Origin IGS: taaagccctgcgggtgtttgattcgtttgaaacgcaccgaaccatgggcatgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacatcccccccagccccccttcaaaaaggggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcagtattcagccaacaattcaacaactaaacaactaaacatccaaagaaggcacaagggctgagagcctgatatcatttaatggtggatggtgcactgtcagaggatatacacatcgaatccatcttttttggcaaaacatcgatggaaaatcatttattttttttgaaataaacatcttctacgtttttttacatacaagcgcacgaacttttcagggactgcgctttatttttgcctaaaaaatatatatcgggct .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agcccgatatatattttttaggcaaaaataaagcgcagtccctgaaaagttcgtgcgcttgtatgtaaaaaaacgtagaagatgtttatttcaaaaaaaataaatgattttccatcgatgttttgccaaaaaagatggattcgatgtgtatatcctctgacagtgcaccatccaccattaaatgatatcaggctctcagcccttgtgccttctttggatgtttagttgtttagttgttgaattgttggctgaatactgaatgctgacggctgaccgcactgcattccccctttgaagggataacatcccccctttgcttcgctctttcccccctttttgaaggggggctgggggggatgttcctctgcgttcggataccgtgtaccatgcataacaattaacaattaatttgtcattcagagcgaagcgaagaatctcttttcttccccccgcgggattcctcacggtgttcggaatgacaaagggggttatttgcgtccatttgcgtcatctgcgttcggataccgtgtaccacgcataacaattgacaattgaccattaacaattaatttgtcatgcccatggttcggtgcgtttcaaacgaatcaaacacccgcagggcttta Mask Tandem Repeat Region ================================================ taaagccctgcgggtgtttgattcgtttgaaacgcaccgaaccatgggcatgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacatcccccccagccccccttcaaaaaggggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcagtattcagccaacaattcaacaactaaacaactaaacatccaaagaaggcacaagggctgagagcctgatatcatttaatggtggatggtgcactgtcagaggatatacacatcgaatccatcttttttggcaaaacatcgatggaaaatcatttattttttttgaaataaacatcttctacgtttttttacatacaagcgcacgaacttttcagggactgcgctttatttttgcctaaaaaatatatatcgggct Find is-nt database================================================ Query_seq: TF0603:TF0604|TF0603:TF0604:glycosyltransferase:hypothetical protein:->->:634899..635524 626 taaagccctgcgggtgtttgattcgtttgaaacgcaccgaaccatgggcatgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacatcccccccagccccccttcaaaaaggggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcagtattcagccaacaattcaacaactaaacaactaaacatccaaagaaggcacaagggctgagagcctgatatcatttaatggtggatggtgcactgtcagaggatatacacatcgaatccatcttttttggcaaaacatcgatggaaaatcatttattttttttgaaataaacatcttctacgtttttttacatacaagcgcacgaacttttcagggactgcgctttatttttgcctaaaaaatatatatcgggct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0603:TF0604|TF0603:TF0604:glycosyltransferase:hypothetical protein:->->:634899..635524 626 taaagccctgcgggtgtttgattcgtttgaaacgcaccgaaccatgggcatgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacatcccccccagccccccttcaaaaaggggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcagtattcagccaacaattcaacaactaaacaactaaacatccaaagaaggcacaagggctgagagcctgatatcatttaatggtggatggtgcactgtcagaggatatacacatcgaatccatcttttttggcaaaacatcgatggaaaatcatttattttttttgaaataaacatcttctacgtttttttacatacaagcgcacgaacttttcagggactgcgctttatttttgcctaaaaaatatatatcgggct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0603:TF0604|TF0603:TF0604:glycosyltransferase:hypothetical protein:->->:634899..635524 626 taaagccctgcgggtgtttgattcgtttgaaacgcaccgaaccatgggcatgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacatcccccccagccccccttcaaaaaggggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcagtattcagccaacaattcaacaactaaacaactaaacatccaaagaaggcacaagggctgagagcctgatatcatttaatggtggatggtgcactgtcagaggatatacacatcgaatccatcttttttggcaaaacatcgatggaaaatcatttattttttttgaaataaacatcttctacgtttttttacatacaagcgcacgaacttttcagggactgcgctttatttttgcctaaaaaatatatatcgggct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaagccctgcgggtgtttgattcgtttgaaacgcaccgaaccatgggcatgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacatcccccccagccccccttcaaaaaggggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcagtattcagccaacaattcaacaactaaacaactaaacatccaaagaaggcacaagggctgagagcctgatatcatttaatggtggatggtgcactgtcagaggatatacacatcgaatccatcttttttggcaaaacatcgatggaaaatcatttattttttttgaaataaacatcttctacgtttttttacatacaagcgcacgaacttttcagggactgcgctttatttttgcctaaaaaatatatatcgggct Predict ORF larger than 30AA ================================================ Protein_Len: 50 Strand: + Start: 62 End: 211 ............................................................. M L M V N C Q L L C V V H G I R T Q M T Q M D A N N P L C H S E H R E E S R G G K K R D S S L R S E ............................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 55 Strand: + Start: 230 End: 394 ..................................................................................................................................................................................................................................... M L C M V H G I R T Q R N I P P S P P S K R G E R A K Q R G D V I P S K G E C S A V S R Q H S V F S Q Q F N N ........................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 223 End: 402 .............................................................................................................................................................................................................................. M L I V M H G T R Y P N A E E H P P Q P P F K K G G K S E A K G G C Y P F K G G M Q C G Q P S A F S I Q P T I Q Q L N N ................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 135 End: 428 ...................................................................................................................................... M T P F V I P N T V R N P A G G R K E I L R F A L N D K L I V N C Y A W Y T V S E R R G T S P P A P L Q K G G K E R S K ...................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 449 End: 538 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M V D G A L S E D I H I E S I F F G K T S M E N H L F F L K ........................................................................................ Protein_Len: 57 Strand: + Start: 436 End: 606 ................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I S F N G G W C T V R G Y T H R I H L F W Q N I D G K S F I F F E I N I F Y V F L H T S A R T F Q G L R F I F A .................... Protein_Len: 47 Strand: - Start: 405 End: 545 .................................................................................................................................................................................................................................................................................................................................................................................................................... V D L S P V L A S L R I D N L P P H H V T L P Y V C R I W R K Q C F M S P F D N I K K S I F M ................................................................................. Protein_Len: 43 Strand: - Start: 229 End: 357 .................................................................................................................................................................................................................................... N N H M T C P I R V C L F M G G L G G E F L P S L A F C L P S T I G E F P S H L A T M ............................................................................................................................................................................................................................................................................. Protein_Len: 45 Strand: - Start: 89 End: 223 ........................................................................................ A H Y V T D S R L H R L H V C I V G K T M G F V T L F G A P P L F S I R R K A R F S L N M ................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 46 Strand: - Start: 75 End: 212 .......................................................................... N D I T I R P V R Y G F A S S A F P R L Y G G K D N R V G H P I G R P S S F L N K A E S Q M .............................................................................................................................................................................................................................................................................................................................................................................................................................. taaagccctgcgggtgtttgattcgtttgaaacgcaccgaaccatgggcatgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacatcccccccagccccccttcaaaaaggggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcagtattcagccaacaattcaacaactaaacaactaaacatccaaagaaggcacaagggctgagagcctgatatcatttaatggtggatggtgcactgtcagaggatatacacatcgaatccatcttttttggcaaaacatcgatggaaaatcatttattttttttgaaataaacatcttctacgtttttttacatacaagcgcacgaacttttcagggactgcgctttatttttgcctaaaaaatatatatcgggct Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaagccctgcgggtgtttgattcgtttgaaacgcaccgaaccatgggcatgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacatcccccccagccccccttcaaaaaggggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcagtattcagccaacaattcaacaactaaacaactaaacatccaaagaaggcacaagggctgagagcctgatatcatttaatggtggatggtgcactgtcagaggatatacacatcgaatccatcttttttggcaaaacatcgatggaaaatcatttattttttttgaaataaacatcttctacgtttttttacatacaagcgcacgaacttttcagggactgcgctttatttttgcctaaaaaatatatatcgggct Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 45 HP_score: -3.0 Tail_Score: -3.1355 Start: 179 End: 200 Full_Region: GAGGAATCCCGCGGG GGGAAGAA AAGAGA TTCTTCGC TTCGCTCTGAATGAC ..................................................................................................................................................................................GGGAAGAAAAGAGATTCTTCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TF0603:TF0604|TF0603:TF0604:glycosyltransferase:hypothetical protein:->->:634899..635524 626 taaagccctgcgggtgtttgattcgtttgaaacgcaccgaaccatgggcatgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacatcccccccagccccccttcaaaaaggggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcagtattcagccaacaattcaacaactaaacaactaaacatccaaagaaggcacaagggctgagagcctgatatcatttaatggtggatggtgcactgtcagaggatatacacatcgaatccatcttttttggcaaaacatcgatggaaaatcatttattttttttgaaataaacatcttctacgtttttttacatacaagcgcacgaacttttcagggactgcgctttatttttgcctaaaaaatatatatcgggct Intra-Species Hit: Count: 14 Min: 1 Max: 626 Len: 626 Subject: tfor_TF0603_TF0604|glycosyltransferase:hypothetical protein|POSITIVE:POSITIVE|[634899,635524]|626 HSP 1 e-value: 1.0E-166 bit: 587.0 Len: 341 Query Start:286 Query End:626 Subject Strand: POSITIVE Subject Start: 286 Subject End: 626 .............................................................................................................................................................................................................................................................................................ttcaaaaaggggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcagtattcagccaacaattcaacaactaaacaactaaacatccaaagaaggcacaagggctgagagcctgatatcatttaatggtggatggtgcactgtcagaggatatacacatcgaatccatcttttttggcaaaacatcgatggaaaatcatttannnnnnnngaaataaacatcttctacgnnnnnnnacatacaagcgcacgaacttttcagggactgcgctttatttttgcctaaaaaatatatatcgggct .............................................................................................................................................................................................................................................................................................ttcaaaaaggggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcagtattcagccaacaattcaacaactaaacaactaaacatccaaagaaggcacaagggctgagagcctgatatcatttaatggtggatggtgcactgtcagaggatatacacatcgaatccatcttttttggcaaaacatcgatggaaaatcatttattttttttgaaataaacatcttctacgtttttttacatacaagcgcacgaacttttcagggactgcgctttatttttgcctaaaaaatatatatcgggct HSP 2 e-value: 1.0E-151 bit: 535.0 Len: 270 Query Start:1 Query End:270 Subject Strand: POSITIVE Subject Start: 1 Subject End: 270 taaagccctgcgggtgtttgattcgtttgaaacgcaccgaaccatgggcatgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... taaagccctgcgggtgtttgattcgtttgaaacgcaccgaaccatgggcatgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2922_TF2923|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[3121599,3122307]|709 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 138 Query Start:111 Query End:248 Subject Strand: NEGATIVE Subject Start: 390 Subject End: 528 ..............................................................................................................cgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgctt-cgctctgaatgacaaattaattgttaattgttatgcatggtacacg.......................................................................................................................................................................................................................................................................................................................................................................................... ..............................................................................................................cgcaaatgacgcgaatggacgcaaataaccccctttgtcattccgaacgtagtgaggaatcccgtggggaagaggaaagagattcttcgcttacgctctgaatgacaaattaatggttaattgttatgcgtggtacacg.......................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-12 bit: 73.8 Len: 49 Query Start:185 Query End:233 Subject Strand: NEGATIVE Subject Start: 570 Subject End: 618 ........................................................................................................................................................................................aaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................aaaagagattcatcgcttcgcgctgaatgacaaattaatggttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1838_TF1839|tRNA/rRNA methyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1988806,1989486]|681 HSP 1 e-value: 3.0E-35 bit: 151.0 Len: 131 Query Start:103 Query End:233 Subject Strand: POSITIVE Subject Start: 66 Subject End: 196 ......................................................................................................tatccgaacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgctt-cgctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................tatccgaacgcaaatttcgcaaatgg-cgcgaataaccgcctttgtcattccgaacaccgtgaggaatcccgcggagtaaaagaaagagattcttcgcttacgctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-9 bit: 63.9 Len: 52 Query Start:50 Query End:101 Subject Strand: POSITIVE Subject Start: 174 Subject End: 225 .................................................atgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................atgacaaattaattgttaattgtcaatggttaattgttatgccgggtacacg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2816_TF2817|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3007245,3007497]|253 HSP 1 e-value: 5.0E-34 bit: 147.0 Len: 125 Query Start:109 Query End:233 Subject Strand: POSITIVE Subject Start: 72 Subject End: 197 ............................................................................................................aacgcagatgacgcaaatggacgcaaataaccccctttgtcattccgaacaccgtgaggaatcccgcggggggaa-gaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................aacgcaaataacgcgaatgaaagcaaataaccccctttgtcattccgaacacagtgaggaatcccgcgaggaaaaggaaaggagattcttcgctttgctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-13 bit: 79.8 Len: 52 Query Start:50 Query End:101 Subject Strand: POSITIVE Subject Start: 175 Subject End: 226 .................................................atgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................atgacaaattaattgttaattgtcaatggtcaattattatgcgtggtacacg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 2.0E-6 bit: 56.0 Len: 32 Query Start:60 Query End:91 Subject Strand: POSITIVE Subject Start: 20 Subject End: 51 ...........................................................aattgttaatggtcaattgtcaattgttatgc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...........................................................aattgttaatggtcaattgttaattgttatgc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 3.0E-32 bit: 141.0 Len: 126 Query Start:145 Query End:270 Subject Strand: NEGATIVE Subject Start: 495 Subject End: 627 ................................................................................................................................................ttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaatt-------aattgttaattgttatgcatggtacacggtatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................ttgtcattccgaacaccgtgaggaatctcgcggggtaaagggaagagattcatcgcttcgctctgaatgacaaattaatggtcaattgttaattgttatgcgtggtacacggtatccgagcgctgaggaacat.................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 81 Query Start:291 Query End:371 Subject Strand: NEGATIVE Subject Start: 397 Subject End: 477 ..................................................................................................................................................................................................................................................................................................aaaggggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcag............................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................aaagggaggaaagagcgtagcgaaagggggatgtcatcctttcaaagggggaatgcagtgcagtcagccgtcagcattcag............................................................................................................................................................................................................................................................... HSP 3 e-value: 3.0E-20 bit: 101.0 Len: 83 Query Start:295 Query End:377 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 83 ......................................................................................................................................................................................................................................................................................................gggggaaagagcgaagcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagcattcagtattca......................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................ggggggaagagcggagcgaaagggggatgtcatcctttcaaagggggaatgcagtgcagtcagccgtcagcattcagcattca......................................................................................................................................................................................................................................................... HSP 4 e-value: 7.0E-18 bit: 93.7 Len: 55 Query Start:60 Query End:114 Subject Strand: NEGATIVE Subject Start: 707 Subject End: 761 ...........................................................aattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgca................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...........................................................aattgttaatggttaattgtcaattgttatgcgtggtacacggtatccgagcgca................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 5 e-value: 1.0E-16 bit: 89.7 Len: 49 Query Start:185 Query End:233 Subject Strand: NEGATIVE Subject Start: 162 Subject End: 210 ........................................................................................................................................................................................aaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................aaaagagattcttcgcttcgctctgaatgacaaattaatggttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... HSP 6 e-value: 3.0E-14 bit: 81.8 Len: 45 Query Start:65 Query End:109 Subject Strand: NEGATIVE Subject Start: 509 Subject End: 553 ................................................................ttaatggtcaattgtcaattgttatgcgtggtacacggtatccga..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................ttaatggtcaattgttaattgttatgcgtggtacacggtatccga..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 7 e-value: 3.0E-11 bit: 71.9 Len: 52 Query Start:58 Query End:109 Subject Strand: NEGATIVE Subject Start: 118 Subject End: 169 .........................................................ttaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccga..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................ttaattgtcaattgttaattgtcaattgttatgcgtgatacacggtatccga..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 8 e-value: 6.0E-9 bit: 63.9 Len: 52 Query Start:219 Query End:270 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 155 ..........................................................................................................................................................................................................................ttaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................ttaattgtcaattgttatgcgtgatacacggtatccgagcgctgaggaacat.................................................................................................................................................................................................................................................................................................................................................................... HSP 9 e-value: 2.0E-8 bit: 61.9 Len: 43 Query Start:219 Query End:261 Subject Strand: NEGATIVE Subject Start: 707 Subject End: 749 ..........................................................................................................................................................................................................................ttaattgttaattgttatgcatggtacacggtatccgaacgca............................................................................................................................................................................................................................................................................................................................................................................. ..........................................................................................................................................................................................................................ttaattgtcaattgttatgcgtggtacacggtatccgagcgca............................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2823_TF2824|TPR-containing protein:nucleoside-transporting protein nupG|POSITIVE:POSITIVE|[3014398,3014840]|443 HSP 1 e-value: 3.0E-26 bit: 121.0 Len: 93 Query Start:141 Query End:233 Subject Strand: POSITIVE Subject Start: 101 Subject End: 193 ............................................................................................................................................ccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................ccctttgtcattccgaacgcagtgaggaatctcgcggggaaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-13 bit: 77.8 Len: 67 Query Start:50 Query End:116 Subject Strand: POSITIVE Subject Start: 171 Subject End: 237 .................................................atgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................atgacaaattaatggttaattgtcaggtgttaattgttatgccgggtacacggtatccgaacgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 7.0E-12 bit: 73.8 Len: 48 Query Start:301 Query End:348 Subject Strand: POSITIVE Subject Start: 271 Subject End: 319 ............................................................................................................................................................................................................................................................................................................aagagcgaagcaaaggggggatgttatcccttc-aaagggggaatgcag...................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................aagagcgaagcgaaggggggatgttatcccttcaaaagggggaatgcag...................................................................................................................................................................................................................................................................................... HSP 4 e-value: 1.0E-10 bit: 69.9 Len: 47 Query Start:224 Query End:270 Subject Strand: POSITIVE Subject Start: 198 Subject End: 244 ...............................................................................................................................................................................................................................tgttaattgttatgcatggtacacggtatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................tgttaattgttatgccgggtacacggtatccgaacgcagagggacat.................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2921_TF2922|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[3118851,3119261]|411 HSP 1 e-value: 8.0E-24 bit: 113.0 Len: 108 Query Start:141 Query End:248 Subject Strand: NEGATIVE Subject Start: 68 Subject End: 175 ............................................................................................................................................ccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgctt-cgctctgaatgacaaattaattgttaattgttatgcatggtacacg.......................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................ccctttgtcattccgaacgtagtgaggaatcccgtggggaaaggaaaa-agattcttcgcttacgctctgaatgacaaattaatggttaattgttatgcgtggtacacg.......................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-18 bit: 95.6 Len: 103 Query Start:141 Query End:243 Subject Strand: NEGATIVE Subject Start: 245 Subject End: 348 ............................................................................................................................................ccctttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgctt-cgctctgaatgacaaattaattgttaattgttatgcatggt............................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................ccctttgtcattccgaacgtagtgaggaatctcacggggaagagggaagagattcttcgcttacgctctgaatgacaaattaatggttaattgttatgcgtggt............................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1848_TF1850|conserved hypothetical protein:Na+/H+-exchanging protein|POSITIVE:POSITIVE|[1998005,1998681]|677 HSP 1 e-value: 8.0E-24 bit: 113.0 Len: 76 Query Start:291 Query End:366 Subject Strand: POSITIVE Subject Start: 259 Subject End: 335 ..................................................................................................................................................................................................................................................................................................aaaggggggaaagagcgaa-gcaaaggggggatgttatcccttcaaagggggaatgcagtgcggtcagccgtcagca.................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................aaaggggggaaagagcgaaagcgaaggggggatgttatcccttcaaagggggaatgcggtgcggtcagccatcagca.................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-21 bit: 103.0 Len: 87 Query Start:144 Query End:230 Subject Strand: POSITIVE Subject Start: 455 Subject End: 542 ...............................................................................................................................................tttgtcattccgaacaccgtgaggaatcccgcggggggaagaaaagagattcttcgct-tcgctctgaatgacaaattaattgttaat............................................................................................................................................................................................................................................................................................................................................................................................................ ...............................................................................................................................................tttgtcattccgaacaccgtgaggaatctcgcaggggaaagggaagagattcttcgctgacgctctgaatgacaaattaatggttaat............................................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 4.0E-13 bit: 77.8 Len: 67 Query Start:50 Query End:116 Subject Strand: POSITIVE Subject Start: 523 Subject End: 589 .................................................atgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................atgacaaattaatggttaatggtcaatggttaattgttatgccgggtacacggaatccgagcgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 4 e-value: 4.0E-10 bit: 67.9 Len: 46 Query Start:225 Query End:270 Subject Strand: POSITIVE Subject Start: 197 Subject End: 242 ................................................................................................................................................................................................................................gttaattgttatgcatggtacacggtatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................gttaattgttatgccgggtacacggaatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... HSP 5 e-value: 2.0E-9 bit: 65.9 Len: 57 Query Start:60 Query End:116 Subject Strand: POSITIVE Subject Start: 179 Subject End: 235 ...........................................................aattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ...........................................................aattgttaattgtcaatggttaattgttatgccgggtacacggaatccgaacgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF1578_TF1579|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1686477,1687028]|552 HSP 1 e-value: 2.0E-21 bit: 105.0 Len: 91 Query Start:145 Query End:235 Subject Strand: NEGATIVE Subject Start: 29 Subject End: 121 ................................................................................................................................................ttgtcattccgaacaccgtgaggaatcccgcggggggaag-aaaagagattcttcgctt-cgctctgaatgacaaattaattgttaattgtta....................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................ttgtcattccgaacgcagtgaggaatctcgcggggtaaaggaaaagagattcttcgcttacgctctgaatgacaaattaatggttaattgtta....................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-20 bit: 101.0 Len: 67 Query Start:50 Query End:116 Subject Strand: NEGATIVE Subject Start: 387 Subject End: 453 .................................................atgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................atgacatattaattgttaatggttaattgttaattgttatgcgtggtacacggtatccgagcgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 5.0E-19 bit: 97.6 Len: 72 Query Start:295 Query End:366 Subject Strand: NEGATIVE Subject Start: 285 Subject End: 357 ......................................................................................................................................................................................................................................................................................................gggggaaagagcgaagcaaaggggggatgttatcccttcaaag-ggggaatgcagtgcggtcagccgtcagca.................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................ggggggaagagcgaagcgaaggggggatgttaccccttcaaaggggggaatgcagtgcggtaagccgtcagca.................................................................................................................................................................................................................................................................... HSP 4 e-value: 3.0E-14 bit: 81.8 Len: 91 Query Start:145 Query End:235 Subject Strand: NEGATIVE Subject Start: 429 Subject End: 521 ................................................................................................................................................ttgtcattccgaacaccgtgaggaatcccgcggggggaa-gaaaagagattcttcgctt-cgctctgaatgacaaattaattgttaattgtta....................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................ttgtcattccgaacgcagtgaggaatctcgcggggtaaaagaaaagagattcatcgctcacgctctgaatgacatattaattgttaatggtta....................................................................................................................................................................................................................................................................................................................................................................................................... HSP 5 e-value: 1.0E-13 bit: 79.8 Len: 52 Query Start:219 Query End:270 Subject Strand: NEGATIVE Subject Start: 380 Subject End: 431 ..........................................................................................................................................................................................................................ttaattgttaattgttatgcatggtacacggtatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................ttaattgttaattgttatgcgtggtacacggtatccgagcgcagagggacat.................................................................................................................................................................................................................................................................................................................................................................... HSP 6 e-value: 4.0E-7 bit: 58.0 Len: 37 Query Start:65 Query End:101 Subject Strand: NEGATIVE Subject Start: 9 Subject End: 45 ................................................................ttaatggtcaattgtcaattgttatgcgtggtacacg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................ttaatggttaattgttaattgttatgcgtggtacacg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2500_TF2501|ABC transporter, ATP-binding protein:DNA mismatch repair protein|POSITIVE:POSITIVE|[2675363,2676419]|1057 HSP 1 e-value: 7.0E-18 bit: 93.7 Len: 67 Query Start:50 Query End:116 Subject Strand: POSITIVE Subject Start: 743 Subject End: 809 .................................................atgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................atgacatattaatggttaattgtcaattgtcaattgttatgccgggtacacggtatccgaacgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 4.0E-10 bit: 67.9 Len: 50 Query Start:221 Query End:270 Subject Strand: POSITIVE Subject Start: 767 Subject End: 816 ............................................................................................................................................................................................................................aattgttaattgttatgcatggtacacggtatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................aattgtcaattgttatgccgggtacacggtatccgaacgcagagggacat.................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-8 bit: 61.9 Len: 47 Query Start:295 Query End:341 Subject Strand: POSITIVE Subject Start: 831 Subject End: 876 ......................................................................................................................................................................................................................................................................................................gggggaaagagcgaagcaaaggggggatgttatcccttcaaaggggg............................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................................................................................................................ggggggaagagcgaagcgaagggg-gatgttatcccttcaaaggggg............................................................................................................................................................................................................................................................................................. HSP 4 e-value: 1.0E-7 bit: 60.0 Len: 45 Query Start:189 Query End:233 Subject Strand: POSITIVE Subject Start: 720 Subject End: 765 ............................................................................................................................................................................................gagattcttcgctt-cgctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................gagattcttcgcttacgctctgaatgacatattaatggttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2817_TF2818|hypothetical protein:acetylornithine aminotransferase|POSITIVE:POSITIVE|[3007687,3007878]|192 HSP 1 e-value: 4.0E-16 bit: 87.7 Len: 48 Query Start:186 Query End:233 Subject Strand: POSITIVE Subject Start: 7 Subject End: 54 .........................................................................................................................................................................................aaagagattcttcgcttcgctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................aaagagattcttcgcttcgctctgaatgacaaattaatggttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-15 bit: 85.7 Len: 67 Query Start:50 Query End:116 Subject Strand: POSITIVE Subject Start: 32 Subject End: 98 .................................................atgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................atgacaaattaatggttaattgtcaatggttaattgttatgccgggtacacggtatccgaacgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 2.0E-12 bit: 75.8 Len: 46 Query Start:225 Query End:270 Subject Strand: POSITIVE Subject Start: 60 Subject End: 105 ................................................................................................................................................................................................................................gttaattgttatgcatggtacacggtatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................gttaattgttatgccgggtacacggtatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1483_TF1484|glycosyltransferase family protein:penicillin binding protein|POSITIVE:POSITIVE|[1578886,1579698]|813 HSP 1 e-value: 4.0E-16 bit: 87.7 Len: 91 Query Start:143 Query End:233 Subject Strand: POSITIVE Subject Start: 223 Subject End: 314 ..............................................................................................................................................ctttgtcattccgaacaccgtgaggaatcccgcggggggaa-gaaaagagattcttcgcttcgctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................................................................................................................ctttgtcattccgaacgtagtgaggaatcccgccccggtaaagggaagagattcttcgcttcgctctgaatgacaaattaatggttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-13 bit: 77.8 Len: 47 Query Start:295 Query End:341 Subject Strand: POSITIVE Subject Start: 91 Subject End: 137 ......................................................................................................................................................................................................................................................................................................gggggaaagagcgaagcaaaggggggatgttatcccttcaaaggggg............................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................................................................................................................ggggggaagagcgaagcgaaggggggatgttatcccttcaaaggggg............................................................................................................................................................................................................................................................................................. HSP 3 e-value: 4.0E-13 bit: 77.8 Len: 67 Query Start:50 Query End:116 Subject Strand: POSITIVE Subject Start: 292 Subject End: 358 .................................................atgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................atgacaaattaatggttaattgtcaattgttaattgttatgccgggtacatggtatccgaccgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 4 e-value: 4.0E-10 bit: 67.9 Len: 50 Query Start:221 Query End:270 Subject Strand: POSITIVE Subject Start: 18 Subject End: 67 ............................................................................................................................................................................................................................aattgttaattgttatgcatggtacacggtatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................aattgttaattgttatgccgggtacatggtatccgaccgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... HSP 5 e-value: 4.0E-10 bit: 67.9 Len: 50 Query Start:221 Query End:270 Subject Strand: POSITIVE Subject Start: 316 Subject End: 365 ............................................................................................................................................................................................................................aattgttaattgttatgcatggtacacggtatccgaacgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................aattgttaattgttatgccgggtacatggtatccgaccgcagaggaacat.................................................................................................................................................................................................................................................................................................................................................................... HSP 6 e-value: 6.0E-9 bit: 63.9 Len: 60 Query Start:57 Query End:116 Subject Strand: POSITIVE Subject Start: 1 Subject End: 60 ........................................................attaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccgaacgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................attaatggttaattgtcaattgttaattgttatgccgggtacatggtatccgaccgcaga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2996_TF2997|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3211182,3211547]|366 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 52 Query Start:50 Query End:101 Subject Strand: NEGATIVE Subject Start: 228 Subject End: 279 .................................................atgacaaattaattgttaatggtcaattgtcaattgttatgcgtggtacacg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................atgacaaattaattgttaattgtcaatggttaattgttatgcgtggtacacg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 4.0E-13 bit: 77.8 Len: 47 Query Start:55 Query End:101 Subject Strand: NEGATIVE Subject Start: 171 Subject End: 217 ......................................................aaattaattgttaatggtcaattgtcaattgttatgcgtggtacacg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................aaattaattgttaattgtcaattgtcaatggttatgcgtggtacacg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:204 Query End:233 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 286 ...........................................................................................................................................................................................................gctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... ...........................................................................................................................................................................................................gctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0684_TF0685|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[730625,730991]|367 HSP 1 e-value: 6.0E-9 bit: 63.9 Len: 52 Query Start:58 Query End:109 Subject Strand: NEGATIVE Subject Start: 288 Subject End: 339 .........................................................ttaattgttaatggtcaattgtcaattgttatgcgtggtacacggtatccga..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................ttaattgtcaatggttaattgtcaattgttatgtcgggtacacggtatccga..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-9 bit: 63.9 Len: 36 Query Start:198 Query End:233 Subject Strand: NEGATIVE Subject Start: 332 Subject End: 367 .....................................................................................................................................................................................................cgcttcgctctgaatgacaaattaattgttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................cgcttcgctctgaatgacaaattaatggttaattgt......................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAGCCCUGCGGGUGUUUGAUUCGUUUGAAACGCACCGAACCAUGGGCAUGACAAAUUAAUUGUUAAUGGUCAAUUGUCAAUUGUUAUGCGUGGUACACGGUAUCCGAACGCAGAUGACGCAAAUGGACGCAAAUAACCCCCUUUGUCAUUCCGAACACCGUGAGGAAUCCCGCGGGGGGAAGAAAAGAGAUUCUUCGCUUCGCUCUGAAUGACAAAUUAAUUGUUAAUUGUUAUGCAUGGUACACGGUAUCCGAACGCAGAGGAACAUCCCCCCCAGCCCCCCUUCAAAAAGGGGGGAAAGAGCGAAGCAAAGGGGGGAUGUUAUCCCUUCAAAGGGGGAAUGCAGUGCGGUCAGCCGUCAGCAUUCAGUAUUCAGCCAACAAUUCAACAACUAAACAACUAAACAUCCAAAGAAGGCACAAGGGCUGAGAGCCUGAUAUCAUUUAAUGGUGGAUGGUGCACUGUCAGAGGAUAUACACAUCGAAUCCAUCUUUUUUGGCAAAACAUCGAUGGAAAAUCAUUUAUUUUUUUUGAAAUAAACAUCUUCUACGUUUUUUUACAUACAAGCGCACGAACUUUUCAGGGACUGCGCUUUAUUUUUGCCUAAAAAAUAUAUAUCGGGCU ...(((((((((..((((((..(((((((...((.((((.(((((..(((((((((..((((((........))))))....))))))))))))))...))))...))....)))))))..))))))..))).........((((((((((((.((...((....))......((((((.((((((......)))))).)))))))).)))))))...(((.((((((((((((..((..(((((...))))).(((..(.....(((((((((((...((((((((....)))))))).....((...))...)))))))))))..((((....)))).((((((...((((....))))..)))))).)..))).)).))))))).))))).))).................)))))....))))))...((((((((((........(((((((.(((...((((....))))..))).....))))))).((((((((((((...((.(((((.((..((((((((....)))))))).)).))))))).............(((((((.(..((.....))..))))))))...))))))).)))))....)))))))))) (-206.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGCCCGAUAUAUAUUUUUUAGGCAAAAAUAAAGCGCAGUCCCUGAAAAGUUCGUGCGCUUGUAUGUAAAAAAACGUAGAAGAUGUUUAUUUCAAAAAAAAUAAAUGAUUUUCCAUCGAUGUUUUGCCAAAAAAGAUGGAUUCGAUGUGUAUAUCCUCUGACAGUGCACCAUCCACCAUUAAAUGAUAUCAGGCUCUCAGCCCUUGUGCCUUCUUUGGAUGUUUAGUUGUUUAGUUGUUGAAUUGUUGGCUGAAUACUGAAUGCUGACGGCUGACCGCACUGCAUUCCCCCUUUGAAGGGAUAACAUCCCCCCUUUGCUUCGCUCUUUCCCCCCUUUUUGAAGGGGGGCUGGGGGGGAUGUUCCUCUGCGUUCGGAUACCGUGUACCAUGCAUAACAAUUAACAAUUAAUUUGUCAUUCAGAGCGAAGCGAAGAAUCUCUUUUCUUCCCCCCGCGGGAUUCCUCACGGUGUUCGGAAUGACAAAGGGGGUUAUUUGCGUCCAUUUGCGUCAUCUGCGUUCGGAUACCGUGUACCACGCAUAACAAUUGACAAUUGACCAUUAACAAUUAAUUUGUCAUGCCCAUGGUUCGGUGCGUUUCAAACGAAUCAAACACCCGCAGGGCUUUA ((((.(((((...((((((.(((((((...(((((((....((....))....))))))).............((..((((((((((((((......)))))))).))))))...))...)))))))))))))(((((....(((((((((.((....))..))))).))))..))))).....))))).))))...((((((.(((........(((((.(((((((((.(((.(((.((((((..(.((....(((((((((((((..((..((((.......(((((((((..((((..(((((((((((..((...)).....((((((((....))))))))..))))))))))))))).....(((((((((((((..................((((.....)))).((((...(((..(.((((((......)))))).)..))).))))....)))))))))))))....))))))))).....))))..))....)))))...)))))))).....(((.....)))....)).)..))))))))).)))))))))))).....))).))..(((((((............)))))))......)))))))))... (-200.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 937 340 291 73 24 tfor:TF1167|5end_hypothetical_protein_1248559..1248789_POSITIVE 901 210 161 94 44 tfor:TF0470|5end_hypothetical_protein_487253..487483_POSITIVE 900 359 313 180 132 tfor:TF0471|5end_conserved_hypothetical_protein_487516..487746_POSITIVE 878 210 161 84 34 tfor:TF2994|5end_hypothetical_protein_3210605..3210835_POSITIVE 859 290 241 204 156 tfor:TF0685|5end_hypothetical_protein_730852..731082_POSITIVE 842 210 161 166 117 tfor:TF2668|5end_hypothetical_protein_2842471..2842701_POSITIVE 842 210 161 90 41 tfor:TF2667|5end_hypothetical_protein_2842395..2842625_POSITIVE 801 300 253 229 186 tfor:TF1168|5end_hypothetical_protein_1248755..1248985_POSITIVE 796 210 161 160 112 tfor:TF0017|5end_hypothetical_protein_10504..10734_POSITIVE 766 210 162 122 74 tfor:TF2653|5end_hypothetical_protein_2822093..2822323_POSITIVE 760 210 161 203 154 tfor:TF2669|5end_possible_Fe-S_oxidoreductase_2842971..2843201_POSITIVE 760 210 161 166 117 tfor:TF2665|5end_hypothetical_protein_2841973..2842203_POSITIVE 741 160 111 116 67 tfor:TF1579|5end_hypothetical_protein_1686889..1687119_POSITIVE 725 340 295 44 1 tfor:TF2350|5end_hypothetical_protein_2515063..2515293_POSITIVE 724 160 111 230 182 tfor:TF2996|5end_hypothetical_protein_3210802..3211032_POSITIVE 714 190 144 230 183 tfor:TF0018|5end_hypothetical_protein_11250..11480_POSITIVE 692 210 162 225 176 tfor:TF2922|5end_surface_antigen_BspA_3119122..3119352_POSITIVE 689 238 191 153 106 tfor:TF0469|5end_hypothetical_protein_486960..487190_POSITIVE 689 238 191 122 75 tfor:TF0468|5end_hypothetical_protein_486929..487159_POSITIVE 659 200 151 156 107 tfor:TF1592|5end_hypothetical_protein_1708325..1708555_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 974 379 331 92 44 tfor:TF0685|3end_hypothetical_protein_731132..731282_POSITIVE 900 359 313 102 54 tfor:TF0470|3end_hypothetical_protein_487518..487668_POSITIVE 852 348 305 45 1 tfor:TF1166|3end_ABC_transporter,_permease_component_1248603..1248753_POSITIVE 822 210 161 151 101 tfor:TF0017|3end_hypothetical_protein_11231..11381_POSITIVE 813 210 162 58 11 tfor:TF2997|3end_hypothetical_protein_3211664..3211814_POSITIVE 788 179 135 148 101 tfor:TF0366|3end_hypothetical_protein_383811..383961_POSITIVE 788 179 135 148 101 tfor:TF0362|3end_hypothetical_protein_380199..380349_POSITIVE 786 276 231 151 106 tfor:TF2639|3end_hypothetical_protein_2809333..2809483_POSITIVE 786 200 151 147 99 tfor:TF0016|3end_hypothetical_protein_10581..10731_POSITIVE 780 184 142 151 111 tfor:TF2166|3end_hypothetical_protein_2342362..2342512_POSITIVE 766 210 162 71 23 tfor:TF2652|3end_hypothetical_protein_2822122..2822272_POSITIVE 729 287 241 64 8 tfor:TF2651|3end_hypothetical_protein_2822014..2822164_POSITIVE 725 110 61 119 70 tfor:TF2996|3end_hypothetical_protein_3211121..3211271_POSITIVE 725 179 138 148 110 tfor:TF2173|3end_hypothetical_protein_2346063..2346213_POSITIVE 725 179 138 148 110 tfor:TF0346|3end_hypothetical_protein_367316..367466_POSITIVE 709 140 91 102 45 tfor:TF1761|3end_hypothetical_protein_1899579..1899729_POSITIVE 677 308 261 51 2 tfor:TF1169|3end_lipoprotein_ABC_transporter,_permease_component_1251573..1251723_POSITIVE 662 128 85 150 107 tfor:TF1762|3end_hypothetical_protein_1899648..1899798_POSITIVE 651 110 61 54 9 tfor:TF0469|3end_hypothetical_protein_487228..487378_POSITIVE 637 210 162 69 16 tfor:TF1583|3end_conserved_hypothetical_protein;_possible_endonuclease_1690223..1690373_POSITIVE