacacagtttttaagatgcaaattataattcacaaataatatttttgcaaatgtataaaatttaatcgttattaaatgctatataaaaataaataatatcaatctgcaattcggccccatcggcttgctgtatgcccaacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 1 Min: 297 Max: 450 Len: 154 Subject: tfor_TF0850_TF0851|hypothetical protein:helicase SNF2 family|POSITIVE:POSITIVE|[899001,899625]|625 HSP 1 e-value: 1.0E-16 bit: 89.7 Len: 45 Query Start:297 Query End:341 Subject Strand: POSITIVE Subject Start: 297 Subject End: 341 ........................................................................................................................................................................................................................................................................................................agccattttatctacacagtttttaagatgcaaattataattcac............................................................................................................................................................................................................................................................................................ ........................................................................................................................................................................................................................................................................................................agccattttatctacacagtttttaagatgcaaattataattcac............................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-15 bit: 85.7 Len: 43 Query Start:408 Query End:450 Subject Strand: POSITIVE Subject Start: 408 Subject End: 450 .......................................................................................................................................................................................................................................................................................................................................................................................................................caatctgcaattcggccccatcggcttgctgtatgcccaactt............................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................caatctgcaattcggccccatcggcttgctgtatgcccaactt............................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGCCAUUUUAUCUACACAGUUUUUAAGAUGCAAAUUAUAAUUCACAAAUAAUAUUUUUGCAAAUGUAUAAAAUUUAAUCGUUAUUAAAUGCUAUAUAAAAAUAAAUAAUAUCAAUCUGCAAUUCGGCCCCAUCGGCUUGCUGUAUGCCCAACUU ...............(((((.....(((((((((.(((.(((....))).)))..)))))...((((((..(((((((....)))))))..))))))................)))).......((((.....)))).)))))........... (-19.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGUUGGGCAUACAGCAAGCCGAUGGGGCCGAAUUGCAGAUUGAUAUUAUUUAUUUUUAUAUAGCAUUUAAUAACGAUUAAAUUUUAUACAUUUGCAAAAAUAUUAUUUGUGAAUUAUAAUUUGCAUCUUAAAAACUGUGUAGAUAAAAUGGCU .........((((((...(((.....))).....(((((((((................(((((.(((((((....))))))).))))).(((..((((.......))))..)))..))))))))).........))))))............. (-26.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 350 150 115 211 167 tfor:TF2611|5end_conserved_hypothetical_protein_2787204..2787434_POSITIVE 341 148 113 54 19 tfor:TF1221|5end_conserved_hypothetical_protein_1307723..1307953_POSITIVE 331 148 117 61 29 tfor:TF1740|5end_hypothetical_protein_1868645..1868875_POSITIVE 323 136 108 76 45 tfor:TF2512|5end_possible_abortive_infection_protein_2690247..2690477_POSITIVE 317 149 111 203 157 tfor:TF1850|5end_Na+/H+-exchanging_protein_1998542..1998772_POSITIVE 314 150 112 63 11 tfor:TF2766|5end_shikimate_kinase_2951619..2951849_POSITIVE 311 148 116 67 34 tfor:TF2378|5end_peptide_chain_release_factor_1_2542682..2542912_POSITIVE 308 148 117 220 188 tfor:TF2789|5end_enoyl-[acyl-carrier-protein]_reductase_2972431..2972661_POSITIVE 306 150 111 129 88 tfor:TF1182|5end_hypothetical_protein_1268565..1268795_POSITIVE 305 142 114 72 41 tfor:TF2689|5end_hypothetical_protein_2864824..2865054_POSITIVE 305 148 115 64 28 tfor:TF0644|5end_pyruvate_phosphate_dikinase_685784..686014_POSITIVE 302 147 111 163 131 tfor:TF2657|5end_conserved_hypothetical_protein_2829729..2829959_POSITIVE 299 150 123 34 4 tfor:TF0150|5end_peptidyl-arginyl_deiminase_160077..160307_POSITIVE 297 140 114 213 188 tfor:TF1898|5end_RNA_polymerase_ECF-type_sigma_factor_2052115..2052345_POSITIVE 293 149 112 211 163 tfor:TF0810|5end_possible_outer_membrane_efflux_protein_868438..868668_POSITIVE 290 150 116 63 31 tfor:TF2097|5end_glucose_inhibited_division_protein_A_2269137..2269367_POSITIVE 289 148 102 181 120 tfor:TF2678|5end_GTP_cyclohydrolase_II_/3,4-dihydroxy-2-butanone-4-phoshate_synthase_2852036..2852266_POSITIVE 288 149 116 224 177 tfor:TF0452|5end_conserved_hypothetical_protein,_endonuclease/exonuclease/phosphatase_family_470972..471202_POSITIVE 287 150 111 64 23 tfor:TF2817|5end_hypothetical_protein_3007358..3007588_POSITIVE 284 149 120 35 2 tfor:TF2477|5end_phosphatase_2654229..2654459_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 341 148 113 48 13 tfor:TF1220|3end_conserved_hypothetical_protein_1307797..1307947_POSITIVE 306 150 111 129 88 tfor:TF1186|3end_hypothetical_protein_1269815..1269965_POSITIVE 305 142 114 130 99 tfor:TF2687|3end_iron-regulated_ABC-type_transporter_membrane_component_2864962..2865112_POSITIVE 299 150 123 34 4 tfor:TF0148|3end_conserved_hypothetical_protein_160157..160307_POSITIVE 297 140 114 125 100 tfor:TF1897|3end_conserved_hypothetical_protein;_possible_aminopeptidase_2052107..2052257_POSITIVE 289 148 102 144 83 tfor:TF2677|3end_aspartate_transaminase_2852079..2852229_POSITIVE 283 148 125 124 104 tfor:TF1069|3end_glucokinase_regulatory_protein,_sugar_phosphate_isomerase_domain_1139794..1139944_POSITIVE 281 148 118 135 103 tfor:TF1215|3end_haloacid_dehalogenase-like_hydrolase_1303216..1303366_POSITIVE 280 147 120 138 104 tfor:TF2391|3end_conserved_hypothetical_protein_2563464..2563614_POSITIVE 278 149 109 147 102 tfor:TF2483|3end_hypothetical_protein_2660022..2660172_POSITIVE 274 150 117 62 32 tfor:TF3138|3end_Na+-translocating_quinone_reductase,_subunit_D_3372654..3372804_POSITIVE 273 148 116 135 98 tfor:TF1443|3end_hypothetical_protein_1528203..1528353_POSITIVE 270 148 115 46 18 tfor:TF2034|3end_arabinose-proton_symporter_2194738..2194888_POSITIVE 266 143 113 131 107 tfor:TF3052|3end_conserved_hypothetical_protein_3278654..3278804_POSITIVE 266 149 115 45 17 tfor:TF2006|3end_uracil_permease_2158642..2158792_POSITIVE 266 149 115 133 98 tfor:TF0203|3end_PhoH-like_protein_230660..230810_POSITIVE 265 149 117 151 122 tfor:TF1782|3end_conserved_hypothetical_protein_1923333..1923483_POSITIVE 265 148 114 59 15 tfor:TF0336|3end_Xaa-Pro_aminopeptidase_361868..362018_POSITIVE 264 148 119 54 25 tfor:TF0818|3end_bifunctional_protein:__aspartokinase_I;_homoserine_dehydrogenase_878517..878667_POSITIVE 263 147 115 151 124 tfor:TF1944|3end_conserved_hypothetical_protein_2093309..2093459_POSITIVE