Origin IGS: taacggatattccgcgatagaggtttttcggttctgtcatcgagataaatcacaactgtgatttattaaaaacaatttgcgggagataaatcttcgcacagatttattacaaacaacgatgcgggaaataaatcttcacacagatttattacaaacaatttgcggggaataaatcttcacacagatttattacaaacaatttgcgggagataaatcttcacacagattttttcgttttaccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cgcttcgctctgaatgacaaattaatggttaattgtcaatggttaattgtcaattgttatgtcgggtacacggtatccgagcactgaggaacatccctccagccccccttcaaaggggggaagagcggtaaaacgaaaaaatctgtgtgaagatttatctcccgcaaattgtttgtaataaatctgtgtgaagatttattccccgcaaattgtttgtaataaatctgtgtgaagatttatttcccgcatcgttgtttgtaataaatctgtgcgaagatttatctcccgcaaattgtttttaataaatcacagttgtgatttatctcgatgacagaaccgaaaaacctctatcgcggaatatccgtta Mask Tandem Repeat Region ================================================ taacggatattccgcgatagaggtttttcggttctgtcatcgagataaatcacaactgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcgttttaccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttgtcattcagagcgaagcg Find is-nt database================================================ Query_seq: TF0684:TF0685|TF0684:TF0685:conserved hypothetical protein:hypothetical protein:->->:730625..730991 367 taacggatattccgcgatagaggtttttcggttctgtcatcgagataaatcacaactgtgatttattaaaaacaatttgcgggagataaatcttcgcacagatttattacaaacaacgatgcgggaaataaatcttcacacagatttattacaaacaatttgcggggaataaatcttcacacagatttattacaaacaatttgcgggagataaatcttcacacagattttttcgttttaccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0684:TF0685|TF0684:TF0685:conserved hypothetical protein:hypothetical protein:->->:730625..730991 367 taacggatattccgcgatagaggtttttcggttctgtcatcgagataaatcacaactgtgatttattaaaaacaatttgcgggagataaatcttcgcacagatttattacaaacaacgatgcgggaaataaatcttcacacagatttattacaaacaatttgcggggaataaatcttcacacagatttattacaaacaatttgcgggagataaatcttcacacagattttttcgttttaccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0684:TF0685|TF0684:TF0685:conserved hypothetical protein:hypothetical protein:->->:730625..730991 367 taacggatattccgcgatagaggtttttcggttctgtcatcgagataaatcacaactgtgatttattaaaaacaatttgcgggagataaatcttcgcacagatttattacaaacaacgatgcgggaaataaatcttcacacagatttattacaaacaatttgcggggaataaatcttcacacagatttattacaaacaatttgcgggagataaatcttcacacagattttttcgttttaccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taacggatattccgcgatagaggtttttcggttctgtcatcgagataaatcacaactgtgatttattaaaaacaatttgcgggagataaatcttcgcacagatttattacaaacaacgatgcgggaaataaatcttcacacagatttattacaaacaatttgcggggaataaatcttcacacagatttattacaaacaatttgcgggagataaatcttcacacagattttttcgttttaccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 65 End: 169 ................................................................ M K N N L R E I N L R T D L L Q T T M R E I N L H T D L L Q T I C G E ...................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 106 End: 210 ......................................................................................................... M T N N D A G N K S S H R F I T N N L R G I N L H T D L L Q T I C G R ............................................................................................................................................................. Protein_Len: 59 Strand: + Start: 132 End: 308 ................................................................................................................................... M F T Q I Y Y K Q F A G N K S S H R F I T N N L R E I N L H T D F F V L P L F P P L K G G W R D V P Q C S D T V Y P T ........................................................... Protein_Len: 50 Strand: + Start: 173 End: 322 ............................................................................................................................................................................ M F T Q I Y Y K Q F A G D K S S H R F F R F T A L P P F E G G L E G C S S V L G Y R V P D I T I D N ............................................. Protein_Len: 32 Strand: - Start: 240 End: 335 ............................................................................................................................................................................................................................................... R E E G R Q L P A P P I N R L A R I G H V R C L L Q C N V M S M ................................ Protein_Len: 43 Strand: - Start: 193 End: 321 ................................................................................................................................................................................................ L C N A P S L D E C L N K R K V A R G G K S P P S S P H E E T S P Y R T G S M V I S M .............................................. Protein_Len: 34 Strand: - Start: 69 End: 170 .................................................................... F C N A P S L D E C L N I V F L S A P F L D E C L N I V F L K R P M ..................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 40 End: 129 ....................................... R S L D C S H N I L F L K R S I F R R V S K N C V V I R S M .............................................................................................................................................................................................................................................. taacggatattccgcgatagaggtttttcggttctgtcatcgagataaatcacaactgtgatttattaaaaacaatttgcgggagataaatcttcgcacagatttattacaaacaacgatgcgggaaataaatcttcacacagatttattacaaacaatttgcggggaataaatcttcacacagatttattacaaacaatttgcgggagataaatcttcacacagattttttcgttttaccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taacggatattccgcgatagaggtttttcggttctgtcatcgagataaatcacaactgtgatttattaaaaacaatttgcgggagataaatcttcgcacagatttattacaaacaacgatgcgggaaataaatcttcacacagatttattacaaacaatttgcggggaataaatcttcacacagatttattacaaacaatttgcgggagataaatcttcacacagattttttcgttttaccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 53 HP_score: -3.7 Tail_Score: -3.56568 Start: 129 End: 148 Full_Region: gcaaattgtttgtaa taaatct gtgtga agattta tttcccgcatcgttg ................................................................................................................................taaatctgtgtgaagattta........................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TF0684:TF0685|TF0684:TF0685:conserved hypothetical protein:hypothetical protein:->->:730625..730991 367 taacggatattccgcgatagaggtttttcggttctgtcatcgagataaatcacaactgtgatttattaaaaacaatttgcgggagataaatcttcgcacagatttattacaaacaacgatgcgggaaataaatcttcacacagatttattacaaacaatttgcggggaataaatcttcacacagatttattacaaacaatttgcgggagataaatcttcacacagattttttcgttttaccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg Intra-Species Hit: Count: 10 Min: 1 Max: 367 Len: 367 Subject: tfor_TF0684_TF0685|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[730625,730991]|367 HSP 1 e-value: 0.0 bit: 728.0 Len: 367 Query Start:1 Query End:367 Subject Strand: POSITIVE Subject Start: 1 Subject End: 367 taacggatattccgcgatagaggtttttcggttctgtcatcgagataaatcacaactgtgatttattaaaaacaatttgcgggagataaatcttcgcacagatttattacaaacaacgatgcgggaaataaatcttcacacagatttattacaaacaatttgcggggaataaatcttcacacagatttattacaaacaatttgcgggagataaatcttcacacagattttttcgttttaccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg taacggatattccgcgatagaggtttttcggttctgtcatcgagataaatcacaactgtgatttattaaaaacaatttgcgggagataaatcttcgcacagatttattacaaacaacgatgcgggaaataaatcttcacacagatttattacaaacaatttgcggggaataaatcttcacacagatttattacaaacaatttgcgggagataaatcttcacacagattttttcgttttaccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 1.0E-49 bit: 198.0 Len: 128 Query Start:240 Query End:367 Subject Strand: POSITIVE Subject Start: 70 Subject End: 197 ...............................................................................................................................................................................................................................................ccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg ...............................................................................................................................................................................................................................................ccgctcttcccccctttgaaggggggctggggggatgttcctcagcgctcggataccgtgtatcacgcataacaattgacaattaacaattgacaattaaccattaatttgtcattcagagcgaagcg HSP 2 e-value: 1.0E-21 bit: 105.0 Len: 85 Query Start:246 Query End:330 Subject Strand: POSITIVE Subject Start: 467 Subject End: 551 .....................................................................................................................................................................................................................................................ttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccatt..................................... .....................................................................................................................................................................................................................................................ttcctccctttgaaggggggctggggggatgttcctcagcgctcggataccgtgtaccacgcataacaattaacaattgaccatt..................................... HSP 3 e-value: 4.0E-12 bit: 73.8 Len: 49 Query Start:103 Query End:151 Subject Strand: POSITIVE Subject Start: 993 Subject End: 1041 ......................................................................................................tttattacaaacaacgatgcgggaaataaatcttcacacagatttatta........................................................................................................................................................................................................................ ......................................................................................................tttattaaaaacaacgatgcgggagataaatcttcacgcagatttatta........................................................................................................................................................................................................................ HSP 4 e-value: 1.0E-11 bit: 71.9 Len: 52 Query Start:286 Query End:337 Subject Strand: POSITIVE Subject Start: 710 Subject End: 761 .............................................................................................................................................................................................................................................................................................gctcggataccgtgtacccgacataacaattgacaattaaccattgacaatt.............................. .............................................................................................................................................................................................................................................................................................gctcggataccgtgtaccacgcataacaattgacaattaaccattaacaatt.............................. HSP 5 e-value: 9.0E-10 bit: 65.9 Len: 45 Query Start:323 Query End:367 Subject Strand: POSITIVE Subject Start: 530 Subject End: 574 ..................................................................................................................................................................................................................................................................................................................................taaccattgacaattaaccattaatttgtcattcagagcgaagcg ..................................................................................................................................................................................................................................................................................................................................taacaattaacaattgaccattaatttgtcattcagagcgaagcg Subject: tfor_TF2817_TF2818|hypothetical protein:acetylornithine aminotransferase|POSITIVE:POSITIVE|[3007687,3007878]|192 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 128 Query Start:240 Query End:367 Subject Strand: NEGATIVE Subject Start: 19 Subject End: 134 ...............................................................................................................................................................................................................................................ccgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg ...............................................................................................................................................................................................................................................ccgctcttcccccctttgaaggggggc-----ggatgttcctctgcgttcggataccgtgtacccggcataacaatt-------aaccattgacaattaaccattaatttgtcattcagagcgaagcg Subject: tfor_TF2823_TF2824|TPR-containing protein:nucleoside-transporting protein nupG|POSITIVE:POSITIVE|[3014398,3014840]|443 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 127 Query Start:241 Query End:367 Subject Strand: NEGATIVE Subject Start: 158 Subject End: 277 ................................................................................................................................................................................................................................................cgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg ................................................................................................................................................................................................................................................cgctcttcctccctttgaagggggggaggggggatgtccctctgcgttcggataccgtgtacccggcataacaattaac-----acc--tgacaattaaccattaatttgtcattcagagcgaagcg Subject: tfor_TF2500_TF2501|ABC transporter, ATP-binding protein:DNA mismatch repair protein|POSITIVE:POSITIVE|[2675363,2676419]|1057 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 70 Query Start:184 Query End:253 Subject Strand: NEGATIVE Subject Start: 874 Subject End: 943 .......................................................................................................................................................................................gatttattacaaacaatttgcgggagataaatcttcacacagattttttcgttttaccgctcttcccccc.................................................................................................................. .......................................................................................................................................................................................gatttatcagaaacaatttgcggggaataaatcttcacacagattttttcgttttaccgctcttcccccc.................................................................................................................. HSP 2 e-value: 3.0E-19 bit: 97.6 Len: 122 Query Start:241 Query End:362 Subject Strand: NEGATIVE Subject Start: 735 Subject End: 843 ................................................................................................................................................................................................................................................cgctcttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcg..... ................................................................................................................................................................................................................................................cgctcttcccccctttgaagggggg------ggatgtccctctgcgttcggataccgtgtacccggcataacaattgacaatt-------gacaattaaccattaatatgtcattcagagcg..... HSP 3 e-value: 6.0E-14 bit: 79.8 Len: 64 Query Start:42 Query End:105 Subject Strand: NEGATIVE Subject Start: 898 Subject End: 961 .........................................gagataaatcacaactgtgatttattaaaaacaatttgcgggagataaatcttcgcacagattt...................................................................................................................................................................................................................................................................... .........................................gagataattcacaactgtgatttatcagaaacaatttgcggggaataaatcttcacacagattt...................................................................................................................................................................................................................................................................... HSP 4 e-value: 1.0E-12 bit: 75.8 Len: 46 Query Start:143 Query End:188 Subject Strand: NEGATIVE Subject Start: 898 Subject End: 943 ..............................................................................................................................................gatttattacaaacaatttgcggggaataaatcttcacacagattt................................................................................................................................................................................... ..............................................................................................................................................gatttatcagaaacaatttgcggggaataaatcttcacacagattt................................................................................................................................................................................... HSP 5 e-value: 4.0E-9 bit: 63.9 Len: 48 Query Start:42 Query End:89 Subject Strand: NEGATIVE Subject Start: 955 Subject End: 1002 .........................................gagataaatcacaactgtgatttattaaaaacaatttgcgggagataa...................................................................................................................................................................................................................................................................................... .........................................gagacaaatcacaactatgatctattaaaaacaatttgcaggagataa...................................................................................................................................................................................................................................................................................... HSP 6 e-value: 6.0E-8 bit: 60.0 Len: 42 Query Start:298 Query End:339 Subject Strand: POSITIVE Subject Start: 497 Subject End: 538 .........................................................................................................................................................................................................................................................................................................tgtacccgacataacaattgacaattaaccattgacaattaa............................ .........................................................................................................................................................................................................................................................................................................tgtacccggcatgaccattgacaattaaccattgacaattaa............................ Subject: tfor_TF1483_TF1484|glycosyltransferase family protein:penicillin binding protein|POSITIVE:POSITIVE|[1578886,1579698]|813 HSP 1 e-value: 3.0E-19 bit: 97.6 Len: 122 Query Start:246 Query End:367 Subject Strand: NEGATIVE Subject Start: 279 Subject End: 396 .....................................................................................................................................................................................................................................................ttcccccctttgaaggggggctg---gagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaaccattaatttgtcattcagagcgaagcg .....................................................................................................................................................................................................................................................ttcccccctttgaagggggggggagggggggatgttcctctgcggtcggataccatgtacccggcataacaattaacaatt-------gacaattaaccattaatttgtcattcagagcgaagcg HSP 2 e-value: 1.0E-11 bit: 71.9 Len: 83 Query Start:241 Query End:323 Subject Strand: NEGATIVE Subject Start: 18 Subject End: 103 ................................................................................................................................................................................................................................................cgctcttcccccctttgaaggggggctg---gagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaatt............................................ ................................................................................................................................................................................................................................................cgctcttcccccctttgaagggggggggagggggggatgttcctctgcggtcggataccatgtacccggcataacaattaacaatt............................................ Subject: tfor_TF0624_TF0625|Xaa-Pro dipeptidase (aminopeptidase P):hypothetical protein|POSITIVE:POSITIVE|[661076,661282]|207 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 64 Query Start:42 Query End:105 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 177 .........................................gagataaatcacaactgtgatttattaaaaacaatttgcgggagataaatcttcgcacagattt...................................................................................................................................................................................................................................................................... .........................................gagataaatcacaactgtgatttatcagaaacaatttgcgggagacaaatcttcacacagattt...................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 46 Query Start:184 Query End:229 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 159 .......................................................................................................................................................................................gatttattacaaacaatttgcgggagataaatcttcacacagattt.......................................................................................................................................... .......................................................................................................................................................................................gatttatcagaaacaatttgcgggagacaaatcttcacacagattt.......................................................................................................................................... Subject: tfor_TF1578_TF1579|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1686477,1687028]|552 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 99 Query Start:241 Query End:339 Subject Strand: POSITIVE Subject Start: 345 Subject End: 445 ................................................................................................................................................................................................................................................cgctcttcccccctttgaaggggggct--ggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaattaa............................ ................................................................................................................................................................................................................................................cgctcttcccccctttgaaggggggggagggggggatgtccctctgcgctcggataccgtgtaccacgcataacaattaacaattaaccattaacaattaa............................ HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 40 Query Start:323 Query End:362 Subject Strand: POSITIVE Subject Start: 22 Subject End: 61 ..................................................................................................................................................................................................................................................................................................................................taaccattgacaattaaccattaatttgtcattcagagcg..... ..................................................................................................................................................................................................................................................................................................................................taacaattaacaattaaccattaatttgtcattcagagcg..... Subject: tfor_TF1848_TF1850|conserved hypothetical protein:Na+/H+-exchanging protein|POSITIVE:POSITIVE|[1998005,1998681]|677 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 45 Query Start:318 Query End:362 Subject Strand: NEGATIVE Subject Start: 515 Subject End: 559 .............................................................................................................................................................................................................................................................................................................................acaattaaccattgacaattaaccattaatttgtcattcagagcg..... .............................................................................................................................................................................................................................................................................................................................acaattaaccattgaccattaaccattaatttgtcattcagagcg..... HSP 2 e-value: 1.0E-11 bit: 71.9 Len: 92 Query Start:246 Query End:337 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 269 .....................................................................................................................................................................................................................................................ttcccccctttgaaggggggctggagggatgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaaccattgacaatt.............................. .....................................................................................................................................................................................................................................................ttcccccctttgaaggggggaggg-gggatgttcctctgcgttcggattccgtgtacccggcataacaattaaccattgacaattaacaatt.............................. Subject: tfor_TF0603_TF0604|glycosyltransferase:hypothetical protein|POSITIVE:POSITIVE|[634899,635524]|626 HSP 1 e-value: 9.0E-10 bit: 65.9 Len: 72 Query Start:254 Query End:325 Subject Strand: NEGATIVE Subject Start: 219 Subject End: 291 .............................................................................................................................................................................................................................................................tttgaaggggggctggaggg-atgttcctcagtgctcggataccgtgtacccgacataacaattgacaattaa.......................................... .............................................................................................................................................................................................................................................................tttgaaggggggctgggggggatgttcctctgcgttcggataccgtgtaccatgcataacaattaacaattaa.......................................... HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 52 Query Start:288 Query End:339 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 109 ...............................................................................................................................................................................................................................................................................................tcggataccgtgtacccgacataacaattgacaattaaccattgacaattaa............................ ...............................................................................................................................................................................................................................................................................................tcggataccgtgtaccacgcataacaattgacaattgaccattaacaattaa............................ HSP 3 e-value: 4.0E-9 bit: 63.9 Len: 36 Query Start:332 Query End:367 Subject Strand: NEGATIVE Subject Start: 198 Subject End: 233 ...........................................................................................................................................................................................................................................................................................................................................acaattaaccattaatttgtcattcagagcgaagcg ...........................................................................................................................................................................................................................................................................................................................................acaattaacaattaatttgtcattcagagcgaagcg Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACGGAUAUUCCGCGAUAGAGGUUUUUCGGUUCUGUCAUCGAGAUAAAUCACAACUGUGAUUUAUUAAAAACAAUUUGCGGGAGAUAAAUCUUCGCACAGAUUUAUUACAAACAACGAUGCGGGAAAUAAAUCUUCACACAGAUUUAUUACAAACAAUUUGCGGGGAAUAAAUCUUCACACAGAUUUAUUACAAACAAUUUGCGGGAGAUAAAUCUUCACACAGAUUUUUUCGUUUUACCGCUCUUCCCCCCUUUGAAGGGGGGCUGGAGGGAUGUUCCUCAGUGCUCGGAUACCGUGUACCCGACAUAACAAUUGACAAUUAACCAUUGACAAUUAACCAUUAAUUUGUCAUUCAGAGCGAAGCG .((((((...(((((((.....((((.....(((((.(((((.((((((((((....))))))))))......((((((.((((((....))))).).))))))............))))))))))(((((((((......)))))))))..))))...))))))).(((((((((......)))))))))......((((((.((((((....))))).).))))))..))))))....((((((.(((((((....)))))))...(((((....))))).((((.(((...))).))))..((((....(((((.((((.....)))).)))))...........))))....))))))..... (-100.76) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGCUUCGCUCUGAAUGACAAAUUAAUGGUUAAUUGUCAAUGGUUAAUUGUCAAUUGUUAUGUCGGGUACACGGUAUCCGAGCACUGAGGAACAUCCCUCCAGCCCCCCUUCAAAGGGGGGAAGAGCGGUAAAACGAAAAAAUCUGUGUGAAGAUUUAUCUCCCGCAAAUUGUUUGUAAUAAAUCUGUGUGAAGAUUUAUUCCCCGCAAAUUGUUUGUAAUAAAUCUGUGUGAAGAUUUAUUUCCCGCAUCGUUGUUUGUAAUAAAUCUGUGCGAAGAUUUAUCUCCCGCAAAUUGUUUUUAAUAAAUCACAGUUGUGAUUUAUCUCGAUGACAGAACCGAAAAACCUCUAUCGCGGAAUAUCCGUUA ....(((((((..(((((((.((.(..(((((((......)))))))..).))))))))).((((((((...)))))))).....((((......))))...(((((((....))))))).)))))))...((((...((((((......)))))).....((((...((((..(..((((((((.((((.(((((((((.(..((((..(((....(((((((((......)))))))))....)))...))))..).))))))))).)))).))))))))..)..)))).(((((....(((((((((....)))))))))......)))))..................))))......)))). (-105.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 900 290 241 60 10 tfor:TF2745|5end_hypothetical_protein_2927562..2927792_POSITIVE 846 300 251 68 16 tfor:TF0828|5end_hypothetical_protein_887090..887320_POSITIVE 845 300 251 174 122 tfor:TF3107|5end_hypothetical_protein_3338459..3338689_POSITIVE 845 300 251 70 18 tfor:TF3106|5end_hypothetical_protein_3338355..3338585_POSITIVE 812 290 241 195 151 tfor:TF2818|5end_acetylornithine_aminotransferase_3007739..3007969_POSITIVE 762 290 241 225 175 tfor:TF0540|5end_conserved_hypothetical_protein;_possible_surface_protein_567286..567516_POSITIVE 752 300 251 70 21 tfor:TF2746|5end_hypothetical_protein_2927996..2928226_POSITIVE 750 300 251 77 26 tfor:TF1842|5end_hypothetical_protein_1992571..1992801_POSITIVE 729 287 241 208 164 tfor:TF1840|5end_transposase_1990221..1990451_POSITIVE 721 100 51 180 131 tfor:TF0625|5end_hypothetical_protein_661143..661373_POSITIVE 664 89 42 194 147 tfor:TF2501|5end_DNA_mismatch_repair_protein_2676280..2676510_POSITIVE 631 360 316 48 4 tfor:TF2816|5end_hypothetical_protein_3006925..3007155_POSITIVE 604 330 281 229 180 tfor:TF1850|5end_Na+/H+-exchanging_protein_1998542..1998772_POSITIVE 583 90 42 214 166 tfor:TF2518|5end_ATP-dependent_DNA_helicase_2695541..2695771_POSITIVE 555 360 316 136 92 tfor:TF1846|5end_hypothetical_protein_1996726..1996956_POSITIVE 550 340 291 102 60 tfor:TF1183|5end_hypothetical_protein_1268391..1268621_POSITIVE 543 359 316 195 152 tfor:TF0018|5end_hypothetical_protein_11250..11480_POSITIVE 543 359 316 107 64 tfor:TF0017|5end_hypothetical_protein_10504..10734_POSITIVE 504 360 314 116 71 tfor:TF1841|5end_hypothetical_protein_1991936..1992166_POSITIVE 481 319 271 101 50 tfor:TF0542|5end_hypothetical_protein_571918..572148_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 944 290 241 107 58 tfor:TF0821|3end_hypothetical_protein_880195..880345_POSITIVE 889 290 241 128 77 tfor:TF0370|3end_hypothetical_protein_386317..386467_POSITIVE 808 287 241 99 50 tfor:TF2651|3end_hypothetical_protein_2822014..2822164_POSITIVE 792 279 231 75 25 tfor:TF0828|3end_hypothetical_protein_887508..887658_POSITIVE 745 320 271 70 21 tfor:TF1483|3end_glycosyltransferase_family_protein_1578825..1578975_POSITIVE 631 360 316 65 21 tfor:TF2817|3end_hypothetical_protein_3007626..3007776_POSITIVE 583 90 42 73 25 tfor:TF2517|3end_hypothetical_protein_2695480..2695630_POSITIVE 554 277 243 151 116 tfor:TF2816|3end_hypothetical_protein_3007184..3007334_POSITIVE 543 359 316 96 53 tfor:TF0017|3end_hypothetical_protein_11231..11381_POSITIVE 543 359 316 104 61 tfor:TF0016|3end_hypothetical_protein_10581..10731_POSITIVE 498 262 231 143 115 tfor:TF1842|3end_hypothetical_protein_1992800..1992950_POSITIVE 490 330 282 125 79 tfor:TF3003|3end_hypothetical_protein_3220629..3220779_POSITIVE 489 330 285 89 48 tfor:TF2823|3end_TPR-containing_protein_3014337..3014487_POSITIVE 469 285 241 64 22 tfor:TF0018|3end_hypothetical_protein_12091..12241_POSITIVE 468 360 327 34 1 tfor:TF1846|3end_hypothetical_protein_1997015..1997165_POSITIVE 460 290 243 99 45 tfor:TF1588|3end_hypothetical_protein_1702560..1702710_POSITIVE 454 285 241 91 46 tfor:TF1762|3end_hypothetical_protein_1899648..1899798_POSITIVE 444 290 242 54 2 tfor:TF1590|3end_hypothetical_protein_1706043..1706193_POSITIVE 421 309 261 50 11 tfor:TF1014|3end_glucose-6-phosphate_isomerase_1072474..1072624_POSITIVE 401 288 242 62 7 tfor:TF2264|3end_transfer_region-related_protein,_TraO_2433542..2433692_POSITIVE