Origin IGS: tagcaacccaaccattatccatctaaccacaacaaaaaaacgcttcatcagaaaaaaaactttgtatatgatattttttatatctttgtcatcaaatatatgaaacgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatctacccccccccgttaatattatttaacaaaaacatctataggcatagctgccttttcgtgtggcagagcattggagcagggaaccattgcgttacgacgtactggagattcgtacgccctgacacaaagtcagtagaaaacagtccggtattggccgaatgccagaaaacatcgggtgaaacgcgggcgatttcaggccttgcgagccgacgttgcgttgccttccgctggtcttccgttccatccaaccgaagttccgttgaacccaacgaaacttgcattagaaagaacgaatcttgttcaaacatctcccaaacacgcgttgtatcgtcccgaagttctgttgaacgcaacgagccacgcgtacgattatatggaggcgtcgtgggtgagaacgaatgttctgttgctccaatgaacc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ggttcattggagcaacagaacattcgttctcacccacgacgcctccatataatcgtacgcgtggctcgttgcgttcaacagaacttcgggacgatacaacgcgtgtttgggagatgtttgaacaagattcgttctttctaatgcaagtttcgttgggttcaacggaacttcggttggatggaacggaagaccagcggaaggcaacgcaacgtcggctcgcaaggcctgaaatcgcccgcgtttcacccgatgttttctggcattcggccaataccggactgttttctactgactttgtgtcagggcgtacgaatctccagtacgtcgtaacgcaatggttccctgctccaatgctctgccacacgaaaaggcagctatgcctatagatgtttttgttaaataatattaacgggggggggtagataattgatggcaagctctctttctttccttcagaatagtgcacacgaagagaatgaacactttttataatattgttcatcaagatattaaagtttgtcttcttctctttcatgtctcgtttttatgagattgacgcccttggtcgtttcatatatttgatgacaaagatataaaaaatatcatatacaaagttttttttctgatgaagcgtttttttgttgtggttagatggataatggttgggttgcta Mask Tandem Repeat Region ================================================ tagcaacccaaccattatccatctaaccacaacaaaaaaacgcttcatcagaaaaaaaactttgtatatgatattttttatatctttgtcatcaaatatatgaaacgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatctacccccccccgttaatattatttaacaaaaacatctataggcatagctgccttttcgtgtggcagagcattggagcagggaaccattgcgttacgacgtactggagattcgtacgccctgacacaaagtcagtagaaaacagtccggtattggccgaatgccagaaaacatcgggtgaaacgcgggcgatttcaggccttgcgagccgacgttgcgttgccttccgctggtcttccgttccatccaaccgaagttccgttgaacccaacgaaacttgcattagaaagaacgaatcttgttcaaacatctcccaaacacgcgttgtatcgtcccgaagttctgttgaacgcaacgagccacgcgtacgattatatggaggcgtcgtgggtgagaacgaatgttctgttgctccaatgaacc Find is-nt database================================================ Query_seq: TF0638:TF0639|TF0638:TF0639:GTP-binding protein LepA:hypothetical protein:->->:677344..678016 673 tagcaacccaaccattatccatctaaccacaacaaaaaaacgcttcatcagaaaaaaaactttgtatatgatattttttatatctttgtcatcaaatatatgaaacgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatctacccccccccgttaatattatttaacaaaaacatctataggcatagctgccttttcgtgtggcagagcattggagcagggaaccattgcgttacgacgtactggagattcgtacgccctgacacaaagtcagtagaaaacagtccggtattggccgaatgccagaaaacatcgggtgaaacgcgggcgatttcaggccttgcgagccgacgttgcgttgccttccgctggtcttccgttccatccaaccgaagttccgttgaacccaacgaaacttgcattagaaagaacgaatcttgttcaaacatctcccaaacacgcgttgtatcgtcccgaagttctgttgaacgcaacgagccacgcgtacgattatatggaggcgtcgtgggtgagaacgaatgttctgttgctccaatgaacc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0638:TF0639|TF0638:TF0639:GTP-binding protein LepA:hypothetical protein:->->:677344..678016 673 tagcaacccaaccattatccatctaaccacaacaaaaaaacgcttcatcagaaaaaaaactttgtatatgatattttttatatctttgtcatcaaatatatgaaacgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatctacccccccccgttaatattatttaacaaaaacatctataggcatagctgccttttcgtgtggcagagcattggagcagggaaccattgcgttacgacgtactggagattcgtacgccctgacacaaagtcagtagaaaacagtccggtattggccgaatgccagaaaacatcgggtgaaacgcgggcgatttcaggccttgcgagccgacgttgcgttgccttccgctggtcttccgttccatccaaccgaagttccgttgaacccaacgaaacttgcattagaaagaacgaatcttgttcaaacatctcccaaacacgcgttgtatcgtcccgaagttctgttgaacgcaacgagccacgcgtacgattatatggaggcgtcgtgggtgagaacgaatgttctgttgctccaatgaacc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0638:TF0639|TF0638:TF0639:GTP-binding protein LepA:hypothetical protein:->->:677344..678016 673 tagcaacccaaccattatccatctaaccacaacaaaaaaacgcttcatcagaaaaaaaactttgtatatgatattttttatatctttgtcatcaaatatatgaaacgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatctacccccccccgttaatattatttaacaaaaacatctataggcatagctgccttttcgtgtggcagagcattggagcagggaaccattgcgttacgacgtactggagattcgtacgccctgacacaaagtcagtagaaaacagtccggtattggccgaatgccagaaaacatcgggtgaaacgcgggcgatttcaggccttgcgagccgacgttgcgttgccttccgctggtcttccgttccatccaaccgaagttccgttgaacccaacgaaacttgcattagaaagaacgaatcttgttcaaacatctcccaaacacgcgttgtatcgtcccgaagttctgttgaacgcaacgagccacgcgtacgattatatggaggcgtcgtgggtgagaacgaatgttctgttgctccaatgaacc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tagcaacccaaccattatccatctaaccacaacaaaaaaacgcttcatcagaaaaaaaactttgtatatgatattttttatatctttgtcatcaaatatatgaaacgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatctacccccccccgttaatattatttaacaaaaacatctataggcatagctgccttttcgtgtggcagagcattggagcagggaaccattgcgttacgacgtactggagattcgtacgccctgacacaaagtcagtagaaaacagtccggtattggccgaatgccagaaaacatcgggtgaaacgcgggcgatttcaggccttgcgagccgacgttgcgttgccttccgctggtcttccgttccatccaaccgaagttccgttgaacccaacgaaacttgcattagaaagaacgaatcttgttcaaacatctcccaaacacgcgttgtatcgtcccgaagttctgttgaacgcaacgagccacgcgtacgattatatggaggcgtcgtgggtgagaacgaatgttctgttgctccaatgaacc Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 290 End: 385 ................................................................................................................................................................................................................................................................................................. M G I A A F S C G R A L E Q G T I A L R R T G D S Y A L T Q S Q ................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 428 End: 667 ........................................................................................................................................................................................................................................................................................................................................................................................................................................... M K R G R F Q A L R A D V A L P S A G L P F H P T E V P L N P T K L A L E R T N L V Q T S P K H A L Y R P E V L L N A T ...... Protein_Len: 60 Strand: + Start: 139 End: 672 .......................................................................................................................................... M K E K K T N F N I L M N N I I K S V H S L R V H Y S E G K K E S L P S I I Y P P P L I L F N K N I Y R H S C L F V W Q . Protein_Len: 44 Strand: - Start: 536 End: 667 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F S R I K N L C R G F V R Q I T G F N Q Q V C R A V R V I I H L R R P H S R I N Q Q E M ...... Protein_Len: 50 Strand: - Start: 347 End: 496 .......................................................................................................................................................................................................................................................................................................................................................... S T S S I R V G Q C L T L L F C D P I P R I G S F M P H F A P S K L G Q S G V N R Q R G S T K R E M ................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 291 End: 668 .................................................................................................................................................................................................................................................................................................. T G D L R L E T S G L S V Q M L F F S D Q E F M E W V R T T D D R L E T S R L S G R T R N Y P P T T P S F S H E T A G M ..... Protein_Len: 30 Strand: - Start: 127 End: 216 .............................................................................................................................. L F S V H F L L L C V K I D Q H V I N Y F T N M R K T H V M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: - Start: 81 End: 185 ................................................................................ I K T M L Y I F R G L A D I E Y F R S M F S F F V F K L I K I F L I M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 33 Strand: - Start: 1 End: 99 L L G V M I W R V V V F F R K M L F F V K Y I I N K I D K D D F M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. tagcaacccaaccattatccatctaaccacaacaaaaaaacgcttcatcagaaaaaaaactttgtatatgatattttttatatctttgtcatcaaatatatgaaacgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatctacccccccccgttaatattatttaacaaaaacatctataggcatagctgccttttcgtgtggcagagcattggagcagggaaccattgcgttacgacgtactggagattcgtacgccctgacacaaagtcagtagaaaacagtccggtattggccgaatgccagaaaacatcgggtgaaacgcgggcgatttcaggccttgcgagccgacgttgcgttgccttccgctggtcttccgttccatccaaccgaagttccgttgaacccaacgaaacttgcattagaaagaacgaatcttgttcaaacatctcccaaacacgcgttgtatcgtcccgaagttctgttgaacgcaacgagccacgcgtacgattatatggaggcgtcgtgggtgagaacgaatgttctgttgctccaatgaacc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tagcaacccaaccattatccatctaaccacaacaaaaaaacgcttcatcagaaaaaaaactttgtatatgatattttttatatctttgtcatcaaatatatgaaacgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatctacccccccccgttaatattatttaacaaaaacatctataggcatagctgccttttcgtgtggcagagcattggagcagggaaccattgcgttacgacgtactggagattcgtacgccctgacacaaagtcagtagaaaacagtccggtattggccgaatgccagaaaacatcgggtgaaacgcgggcgatttcaggccttgcgagccgacgttgcgttgccttccgctggtcttccgttccatccaaccgaagttccgttgaacccaacgaaacttgcattagaaagaacgaatcttgttcaaacatctcccaaacacgcgttgtatcgtcccgaagttctgttgaacgcaacgagccacgcgtacgattatatggaggcgtcgtgggtgagaacgaatgttctgttgctccaatgaacc Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 54 HP_score: -2.9 Tail_Score: -3.97388 Start: 70 End: 84 Full_Region: AAAAACTTTGTATAT GATAT TTTTT ATATC TTTGTCATCAAATAT .....................................................................GATATTTTTTATATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 73 HP_score: -2.7 Tail_Score: -5.11063 Start: 285 End: 302 Full_Region: tgccacacgaaaagg cagctat gcct atagatg tttttgttaaataat ............................................................................................................................................................................................................................................................................................cagctatgcctatagatg................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 70 HP_score: -5.8 Tail_Score: -4.34402 Start: 293 End: 304 Full_Region: ACAAAAACATCTATA GGCA TAGC TGCC TTTTCGTGTGGCAGA ....................................................................................................................................................................................................................................................................................................GGCATAGCTGCC................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 41 HP_score: -2.6 Tail_Score: -2.76263 Start: 339 End: 379 Full_Region: tgttttctactgact ttgtgtcagggcgtac gaatctcca gtacgtcgtaacgcaa tggttccctgctcca ..................................................................................................................................................................................................................................................................................................................................................ttgtgtcagggcgtacgaatctccagtacgtcgtaacgcaa...................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 72 HP_score: -9.5 Tail_Score: -3.19192 Start: 506 End: 527 Full_Region: ttctttctaatgcaa gtttcgttg ggtt caacggaac ttcggttggatggaa .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtttcgttgggttcaacggaac.................................................................................................................................................. Find igs database================================================ Query_seq: TF0638:TF0639|TF0638:TF0639:GTP-binding protein LepA:hypothetical protein:->->:677344..678016 673 tagcaacccaaccattatccatctaaccacaacaaaaaaacgcttcatcagaaaaaaaactttgtatatgatattttttatatctttgtcatcaaatatatgaaacgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatctacccccccccgttaatattatttaacaaaaacatctataggcatagctgccttttcgtgtggcagagcattggagcagggaaccattgcgttacgacgtactggagattcgtacgccctgacacaaagtcagtagaaaacagtccggtattggccgaatgccagaaaacatcgggtgaaacgcgggcgatttcaggccttgcgagccgacgttgcgttgccttccgctggtcttccgttccatccaaccgaagttccgttgaacccaacgaaacttgcattagaaagaacgaatcttgttcaaacatctcccaaacacgcgttgtatcgtcccgaagttctgttgaacgcaacgagccacgcgtacgattatatggaggcgtcgtgggtgagaacgaatgttctgttgctccaatgaacc Intra-Species Hit: Count: 2 Min: 1 Max: 673 Len: 673 Subject: tfor_TF0638_TF0639|GTP-binding protein LepA:hypothetical protein|POSITIVE:POSITIVE|[677344,678016]|673 HSP 1 e-value: 0.0 bit: 1191.0 Len: 673 Query Start:1 Query End:673 Subject Strand: POSITIVE Subject Start: 1 Subject End: 673 tagcaacccaaccattatccatctaaccacaacnnnnnnncgcttcatcagnnnnnnnnctttgtatatgatattttttatatctttgtcatcaaatatatgaaacgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatctannnnnnnnngttaatattatttaacaaaaacatctataggcatagctgccttttcgtgtggcagagcattggagcagggaaccattgcgttacgacgtactggagattcgtacgccctgacacaaagtcagtagaaaacagtccggtattggccgaatgccagaaaacatcgggtgaaacgcgggcgatttcaggccttgcgagccgacgttgcgttgccttccgctggtcttccgttccatccaaccgaagttccgttgaacccaacgaaacttgcattagaaagaacgaatcttgttcaaacatctcccaaacacgcgttgtatcgtcccgaagttctgttgaacgcaacgagccacgcgtacgattatatggaggcgtcgtgggtgagaacgaatgttctgttgctccaatgaacc tagcaacccaaccattatccatctaaccacaacaaaaaaacgcttcatcagaaaaaaaactttgtatatgatattttttatatctttgtcatcaaatatatgaaacgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatctacccccccccgttaatattatttaacaaaaacatctataggcatagctgccttttcgtgtggcagagcattggagcagggaaccattgcgttacgacgtactggagattcgtacgccctgacacaaagtcagtagaaaacagtccggtattggccgaatgccagaaaacatcgggtgaaacgcgggcgatttcaggccttgcgagccgacgttgcgttgccttccgctggtcttccgttccatccaaccgaagttccgttgaacccaacgaaacttgcattagaaagaacgaatcttgttcaaacatctcccaaacacgcgttgtatcgtcccgaagttctgttgaacgcaacgagccacgcgtacgattatatggaggcgtcgtgggtgagaacgaatgttctgttgctccaatgaacc Subject: tfor_TF3104_TF3105|outer membrane protein, TonB dependent receptor:hypothetical protein|POSITIVE:POSITIVE|[3337511,3338207]|697 HSP 1 e-value: 1.0E-101 bit: 369.0 Len: 194 Query Start:61 Query End:254 Subject Strand: NEGATIVE Subject Start: 182 Subject End: 375 ............................................................tttgtatatgatattttttatatctttgtcatcaaatatatgaaacgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatcta................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................tttgtatatgattttttttatatctttgtcatcaaatatatgaaatgaccaagggcgtcaatctcataaaaacgagacatgaaagagaagaagacaaactttaatatcttgatgaacaatattataaaaagtgttcattctcttcgtgtgcactattctgaaggaaagaaagagagcttgccatcaattatcta................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-25 bit: 119.0 Len: 72 Query Start:264 Query End:335 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 170 .......................................................................................................................................................................................................................................................................gttaatattatttaacaaaaacatctataggcatagctgccttttcgtgtggcagagcattggagcagggaa.................................................................................................................................................................................................................................................................................................................................................. .......................................................................................................................................................................................................................................................................gttaatattatttaacaaaaacatctataggcgtagctgccttttcgtgtggcagagcatcggagcacggaa.................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGCAACCCAACCAUUAUCCAUCUAACCACAACAAAAAAACGCUUCAUCAGAAAAAAAACUUUGUAUAUGAUAUUUUUUAUAUCUUUGUCAUCAAAUAUAUGAAACGACCAAGGGCGUCAAUCUCAUAAAAACGAGACAUGAAAGAGAAGAAGACAAACUUUAAUAUCUUGAUGAACAAUAUUAUAAAAAGUGUUCAUUCUCUUCGUGUGCACUAUUCUGAAGGAAAGAAAGAGAGCUUGCCAUCAAUUAUCUACCCCCCCCCGUUAAUAUUAUUUAACAAAAACAUCUAUAGGCAUAGCUGCCUUUUCGUGUGGCAGAGCAUUGGAGCAGGGAACCAUUGCGUUACGACGUACUGGAGAUUCGUACGCCCUGACACAAAGUCAGUAGAAAACAGUCCGGUAUUGGCCGAAUGCCAGAAAACAUCGGGUGAAACGCGGGCGAUUUCAGGCCUUGCGAGCCGACGUUGCGUUGCCUUCCGCUGGUCUUCCGUUCCAUCCAACCGAAGUUCCGUUGAACCCAACGAAACUUGCAUUAGAAAGAACGAAUCUUGUUCAAACAUCUCCCAAACACGCGUUGUAUCGUCCCGAAGUUCUGUUGAACGCAACGAGCCACGCGUACGAUUAUAUGGAGGCGUCGUGGGUGAGAACGAAUGUUCUGUUGCUCCAAUGAACC .((((((..............(((((...............(((((.((((((........((((.(((((....((((((((.((((....)))).)))))))).((((....).)))....)))))...)))).(((((((.((((((((.((......((((((..((.....))))))))......)).))).))))))))))))......)))))).(((..........(((((((.....................(((((......)))))....((((....(((((....)))))....)))))))).)))..((((((.((((((((..(((..((((((((.((..(..(((((.((((((((.....)))))..((((...(((((((.(((.((((.((........)))))).))).)).)))))..)))).)))..)))))..)..)).)))))))..)..))))))).)))))))))))))....)))))..(((((....))))).........))))).((((((....((((((.....((.((((...((((.((..(((((.(((..((((.((((....))))))))..)).).)))))......)).))))..)))).)))))))).)))))))))))).......... (-176.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGUUCAUUGGAGCAACAGAACAUUCGUUCUCACCCACGACGCCUCCAUAUAAUCGUACGCGUGGCUCGUUGCGUUCAACAGAACUUCGGGACGAUACAACGCGUGUUUGGGAGAUGUUUGAACAAGAUUCGUUCUUUCUAAUGCAAGUUUCGUUGGGUUCAACGGAACUUCGGUUGGAUGGAACGGAAGACCAGCGGAAGGCAACGCAACGUCGGCUCGCAAGGCCUGAAAUCGCCCGCGUUUCACCCGAUGUUUUCUGGCAUUCGGCCAAUACCGGACUGUUUUCUACUGACUUUGUGUCAGGGCGUACGAAUCUCCAGUACGUCGUAACGCAAUGGUUCCCUGCUCCAAUGCUCUGCCACACGAAAAGGCAGCUAUGCCUAUAGAUGUUUUUGUUAAAUAAUAUUAACGGGGGGGGGUAGAUAAUUGAUGGCAAGCUCUCUUUCUUUCCUUCAGAAUAGUGCACACGAAGAGAAUGAACACUUUUUAUAAUAUUGUUCAUCAAGAUAUUAAAGUUUGUCUUCUUCUCUUUCAUGUCUCGUUUUUAUGAGAUUGACGCCCUUGGUCGUUUCAUAUAUUUGAUGACAAAGAUAUAAAAAAUAUCAUAUACAAAGUUUUUUUUCUGAUGAAGCGUUUUUUUGUUGUGGUUAGAUGGAUAAUGGUUGGGUUGCUA (((.((((((((((..(((((....))))).......((((.((((....(((...(((((((..(((((.(((((....))))...).)))))..).)))))))))..)))).)))).((((....((((((((.((((((..(((((((((((....)))))))))))..)))))).))))))))....(((..(((((((.((.((((((((..(((..(((........))).)))......))))))))...((((.....))))....))...)))))))..)))...((((((.(.(((((((.........))))))).).))))))..))))..))))))))))....))).........(((((((..(((.....((((((((((((...(((((.(((((..((((((........((.((((((((.....((((.......((((((((.....((((((........))))))....))))))))...))))......)))))))).)).......(((.(((((((....)))))))))).))))))..)))))....)))))...)))))))))))).......((((((.((((((.....((((....)))).....))))))))))))............)))..))))))). (-201.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 478 490 443 211 153 tfor:TF2682|5end_N_utilization_substance_protein_A_2856308..2856538_POSITIVE 462 469 422 222 162 tfor:TF1664|5end_conserved_hypothetical_protein_1778761..1778991_POSITIVE 455 477 435 187 142 tfor:TF1069|5end_glucokinase_regulatory_protein,_sugar_phosphate_isomerase_domain_1138884..1139114_POSITIVE 450 464 422 222 185 tfor:TF0009|5end_transcriptional_regulator_3491..3721_POSITIVE 449 478 434 231 174 tfor:TF1782|5end_conserved_hypothetical_protein_1922003..1922233_POSITIVE 447 479 437 192 143 tfor:TF0099|5end_glycosyltransferase_of_PMT_family_109287..109517_POSITIVE 446 358 311 82 38 tfor:TF0746|5end_possible_DNA_polymerase_III_792261..792491_POSITIVE 441 497 451 213 160 tfor:TF2259|5end_transfer_region-related_protein,_TraK_2429577..2429807_POSITIVE 439 470 422 153 89 tfor:TF2148|5end_conserved_hypothetical_protein_2321756..2321986_POSITIVE 439 480 434 56 17 tfor:TF1296|5end_possible_DNA-binding_protein,_histone-like_family_1378432..1378662_POSITIVE 438 469 425 176 133 tfor:TF1683|5end_conserved_hypothetical_protein_1795787..1796017_POSITIVE 438 469 425 98 42 tfor:TF1257|5end_hypothetical_protein_1338118..1338348_POSITIVE 438 469 425 63 7 tfor:TF1256|5end_hypothetical_protein_1338083..1338313_POSITIVE 437 479 434 208 144 tfor:TF1250|5end_possible_cation_efflux_pump_1332324..1332554_POSITIVE 435 506 461 52 5 tfor:TF0496|5end_conserved_hypothetical_protein_522332..522562_POSITIVE 432 480 434 58 9 tfor:TF1178|5end_sigma-54_dependent_DNA-binding_response_regulator_1264693..1264923_POSITIVE 429 480 436 185 132 tfor:TF2835|5end_stationary-phase_survival_protein_SurE_3025113..3025343_POSITIVE 425 478 436 219 171 tfor:TF1801|5end_conserved_hypothetical_protein;_possible_TPR-repeat-containing_protein_1944213..1944443_POSITIVE 419 485 447 180 134 tfor:TF3141|5end_NADH:_ubiquinone_oxidoreductase,_subunit_A_3374667..3374897_POSITIVE 416 495 451 219 171 tfor:TF0970|5end_2-keto-3-deoxygluconate_kinase_1020396..1020626_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 510 469 425 109 52 tfor:TF1167|3end_hypothetical_protein_1248932..1249082_POSITIVE 462 469 422 136 76 tfor:TF1663|3end_ABC_transporter,_permease_component_1778755..1778905_POSITIVE 448 479 432 118 56 tfor:TF2640|3end_hypothetical_protein_2809533..2809683_POSITIVE 447 479 437 105 56 tfor:TF0098|3end_permease_109280..109430_POSITIVE 446 358 311 49 5 tfor:TF0744|3end_DNA_polymerase_III_subunit,_gamma/tau_792308..792458_POSITIVE 433 463 422 45 10 tfor:TF1908|3end_possible_phosphoglycerate_mutase_2063299..2063449_POSITIVE 432 480 434 58 9 tfor:TF1177|3end_conserved_hypothetical_protein;_possible_ribosomal_protein_S1_1264773..1264923_POSITIVE 422 480 434 148 103 tfor:TF1954|3end_long-chain-fatty-acid--CoA_ligase_2106940..2107090_POSITIVE 418 469 427 126 69 tfor:TF0624|3end_Xaa-Pro_dipeptidase_(aminopeptidase_P)_661015..661165_POSITIVE 416 480 435 67 7 tfor:TF1255|3end_conserved_hypothetical_protein_1338151..1338301_POSITIVE 407 490 445 139 82 tfor:TF3106|3end_hypothetical_protein_3338608..3338758_POSITIVE 402 490 442 131 90 tfor:TF2213|3end_glycyl-tRNA_synthetase_2386940..2387090_POSITIVE 401 468 424 70 8 tfor:TF3113|3end_hypothetical_protein_3349706..3349856_POSITIVE 399 499 454 140 68 tfor:TF0429|3end_ABC_transporter,_ATP-binding_protein_452227..452377_POSITIVE 396 480 435 151 106 tfor:TF2454|3end_D-alanyl-D-alanine_dipeptidase_2632025..2632175_POSITIVE 396 470 423 143 105 tfor:TF1612|3end_conserved_hypothetical_protein_1729866..1730016_POSITIVE 393 470 422 147 102 tfor:TF2548|3end_30S_ribosomal_protein_S12_2731704..2731854_POSITIVE 393 464 425 149 110 tfor:TF1681|3end_dTDP-4-keto-L-rhamnose_reductase_1795844..1795994_POSITIVE 391 490 448 38 5 tfor:TF1474|3end_6-phosphogluconolactonase_1568123..1568273_POSITIVE 387 470 425 126 72 tfor:TF3060|3end_conserved_hypothetical_protein_3285130..3285280_POSITIVE