Origin IGS: tttatttatctgttaaaagtttatcccattgaactaaatatgtggttttggagggcgcaaagatacatcttttttatgttttacaaagaaaaggattacgatccgatcagaacgcacacgttaaatctttatatcttcgacaagttttcaaggttatttatatttggggcagtcttgaacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggttgaacagataagttgaacattaaccccatagactgatttctgaaaaaagcccgtcctacacagggtgtggggcaggctctttttatgagaagagagcgtaacta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagttacgctctcttctcataaaaagagcctgccccacaccctgtgtaggacgggcttttttcagaaatcagtctatggggttaatgttcaacttatctgttcaacccaaattacgcggtaccctattgggcgtttaccattaataatggacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgaaatgtgaagcctttttccccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcatgccgggtacatgattcggcgtgtaacacacataaccattacccgaaagggctgaaagccagatatatttcagccccatcccgtaagggtgggggatccatgcccatatcttggttagagggctgaaggcctgaattaaattcattcttattggttctattgcggaatctgggttcaagactgccccaaatataaataaccttgaaaacttgtcgaagatataaagatttaacgtgtgcgttctgatcggatcgtaatccttttctttgtaaaacataaaaaagatgtatctttgcgccctccaaaaccacatatttagttcaatgggataaacttttaacagataaataaa Mask Tandem Repeat Region ================================================ tttatttatctgttaaaagtttatcccattgaactaaatatgtggttttggagggcgcaaagatacatcttttttatgttttacaaagaaaaggattacgatccgatcagaacgcacacgttaaatctttatatcttcgacaagttttcaaggttatttatatttggggcagtcttgaacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggttgaacagataagttgaacattaaccccatagactgatttctgaaaaaagcccgtcctacacagggtgtggggcaggctctttttatgagaagagagcgtaacta Find is-nt database================================================ Query_seq: TF0585:TF0586|TF0585:TF0586:conserved hypothetical protein:conserved hypothetical protein:->->:616824..617452 629 tttatttatctgttaaaagtttatcccattgaactaaatatgtggttttggagggcgcaaagatacatcttttttatgttttacaaagaaaaggattacgatccgatcagaacgcacacgttaaatctttatatcttcgacaagttttcaaggttatttatatttggggcagtcttgaacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggttgaacagataagttgaacattaaccccatagactgatttctgaaaaaagcccgtcctacacagggtgtggggcaggctctttttatgagaagagagcgtaacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0585:TF0586|TF0585:TF0586:conserved hypothetical protein:conserved hypothetical protein:->->:616824..617452 629 tttatttatctgttaaaagtttatcccattgaactaaatatgtggttttggagggcgcaaagatacatcttttttatgttttacaaagaaaaggattacgatccgatcagaacgcacacgttaaatctttatatcttcgacaagttttcaaggttatttatatttggggcagtcttgaacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggttgaacagataagttgaacattaaccccatagactgatttctgaaaaaagcccgtcctacacagggtgtggggcaggctctttttatgagaagagagcgtaacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0585:TF0586|TF0585:TF0586:conserved hypothetical protein:conserved hypothetical protein:->->:616824..617452 629 tttatttatctgttaaaagtttatcccattgaactaaatatgtggttttggagggcgcaaagatacatcttttttatgttttacaaagaaaaggattacgatccgatcagaacgcacacgttaaatctttatatcttcgacaagttttcaaggttatttatatttggggcagtcttgaacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggttgaacagataagttgaacattaaccccatagactgatttctgaaaaaagcccgtcctacacagggtgtggggcaggctctttttatgagaagagagcgtaacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tttatttatctgttaaaagtttatcccattgaactaaatatgtggttttggagggcgcaaagatacatcttttttatgttttacaaagaaaaggattacgatccgatcagaacgcacacgttaaatctttatatcttcgacaagttttcaaggttatttatatttggggcagtcttgaacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggttgaacagataagttgaacattaaccccatagactgatttctgaaaaaagcccgtcctacacagggtgtggggcaggctctttttatgagaagagagcgtaacta Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 42 End: 311 ......................................... M V L E G A K I H L F Y V L Q R K G L R S D Q N A H V K S L Y L R Q V F K V I Y I W G S L E P R F R N R T N K N E F N S .............................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 4 End: 366 ... M Y L L K V Y P I E L N M W F W R A Q R Y I F F M F Y K E K D Y D P I R T H T L N L Y I F D K F S R L F I F G A V L N P ....................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 373 End: 486 .................................................................................................................................................................................................................................................................................................................................................................................... M G G E I I Q P N A K R W G K R L H I S A E G C K P D V T L V V H S Y V H Y ............................................................................................................................................... Protein_Len: 41 Strand: - Start: 489 End: 611 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ H Y V G L L T G R L K P Q V S L N F M L G M S Q N R F F A R G V C P T P C A R K M .................. Protein_Len: 48 Strand: - Start: 389 End: 532 .................................................................................................................................................................................................................................................................................................................................................................................................... E A W H S A N P F F A E C K P P P S Y A Q R L G Q R V N T R G N N I T F A W Y P V A Y N P N F M ................................................................................................. Protein_Len: 60 Strand: - Start: 301 End: 600 ............................................................................................................................................................................................................................................................................................................ K V N R R L A T L R V Y G K D Y M R V D M I L P L R G I P Y R T I Q T S C I L Q V N V G Y V S K Q F F G T R C L T H P M ............................. Protein_Len: 43 Strand: - Start: 230 End: 358 ..................................................................................................................................................................................................................................... G E L W S I P M S G G G K R S P A S I Y R A K L G K P Y H N H T N C A S D H V R C S M ............................................................................................................................................................................................................................................................................... tttatttatctgttaaaagtttatcccattgaactaaatatgtggttttggagggcgcaaagatacatcttttttatgttttacaaagaaaaggattacgatccgatcagaacgcacacgttaaatctttatatcttcgacaagttttcaaggttatttatatttggggcagtcttgaacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggttgaacagataagttgaacattaaccccatagactgatttctgaaaaaagcccgtcctacacagggtgtggggcaggctctttttatgagaagagagcgtaacta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tttatttatctgttaaaagtttatcccattgaactaaatatgtggttttggagggcgcaaagatacatcttttttatgttttacaaagaaaaggattacgatccgatcagaacgcacacgttaaatctttatatcttcgacaagttttcaaggttatttatatttggggcagtcttgaacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggttgaacagataagttgaacattaaccccatagactgatttctgaaaaaagcccgtcctacacagggtgtggggcaggctctttttatgagaagagagcgtaacta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 74 HP_score: -4.4 Tail_Score: -4.99043 Start: 93 End: 104 Full_Region: gtgtgcgttctgatc ggat cgta atcc ttttctttgtaaaac ............................................................................................ggatcgtaatcc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 57 HP_score: -4.6 Tail_Score: -3.68962 Start: 264 End: 317 Full_Region: GGCATGGATCCCCCA CCCTTACGGGATGGGGCTGAAA TATATCTGGC TTTCAGCCCTTTCGGGTAATGG TTATGTGTGTTACAC .......................................................................................................................................................................................................................................................................CCCTTACGGGATGGGGCTGAAATATATCTGGCTTTCAGCCCTTTCGGGTAATGG........................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 68 HP_score: -7.1 Tail_Score: -3.6284 Start: 277 End: 304 Full_Region: CACCCTTACGGGATG GGGCTGAAA TATATCTGGC TTTCAGCCC TTTCGGGTAATGGTT ....................................................................................................................................................................................................................................................................................GGGCTGAAATATATCTGGCTTTCAGCCC..................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -10.5 Tail_Score: -4.82901 Start: 572 End: 604 Full_Region: ACTGATTTCTGAAAA AAGCCCGTCCTACAC AGG GTGTGGGGCAGGCTC TTTTTATGAGAAGAG ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCGTCCTACACAGGGTGTGGGGCAGGCTC......................... TransTerm Strand: + Conf: 100 HP_score: -13.1 Tail_Score: -4.03995 Start: 574 End: 602 Full_Region: TGATTTCTGAAAAAA GCCCGTCCTACAC AGG GTGTGGGGCAGGC TCTTTTTATGAGAAG .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGTCCTACACAGGGTGTGGGGCAGGC........................... Find igs database================================================ Query_seq: TF0585:TF0586|TF0585:TF0586:conserved hypothetical protein:conserved hypothetical protein:->->:616824..617452 629 tttatttatctgttaaaagtttatcccattgaactaaatatgtggttttggagggcgcaaagatacatcttttttatgttttacaaagaaaaggattacgatccgatcagaacgcacacgttaaatctttatatcttcgacaagttttcaaggttatttatatttggggcagtcttgaacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggttgaacagataagttgaacattaaccccatagactgatttctgaaaaaagcccgtcctacacagggtgtggggcaggctctttttatgagaagagagcgtaacta Intra-Species Hit: Count: 21 Min: 1 Max: 629 Len: 629 Subject: tfor_TF0585_TF0586|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[616824,617452]|629 HSP 1 e-value: 0.0 bit: 1247.0 Len: 629 Query Start:1 Query End:629 Subject Strand: POSITIVE Subject Start: 1 Subject End: 629 tttatttatctgttaaaagtttatcccattgaactaaatatgtggttttggagggcgcaaagatacatcttttttatgttttacaaagaaaaggattacgatccgatcagaacgcacacgttaaatctttatatcttcgacaagttttcaaggttatttatatttggggcagtcttgaacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggttgaacagataagttgaacattaaccccatagactgatttctgaaaaaagcccgtcctacacagggtgtggggcaggctctttttatgagaagagagcgtaacta tttatttatctgttaaaagtttatcccattgaactaaatatgtggttttggagggcgcaaagatacatcttttttatgttttacaaagaaaaggattacgatccgatcagaacgcacacgttaaatctttatatcttcgacaagttttcaaggttatttatatttggggcagtcttgaacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggttgaacagataagttgaacattaaccccatagactgatttctgaaaaaagcccgtcctacacagggtgtggggcaggctctttttatgagaagagagcgtaacta Subject: tfor_TF1473_TF1474|hypothetical protein:6- phosphogluconolactonase|POSITIVE:POSITIVE|[1567027, 1567481]|455 HSP 1 e-value: 1.0E-108 bit: 394.0 Len: 349 Query Start:178 Query End:526 Subject Strand: NEGATIVE Subject Start: 32 Subject End: 384 .................................................................................................................................................................................aacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatag--ggggcgagatcattcagcccaatgcgaagcgttgggg--aaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggtt....................................................................................................... .................................................................................................................................................................................aacccagattcggcaatagaacaaataaggatgaatttaattcaggccttcagcccttcgaacaaggtccggatgtcgatcccccacccttacgggatggggctgaaataattcgggctttcagccctttcgggtaatggttatgcgtgttacacgctgaatcatgtacccggcatgacaattaaccattaataaatagggggggggagatcattcagcccaatgcgaagcgttgggggaaaaaaagcatcgtatctcggcggagggctgtaagcctgacgtaaccattgtcgtacattcatacgtccattattaatggaaaacgcccaacagtatatcgcgtgatttgggtt....................................................................................................... Subject: tfor_TF0179_TF0180|pyrophosphate-energized proton pump:carboxynorspermidine decarboxylase|POSITIVE:POSITIVE|[190752,191406]|655 HSP 1 e-value: 2.0E-83 bit: 311.0 Len: 239 Query Start:286 Query End:524 Subject Strand: NEGATIVE Subject Start: 132 Subject End: 382 .............................................................................................................................................................................................................................................................................................tatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgac-------aattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattatt-----aatggtaaacgcccaatagggtaccgcgtaatttggg......................................................................................................... .............................................................................................................................................................................................................................................................................................tatatcgggcttgcagccctttcgggtaatggttatgcgtgttacacgccgaatcatgtacccggcatgaccattgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttgggaaaaaaggcatcgcgtctcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtacattattaatgtaatggtaaacgcccaacagtgtatcgcgtaatttggg......................................................................................................... Subject: tfor_TF2047_TF2048|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2210359,2210782]|424 HSP 1 e-value: 6.0E-46 bit: 186.0 Len: 142 Query Start:378 Query End:519 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 142 .........................................................................................................................................................................................................................................................................................................................................................................................gggcgagatcattcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaat.............................................................................................................. .........................................................................................................................................................................................................................................................................................................................................................................................gggcgagataattcagcccaatgcgaagcgttggggaaaaaggcatcgcatcccggcggagggctgtaagcctgacgtaaccattgtcgtgcattcgtacgtccatgattaatggtaaacgccgaacagtgtatcgcgtaat.............................................................................................................. HSP 2 e-value: 3.0E-17 bit: 91.7 Len: 58 Query Start:178 Query End:235 Subject Strand: NEGATIVE Subject Start: 336 Subject End: 393 .................................................................................................................................................................................aacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctc.......................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................aacccagattccgcaatagaagaaataagaatgaatttaattcaggctttcagccctc.......................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 3.0E-8 bit: 61.9 Len: 47 Query Start:259 Query End:305 Subject Strand: NEGATIVE Subject Start: 264 Subject End: 310 ..................................................................................................................................................................................................................................................................ccccacccttacgggatggggctgaaatatatctggctttcagccct.................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................ccccacccttgcgggatggggctgaaataattcgggctttcagccct.................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1273_TF1274|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1357523,1357760]|238 HSP 1 e-value: 6.0E-43 bit: 176.0 Len: 137 Query Start:388 Query End:524 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 234 ...................................................................................................................................................................................................................................................................................................................................................................................................attcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttggg......................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................attcagcccaatgcgaagcgttgggggaaaaggcatcgcatcccggcggagggctgtaagcctgacgtaaccattgtcgtgcattcgtacgtccatgattaatggtaaacgccgaacagtgtatcgcgtaatttggg......................................................................................................... Subject: tfor_TF0029_TF0030|hypothetical protein:N-acetylneuraminate lyase|POSITIVE:POSITIVE|[25123,25909]|787 HSP 1 e-value: 4.0E-41 bit: 170.0 Len: 137 Query Start:388 Query End:524 Subject Strand: POSITIVE Subject Start: 406 Subject End: 543 ...................................................................................................................................................................................................................................................................................................................................................................................................attcagcccaatgcgaagcgttggggaaaaag-gcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttggg......................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................attcagcccaatgcgaagcgttggggaaaaaaagcatcgcatctcggcggagggctgtaagcttgacgtaaccattgtcgtacattcgtacgtccattattaatggtaaacaccgaacagtgtatcgcgtaatttggg......................................................................................................... HSP 2 e-value: 1.0E-25 bit: 119.0 Len: 88 Query Start:219 Query End:306 Subject Strand: POSITIVE Subject Start: 173 Subject End: 260 ..........................................................................................................................................................................................................................tcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctt................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................tcaggcttacagccctctaaccaaggtatgggcatggatcccccacccttacgggatggggctgaaataattcgggcttccagccctt................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 8.0E-24 bit: 113.0 Len: 57 Query Start:178 Query End:234 Subject Strand: POSITIVE Subject Start: 12 Subject End: 68 .................................................................................................................................................................................aacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccct........................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................aacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccct........................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0339_TF0340|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[363808,364032]|225 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 113 Query Start:388 Query End:500 Subject Strand: NEGATIVE Subject Start: 20 Subject End: 132 ...................................................................................................................................................................................................................................................................................................................................................................................................attcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcc................................................................................................................................. ...................................................................................................................................................................................................................................................................................................................................................................................................attcagcccaatgcgaagcgctggggaaaaaggcatcgcgtctcggcgaagggctgtaagcctgacgtaacccttgtcgtacattcgtacgttcattattaatggtaaacgcc................................................................................................................................. Subject: tfor_TF1483_TF1484|glycosyltransferase family protein:penicillin binding protein|POSITIVE:POSITIVE|[1578886,1579698]|813 HSP 1 e-value: 9.0E-36 bit: 153.0 Len: 81 Query Start:293 Query End:373 Subject Strand: NEGATIVE Subject Start: 509 Subject End: 589 ....................................................................................................................................................................................................................................................................................................ggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaa................................................................................................................................................................................................................................................................ ....................................................................................................................................................................................................................................................................................................ggctttcagccctttcgggtaatggttatgcgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaa................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-13 bit: 77.8 Len: 51 Query Start:184 Query End:234 Subject Strand: NEGATIVE Subject Start: 577 Subject End: 627 .......................................................................................................................................................................................gattccgcaatagaaccaataagaatgaatttaattcaggccttcagccct........................................................................................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................gattccgcaatagaagaaataagaatgaatttaattcaggctttcagccct........................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0021_TF0022|outer membrane phospholipase A:two-component system sensor histidine kinase|POSITIVE:POSITIVE|[16980,17434]|455 HSP 1 e-value: 4.0E-35 bit: 151.0 Len: 172 Query Start:196 Query End:367 Subject Strand: NEGATIVE Subject Start: 59 Subject End: 230 ...................................................................................................................................................................................................gaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccatt...................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................gaacaaataagaatgaatttaattcaggccttcagccctccgaacaaggtccggatgtcgataccccacccttacgggatggggctgaaataattcgggctcccggccctttcgggtaatgggtatgcgcattacacgtcgaatcatgtacccggcatgacaattcaccatt...................................................................................................................................................................................................................................................................... Subject: tfor_TF0467_TF0468|acetyltransferase-related protein:hypothetical protein|POSITIVE:POSITIVE|[486604,487068]|465 HSP 1 e-value: 5.0E-34 bit: 147.0 Len: 125 Query Start:400 Query End:524 Subject Strand: NEGATIVE Subject Start: 24 Subject End: 149 ...............................................................................................................................................................................................................................................................................................................................................................................................................gcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaa-gcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttggg......................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................gcgaagcgttggggaaaaaggcatcgcatctcggcggagggctgaaaagcctgacgtaaccattgtcgtacattcgcacgtccattattaatggtaaacgccgaacaatgtatcgcgtaatttggg......................................................................................................... Subject: tfor_TF1654_TF1655|hypothetical protein:long-chain-fatty-acid-CoA ligase|POSITIVE:POSITIVE|[1768766,1769418]|653 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 82 Query Start:286 Query End:367 Subject Strand: POSITIVE Subject Start: 531 Subject End: 612 .............................................................................................................................................................................................................................................................................................tatatctggctttcagccctttcgggtaatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccatt...................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................tatatcgggcttgcagccctttcgggtaatggttatgcgtgttacacgccgaatcatgtacccggcatgacaattaaccatt...................................................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-24 bit: 113.0 Len: 57 Query Start:178 Query End:234 Subject Strand: POSITIVE Subject Start: 390 Subject End: 446 .................................................................................................................................................................................aacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccct........................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................aacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccct........................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0677_TF0678|ATP-binding protein, Mrp/Nbp35 family, involved in chromosome partitioning:hypothetical protein|POSITIVE:POSITIVE|[721043,721242]|200 HSP 1 e-value: 2.0E-30 bit: 135.0 Len: 175 Query Start:178 Query End:352 Subject Strand: POSITIVE Subject Start: 8 Subject End: 189 .................................................................................................................................................................................aacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttc-------gggtaatggttatgtgtgttacacgccgaatcatgtacccggca..................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................aacccagattacgcaatagaagaaataagaatgaatttaattcaggccttcagccctccgaacaaggtccggatgtcgataccccacccttgcgggatagggctgaaataattcgggctttcagccctttcggacaatggttaatggttatgcgtggtacacgccgaatcatgtacccggca..................................................................................................................................................................................................................................................................................... Subject: tfor_TF0821_TF0822|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[880256,880626]|371 HSP 1 e-value: 5.0E-28 bit: 127.0 Len: 92 Query Start:435 Query End:526 Subject Strand: POSITIVE Subject Start: 110 Subject End: 201 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................ggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggtt....................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................ggagggctgtaagcctgacgtaaccattgtcgtacattcgcacatccattattaatggtaaacgccgaaaagtgtatcgcgtaatttgggtt....................................................................................................... HSP 2 e-value: 2.0E-18 bit: 95.6 Len: 140 Query Start:213 Query End:352 Subject Strand: POSITIVE Subject Start: 200 Subject End: 346 ....................................................................................................................................................................................................................tttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcg------ggt-aatggttatgtgtgttacacgccgaatcatgtacccggca..................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................tttaattcaggccttcagccctccgaacaaggtccggatgtcgataccccacccttgcgggatggggctgaaataattcgggctttcagccctttcggacaatggtcaatggttatgcgtggtacacgccgaatcatgtacccggca..................................................................................................................................................................................................................................................................................... Subject: tfor_TF3003_TF3004|hypothetical protein:phosphoribosylformylglycinamidine (FGAM) synthase|POSITIVE:POSITIVE|[3220690,3220958]|269 HSP 1 e-value: 2.0E-27 bit: 125.0 Len: 143 Query Start:178 Query End:320 Subject Strand: NEGATIVE Subject Start: 29 Subject End: 171 .................................................................................................................................................................................aacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttcgggtaatggtta..................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................aacccagattacgcaatagaagaaataagaatgaatttaattcaggccttcagccctccgaacaaggtccggatgtcgataccccacccttgcgggatggggctgaaataattcgggctttcagccctttcggacaatggtta..................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2190_TF2191|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2365707,2366073]|367 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 175 Query Start:178 Query End:352 Subject Strand: POSITIVE Subject Start: 130 Subject End: 311 .................................................................................................................................................................................aacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctttc-------gggtaatggttatgtgtgttacacgccgaatcatgtacccggca..................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................aacccggattacgcaatagaagaaataagaatgaatttaattcaggccttcagccctccgaacaaggtccggatgtcgataccccacccttgcgggatggggctgaaataattcgggctttcagccctttcggacaatggttaatggttatgcgcggtacactccgaatcatgtacccggca..................................................................................................................................................................................................................................................................................... Subject: tfor_TF1762_TF1763|hypothetical protein:K+-dependent Na+/Ca+ exchanger related-protein|POSITIVE:POSITIVE|[1899709,1900545]|837 HSP 1 e-value: 8.0E-24 bit: 113.0 Len: 129 Query Start:178 Query End:306 Subject Strand: NEGATIVE Subject Start: 231 Subject End: 358 .................................................................................................................................................................................aacccagattccgcaatagaaccaataagaatgaatttaattcaggccttcagccctctaaccaagatatgggcatggatcccccacccttacgggatggggctgaaatatatctggctttcagccctt................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................aacccggattccgcaatagaagaaataaaaatgaatttaattcaggccttcagccctc-cgccgggatataaacatcgataccccacccttgcgggatggggctgaaatatgtcgggctttcagccctt................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1535_TF1537|possible outer membrane receptor protein:hypothetical protein|POSITIVE:POSITIVE|[1642270,1643045]|776 HSP 1 e-value: 1.0E-19 bit: 99.6 Len: 137 Query Start:313 Query End:449 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 342 ........................................................................................................................................................................................................................................................................................................................aatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttggg-gaaaaaggcttcacatttcggcggagggctgtaagcc.................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................aatggttatgcgtggtacagccccaatcatgtaccctgcatgacaattaacaattaataaata-gaggtgtgttaattcagctcaatgcgaagcgttgggagaaaaagggtacacatctcggcgcagggttgtaagcc.................................................................................................................................................................................... Subject: tfor_TF3104_TF3105|outer membrane protein, TonB dependent receptor:hypothetical protein|POSITIVE:POSITIVE|[3337511,3338207]|697 HSP 1 e-value: 4.0E-16 bit: 87.7 Len: 48 Query Start:184 Query End:231 Subject Strand: POSITIVE Subject Start: 446 Subject End: 493 .......................................................................................................................................................................................gattccgcaatagaaccaataagaatgaatttaattcaggccttcagc.............................................................................................................................................................................................................................................................................................................................................................................................................. .......................................................................................................................................................................................gattcggcaatagaaccaataagaatgaatttaattcaggccttcagc.............................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 3.0E-11 bit: 71.9 Len: 44 Query Start:286 Query End:329 Subject Strand: POSITIVE Subject Start: 613 Subject End: 656 .............................................................................................................................................................................................................................................................................................tatatctggctttcagccctttcgggtaatggttatgtgtgtta............................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................tatatcaggctttcagccctttcgggtaatggttatgcgtgtta............................................................................................................................................................................................................................................................................................................ Subject: tfor_TF1181_TF1183|methylated-DNA--[protein]-cysteine S-methyltransferase:hypothetical protein|POSITIVE:POSITIVE|[1268052,1268530]|479 HSP 1 e-value: 2.0E-15 bit: 85.7 Len: 51 Query Start:184 Query End:234 Subject Strand: POSITIVE Subject Start: 177 Subject End: 227 .......................................................................................................................................................................................gattccgcaatagaaccaataagaatgaatttaattcaggccttcagccct........................................................................................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................gattccgcaatagaagaaataagaatgaatttaattcaggccttcagccct........................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-14 bit: 81.8 Len: 57 Query Start:388 Query End:444 Subject Strand: POSITIVE Subject Start: 402 Subject End: 458 ...................................................................................................................................................................................................................................................................................................................................................................................................attcagcccaatgcgaagcgttggggaaaaaggcttcacatttcggcggagggctgt......................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................attcagcccaatgcgaagcgttggggaaaaaggcatcgcatctcggcgaagggctgt......................................................................................................................................................................................... Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 7.0E-15 bit: 83.8 Len: 58 Query Start:400 Query End:457 Subject Strand: NEGATIVE Subject Start: 765 Subject End: 822 ...............................................................................................................................................................................................................................................................................................................................................................................................................gcgaagcgttggggaaaaaggcttcacatttcggcggagggctgtaagcctgacgtaa............................................................................................................................................................................ ...............................................................................................................................................................................................................................................................................................................................................................................................................gcgaagcgttgggaaaaaaggcatcgcatctcggcggagggctgtaagcctgacgtaa............................................................................................................................................................................ HSP 2 e-value: 1.0E-7 bit: 60.0 Len: 46 Query Start:178 Query End:223 Subject Strand: NEGATIVE Subject Start: 949 Subject End: 994 .................................................................................................................................................................................aacccagattccgcaatagaaccaataagaatgaatttaattcagg...................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................aacccggattccgcgatagaagaaataagaatgaatttaattcagg...................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2201_TF2202|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2378345,2378821]|477 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 92 Query Start:435 Query End:526 Subject Strand: NEGATIVE Subject Start: 212 Subject End: 303 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................ggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtccattattaatggtaaacgcccaatagggtaccgcgtaatttgggtt....................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................ggagggctgtaagcctgacataaccattgtcatacatttgcacatccattattaatggtaaacaccaaacagggggtcgcataatttgggtt....................................................................................................... HSP 2 e-value: 1.0E-13 bit: 79.8 Len: 56 Query Start:312 Query End:367 Subject Strand: NEGATIVE Subject Start: 390 Subject End: 444 .......................................................................................................................................................................................................................................................................................................................taatggttatgtgtgttacacgccgaatcatgtacccggcatgacaattaaccatt...................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................taatggttatgcgtggtacacgccgaatcatgtacccggca-gacaattaaccatt...................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-12 bit: 75.8 Len: 42 Query Start:378 Query End:419 Subject Strand: NEGATIVE Subject Start: 317 Subject End: 358 .........................................................................................................................................................................................................................................................................................................................................................................................gggcgagatcattcagcccaatgcgaagcgttggggaaaaag.................................................................................................................................................................................................................. .........................................................................................................................................................................................................................................................................................................................................................................................gggcgagataattcagcccaatgcgaagcgttggggaaaaag.................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUAUUUAUCUGUUAAAAGUUUAUCCCAUUGAACUAAAUAUGUGGUUUUGGAGGGCGCAAAGAUACAUCUUUUUUAUGUUUUACAAAGAAAAGGAUUACGAUCCGAUCAGAACGCACACGUUAAAUCUUUAUAUCUUCGACAAGUUUUCAAGGUUAUUUAUAUUUGGGGCAGUCUUGAACCCAGAUUCCGCAAUAGAACCAAUAAGAAUGAAUUUAAUUCAGGCCUUCAGCCCUCUAACCAAGAUAUGGGCAUGGAUCCCCCACCCUUACGGGAUGGGGCUGAAAUAUAUCUGGCUUUCAGCCCUUUCGGGUAAUGGUUAUGUGUGUUACACGCCGAAUCAUGUACCCGGCAUGACAAUUAACCAUUAAUAAAUAGGGGGCGAGAUCAUUCAGCCCAAUGCGAAGCGUUGGGGAAAAAGGCUUCACAUUUCGGCGGAGGGCUGUAAGCCUGACGUAACCCUUGUCGUACAUUCGUACGUCCAUUAUUAAUGGUAAACGCCCAAUAGGGUACCGCGUAAUUUGGGUUGAACAGAUAAGUUGAACAUUAACCCCAUAGACUGAUUUCUGAAAAAAGCCCGUCCUACACAGGGUGUGGGGCAGGCUCUUUUUAUGAGAAGAGAGCGUAACUA ((.(((((((((((.............((((..((((((((((((..(((.(((((.(.((((((..((((((((.((.....)).))))))))..........(((...((((....))))..)))....)))))).)....))))))))..))))..))))))))..))))....((((((((((.(((......((((.(((.((((........((((((...(((((((((..((.((((.(((((.....(((((.((.(((.((.(...((((((((....((((.(((..(.((((....))))((((((((....(((((...((((...........)))).)))))..))))))))........)..))).))))..))))))))..).))))).)).))))).....)).))).)))).)).)))))))))...))))))............(((((....)))))..)))).))).))))....((((....))))...))).)))))))))).))))))))))).))................((..((((((((((.((((.(((((((((...))))))))).)))).)))))).))))..)).......... (-204.00) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGUUACGCUCUCUUCUCAUAAAAAGAGCCUGCCCCACACCCUGUGUAGGACGGGCUUUUUUCAGAAAUCAGUCUAUGGGGUUAAUGUUCAACUUAUCUGUUCAACCCAAAUUACGCGGUACCCUAUUGGGCGUUUACCAUUAAUAAUGGACGUACGAAUGUACGACAAGGGUUACGUCAGGCUUACAGCCCUCCGCCGAAAUGUGAAGCCUUUUUCCCCAACGCUUCGCAUUGGGCUGAAUGAUCUCGCCCCCUAUUUAUUAAUGGUUAAUUGUCAUGCCGGGUACAUGAUUCGGCGUGUAACACACAUAACCAUUACCCGAAAGGGCUGAAAGCCAGAUAUAUUUCAGCCCCAUCCCGUAAGGGUGGGGGAUCCAUGCCCAUAUCUUGGUUAGAGGGCUGAAGGCCUGAAUUAAAUUCAUUCUUAUUGGUUCUAUUGCGGAAUCUGGGUUCAAGACUGCCCCAAAUAUAAAUAACCUUGAAAACUUGUCGAAGAUAUAAAGAUUUAACGUGUGCGUUCUGAUCGGAUCGUAAUCCUUUUCUUUGUAAAACAUAAAAAAGAUGUAUCUUUGCGCCCUCCAAAACCACAUAUUUAGUUCAAUGGGAUAAACUUUUAACAGAUAAAUAAA .((((..((.....((((((((((((((((((.((.((((...)))).)).)))))))))))............))))))).....))..))))((((((((.((((((.(((.((((((((((....))).....((((.(((.(((((((((((....)))))............((((((((.((((((((.(((((.(((((((((.............)))))))))(((((.....((((((.((((((......(((((((((..(((((((((((((.....))))))))))....)))..)))))))))...((..(((((((((..........)))))))))..)).....)))).))))))))...)))))....)))))..)))))))).))))))))......)))))).))).))))..))))))).))).)))))).........((((....((((((.............((((((((((((..((((.((((....))))..))))...........(((((...((.....))...))))).)))))))))).))..............))))))......))))..........))))))))...... (-198.25) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 995 350 301 156 107 tfor:TF1516|5end_transposase_fragment_1626407..1626637_POSITIVE 940 480 431 188 139 tfor:TF1274|5end_hypothetical_protein_1357621..1357851_POSITIVE 930 480 431 117 68 tfor:TF2640|5end_hypothetical_protein_2809106..2809336_POSITIVE 850 310 261 116 67 tfor:TF2202|5end_hypothetical_protein_2378682..2378912_POSITIVE 840 480 431 88 38 tfor:TF3003|5end_hypothetical_protein_3220382..3220612_POSITIVE 837 450 401 185 137 tfor:TF0499|5end_hypothetical_protein_526257..526487_POSITIVE 836 450 401 222 173 tfor:TF2641|5end_riboflavin_kinase/FAD_synthase_2809681..2809911_POSITIVE 764 500 451 56 2 tfor:TF2639|5end_hypothetical_protein_2809020..2809250_POSITIVE 757 300 252 220 170 tfor:TF1275|5end_transcription-repair_coupling_factor_1357866..1358096_POSITIVE 746 420 375 217 172 tfor:TF0340|5end_hypothetical_protein_363893..364123_POSITIVE 740 519 471 54 6 tfor:TF2025|5end_hypothetical_protein_2181933..2182163_POSITIVE 733 420 376 217 171 tfor:TF2166|5end_hypothetical_protein_2342115..2342345_POSITIVE 720 304 261 231 188 tfor:TF3082|5end_conserved_hypothetical_protein_3316431..3316661_POSITIVE 713 290 241 55 6 tfor:TF2668|5end_hypothetical_protein_2842471..2842701_POSITIVE 713 419 375 216 172 tfor:TF0346|5end_hypothetical_protein_367048..367278_POSITIVE 666 306 264 43 1 tfor:TF2665|5end_hypothetical_protein_2841973..2842203_POSITIVE 660 230 181 175 126 tfor:TF2048|5end_conserved_hypothetical_protein_2210643..2210873_POSITIVE 641 230 181 215 166 tfor:TF1474|5end_6-phosphogluconolactonase_1567342..1567572_POSITIVE 638 369 321 179 124 tfor:TF2994|5end_hypothetical_protein_3210605..3210835_POSITIVE 630 270 221 228 179 tfor:TF2796|5end_cytochrome_D_ubiquinol_oxidase,_subunit_II_2981269..2981499_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1018 479 431 50 2 tfor:TF0339|3end_hypothetical_protein_363747..363897_POSITIVE 982 310 261 80 31 tfor:TF2172|3end_hypothetical_protein_2346135..2346285_POSITIVE 960 440 391 142 93 tfor:TF2025|3end_hypothetical_protein_2182180..2182330_POSITIVE 940 480 431 51 2 tfor:TF2047|3end_hypothetical_protein_2210298..2210448_POSITIVE 859 310 261 127 78 tfor:TF0340|3end_hypothetical_protein_364257..364407_POSITIVE 850 310 261 52 3 tfor:TF3003|3end_hypothetical_protein_3220629..3220779_POSITIVE 792 450 401 69 20 tfor:TF2922|3end_surface_antigen_BspA_3121538..3121688_POSITIVE 767 450 401 78 26 tfor:TF1762|3end_hypothetical_protein_1899648..1899798_POSITIVE 746 440 391 69 23 tfor:TF0344|3end_hypothetical_protein_366963..367113_POSITIVE 734 440 391 71 23 tfor:TF1585|3end_hypothetical_protein_1690610..1690760_POSITIVE 734 440 391 64 16 tfor:TF1584|3end_hypothetical_protein_1690603..1690753_POSITIVE 733 450 401 51 1 tfor:TF0018|3end_hypothetical_protein_12091..12241_POSITIVE 720 440 391 148 100 tfor:TF1592|3end_hypothetical_protein_1708557..1708707_POSITIVE 705 440 391 148 100 tfor:TF1590|3end_hypothetical_protein_1706043..1706193_POSITIVE 684 500 459 43 1 tfor:TF0467|3end_acetyltransferase-related_protein_486543..486693_POSITIVE 660 230 181 99 50 tfor:TF1274|3end_hypothetical_protein_1357895..1358045_POSITIVE 637 419 378 42 1 tfor:TF2350|3end_hypothetical_protein_2515364..2515514_POSITIVE 635 450 405 46 1 tfor:TF2169|3end_hypothetical_protein_2345354..2345504_POSITIVE 600 516 471 49 4 tfor:TF1473|3end_hypothetical_protein_1566966..1567116_POSITIVE 543 450 409 39 1 tfor:TF0343|3end_hypothetical_protein_366923..367073_POSITIVE