Origin IGS: taaagaagagaggccgtctttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgcttccgctcttcccccctttgaagggggggatggggggatgttcctctgcgttcgggacaccgtgtacccggcataacataattcaattgttaattgtcaattgttataccgggtacataatccatattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaattaccttgtcattca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgaatgacaaggtaattgttaattgttatgcgtggtacacgccgaatcatgtacccagcaaataaccattgacaattaacaattggaaaacagccctgaaagggcgtaataattcagcccaatgcgtagcgaagcgaagcgttgggaaacagggcaaccccctcggcggagggctgaaagcctgaatgaatatggattatgtacccggtataacaattgacaattaacaattgaattatgttatgccgggtacacggtgtcccgaacgcagaggaacatccccccatcccccccttcaaaggggggaagagcggaagcgaagcgttggggaaaaaggcatcgcatctcggcggagggctgaaaagcctgacgtaaccattgtcgtacattcgcacgtccattattaatggtaaacgccgaacaatgtatcgcgtaatttgggataaagacggcctctcttcttta Mask Tandem Repeat Region ================================================ taaagaagagaggccgtctttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgcttccgctcttcccccctttgaagggggggatggggggatgttcctctgcgttcgggacaccgtgtacccggcataacataattcaattgttaattgtcaattgttataccgggtacataatccatattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaattaccttgtcattca Find is-nt database================================================ Query_seq: TF0467:TF0468|TF0467:TF0468:acetyltransferase-related protein:hypothetical protein:->->:486604..487068 465 taaagaagagaggccgtctttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgcttccgctcttcccccctttgaagggggggatggggggatgttcctctgcgttcgggacaccgtgtacccggcataacataattcaattgttaattgtcaattgttataccgggtacataatccatattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaattaccttgtcattca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0467:TF0468|TF0467:TF0468:acetyltransferase-related protein:hypothetical protein:->->:486604..487068 465 taaagaagagaggccgtctttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgcttccgctcttcccccctttgaagggggggatggggggatgttcctctgcgttcgggacaccgtgtacccggcataacataattcaattgttaattgtcaattgttataccgggtacataatccatattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaattaccttgtcattca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0467:TF0468|TF0467:TF0468:acetyltransferase-related protein:hypothetical protein:->->:486604..487068 465 taaagaagagaggccgtctttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgcttccgctcttcccccctttgaagggggggatggggggatgttcctctgcgttcgggacaccgtgtacccggcataacataattcaattgttaattgtcaattgttataccgggtacataatccatattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaattaccttgtcattca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaagaagagaggccgtctttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgcttccgctcttcccccctttgaagggggggatggggggatgttcctctgcgttcgggacaccgtgtacccggcataacataattcaattgttaattgtcaattgttataccgggtacataatccatattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaattaccttgtcattca Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 22 End: 222 ..................... M P N Y A I H C S A F T I N N G R A N V R Q W L R Q A F Q P S A E M R C L F P Q R F A S A L P P F E G G D G G M F L C V ................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 29 End: 349 ............................ M T R Y I V R R L P L I M D V R M Y D N G Y V R L F S P P P R C D A F F P N A S L P L F P P L K G G M G G C S S A F G T .................................................................................................................... Protein_Len: 51 Strand: + Start: 235 End: 387 .......................................................................................................................................................................................................................................... M V N C Q L L Y R V H N P Y S F R L S A L R R G G C P V S Q R F A S L R I G L N Y Y A L S G L F S N C .............................................................................. Protein_Len: 48 Strand: + Start: 273 End: 416 ................................................................................................................................................................................................................................................................................ M F I Q A F S P P P R G L P C F P T L R F A T H W A E L L R P F R A V F Q L L I V N G Y L L G T ................................................. Protein_Len: 37 Strand: + Start: 353 End: 463 ................................................................................................................................................................................................................................................................................................................................................................ M I T P F Q G C F P I V N C Q W L F A G Y M I R R V P R I T I N N Y L V I .. Protein_Len: 38 Strand: - Start: 284 End: 397 ........................................................................................................................................................................................................................................................................................... A K L G G G L P N G Q K G V S R K A V C Q A S N N R G K L A T K W N N I T M .................................................................... Protein_Len: 32 Strand: - Start: 249 End: 344 ........................................................................................................................................................................................................................................................ N N Y R T C L G Y E N L S E A R R R P P Q G T E W R K A E S R M ......................................................................................................................... Protein_Len: 43 Strand: - Start: 108 End: 236 ........................................................................................................... G E A S I R H R K G W R K A E A R G G K S P P S P P I N R Q T R S V T Y G A Y C L E M ..................................................................................................................................................................................................................................... Protein_Len: 46 Strand: - Start: 94 End: 231 ............................................................................................. T L S K L G G G L H S A K K G L A E S G S K G G K F P P I P P H E E A N P V G H V R C L M M .......................................................................................................................................................................................................................................... Protein_Len: 58 Strand: - Start: 62 End: 235 ............................................................. Y H V H S H V V I T V D P K E A R R R S A I G K E G V S R K R E E G R Q L P P H P S T G R R E P C R T G P M V Y N M ...................................................................................................................................................................................................................................... taaagaagagaggccgtctttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgcttccgctcttcccccctttgaagggggggatggggggatgttcctctgcgttcgggacaccgtgtacccggcataacataattcaattgttaattgtcaattgttataccgggtacataatccatattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaattaccttgtcattca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaagaagagaggccgtctttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgcttccgctcttcccccctttgaagggggggatggggggatgttcctctgcgttcgggacaccgtgtacccggcataacataattcaattgttaattgtcaattgttataccgggtacataatccatattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaattaccttgtcattca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 93 HP_score: -13.9 Tail_Score: -3.29739 Start: 149 End: 189 Full_Region: TTCCCCAACGCTTCG CTTCCGCTCTTCCCCCCTT TGA AGGGGGGGATGGGGGGATG TTCCTCTGCGTTCGG ....................................................................................................................................................CTTCCGCTCTTCCCCCCTTTGAAGGGGGGGATGGGGGGATG.................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -15.1 Tail_Score: -3.21288 Start: 151 End: 187 Full_Region: CCCCAACGCTTCGCT TCCGCTCTTCCCCCCTT TGA AGGGGGGGATGGGGGGA TGTTCCTCTGCGTTC ......................................................................................................................................................TCCGCTCTTCCCCCCTTTGAAGGGGGGGATGGGGGGA...................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 45 HP_score: -2.2 Tail_Score: -3.30243 Start: 233 End: 252 Full_Region: CGGCATAACATAATT CAATTG TTAATTGT CAATTG TTATACCGGGTACAT ........................................................................................................................................................................................................................................CAATTGTTAATTGTCAATTG..................................................................................................................................................................................................................... TransTerm Strand: + Conf: 74 HP_score: -9.1 Tail_Score: -3.71291 Start: 361 End: 373 Full_Region: GGGCTGAATTATTAC GCCCT TTC AGGGC TGTTTTCCAATTGTT ........................................................................................................................................................................................................................................................................................................................................................................GCCCTTTCAGGGC............................................................................................ Find igs database================================================ Query_seq: TF0467:TF0468|TF0467:TF0468:acetyltransferase-related protein:hypothetical protein:->->:486604..487068 465 taaagaagagaggccgtctttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgcttccgctcttcccccctttgaagggggggatggggggatgttcctctgcgttcgggacaccgtgtacccggcataacataattcaattgttaattgtcaattgttataccgggtacataatccatattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaattaccttgtcattca Intra-Species Hit: Count: 29 Min: 1 Max: 465 Len: 465 Subject: tfor_TF0467_TF0468|acetyltransferase-related protein:hypothetical protein|POSITIVE:POSITIVE|[486604,487068]|465 HSP 1 e-value: 1.0E-156 bit: 553.0 Len: 279 Query Start:187 Query End:465 Subject Strand: POSITIVE Subject Start: 187 Subject End: 465 ..........................................................................................................................................................................................atgttcctctgcgttcgggacaccgtgtacccggcataacataattcaattgttaattgtcaattgttataccgggtacataatccatattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaattaccttgtcattca ..........................................................................................................................................................................................atgttcctctgcgttcgggacaccgtgtacccggcataacataattcaattgttaattgtcaattgttataccgggtacataatccatattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaattaccttgtcattca HSP 2 e-value: 5.0E-92 bit: 339.0 Len: 171 Query Start:1 Query End:171 Subject Strand: POSITIVE Subject Start: 1 Subject End: 171 taaagaagagaggccgtctttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgcttccgctcttcccccctttgaa...................................................................................................................................................................................................................................................................................................... taaagaagagaggccgtctttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgcttccgctcttcccccctttgaa...................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1273_TF1274|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1357523,1357760]|238 HSP 1 e-value: 8.0E-48 bit: 192.0 Len: 133 Query Start:17 Query End:149 Subject Strand: POSITIVE Subject Start: 91 Subject End: 222 ................tctttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ ................tctttatcccaaattacgcgatacactgttcggcgtttaccattaatcatggacgtacgaatgcacgacaatggttacgtcaggc-ttacagccctccgccgggatgcgatgccttttcccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF0029_TF0030|hypothetical protein:N-acetylneuraminate lyase|POSITIVE:POSITIVE|[25123,25909]|787 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 130 Query Start:20 Query End:149 Subject Strand: NEGATIVE Subject Start: 418 Subject End: 547 ...................ttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgc-ctttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ ...................ttatcccaaattacgcgatacactgttcggtgtttaccattaataatggacgtacgaatgtacgacaatggttacgtcaagc-ttacagccctccgccgagatgcgatgctttttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 5.0E-9 bit: 63.9 Len: 40 Query Start:335 Query End:374 Subject Strand: NEGATIVE Subject Start: 386 Subject End: 425 ..............................................................................................................................................................................................................................................................................................................................................cgctacgcattgggctgaattattacgccctttcagggct........................................................................................... ..............................................................................................................................................................................................................................................................................................................................................cgcttcgcattgggctgaattattatgccctttcagggct........................................................................................... Subject: tfor_TF2047_TF2048|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2210359,2210782]|424 HSP 1 e-value: 5.0E-43 bit: 176.0 Len: 121 Query Start:29 Query End:149 Subject Strand: POSITIVE Subject Start: 1 Subject End: 120 ............................attacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ ............................attacgcgatacactgttcggcgtttaccattaatcatggacgtacgaatgcacgacaatggttacgtcaggc-ttacagccctccgccgggatgcgatgcctttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 40 Query Start:335 Query End:374 Subject Strand: POSITIVE Subject Start: 113 Subject End: 152 ..............................................................................................................................................................................................................................................................................................................................................cgctacgcattgggctgaattattacgccctttcagggct........................................................................................... ..............................................................................................................................................................................................................................................................................................................................................cgcttcgcattgggctgaattatctcgccctttcagggct........................................................................................... Subject: tfor_TF1841_TF1842|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1992328,1992710]|383 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 122 Query Start:268 Query End:389 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 270 ...........................................................................................................................................................................................................................................................................aatccatattcattcaggctttcagccctccgccgagggggttgccctgttt-cccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgtta............................................................................ ...........................................................................................................................................................................................................................................................................aatccatatttattcaggctttcagccctccgccgagggggtcgcccttttttcccaacgcttcgctttgctgcacattgggctgaattaatacgccctttcagggctgtttttcaattgtta............................................................................ HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 64 Query Start:382 Query End:445 Subject Strand: POSITIVE Subject Start: 87 Subject End: 155 .............................................................................................................................................................................................................................................................................................................................................................................................aattgttaattgtcaatggttatt-----tgctgggtacatgattcggcgtgtaccacgcataacaatt.................... .............................................................................................................................................................................................................................................................................................................................................................................................aattgttaattgtcaatggttaatggttatgccggatacatgatttggcgtgtaccacgcataacaatt.................... Subject: tfor_TF1585_TF1586|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1690671,1691110]|440 HSP 1 e-value: 3.0E-38 bit: 161.0 Len: 105 Query Start:341 Query End:445 Subject Strand: POSITIVE Subject Start: 58 Subject End: 162 ....................................................................................................................................................................................................................................................................................................................................................gcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaatt.................... ....................................................................................................................................................................................................................................................................................................................................................gcattgggctgaattaacacgccctttcagggctgttttccaattgttagttgttaatggttatttgccgggtacatgattcgacgtgtaccacgcataacaatt.................... HSP 2 e-value: 1.0E-18 bit: 95.6 Len: 56 Query Start:274 Query End:329 Subject Strand: POSITIVE Subject Start: 1 Subject End: 56 .................................................................................................................................................................................................................................................................................tattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgctt........................................................................................................................................ .................................................................................................................................................................................................................................................................................tattcattcaggctttcagccctccgctgagggggttgccttgtttcccaacgctt........................................................................................................................................ Subject: tfor_TF0370_TF0371|hypothetical protein:beta-mannosidase precursor|POSITIVE:POSITIVE|[386378,386902]|525 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 141 Query Start:24 Query End:164 Subject Strand: NEGATIVE Subject Start: 43 Subject End: 181 .......................cccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctcc--gccgagatgcgatgcctttttccccaacgcttcgcttccgctcttccccc............................................................................................................................................................................................................................................................................................................. .......................cccaaattacgcgatacactgttcggcgtttaccattaacaatggatgtgcgaatgtacgacaatggttacgtcaggc-ttacagccctcccaacggagat---attgctttttccccaacgcttcgcttccgctcttccccc............................................................................................................................................................................................................................................................................................................. Subject: tfor_TF0339_TF0340|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[363808,364032]|225 HSP 1 e-value: 7.0E-36 bit: 153.0 Len: 121 Query Start:29 Query End:149 Subject Strand: POSITIVE Subject Start: 1 Subject End: 120 ............................attacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ ............................attacgcgatacacggttcggcgtttaccattaataatgaacgtacgaatgtacgacaagggttacgtcaggc-ttacagcccttcgccgagacgcgatgcctttttccccagcgcttcgc............................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 40 Query Start:335 Query End:374 Subject Strand: POSITIVE Subject Start: 113 Subject End: 152 ..............................................................................................................................................................................................................................................................................................................................................cgctacgcattgggctgaattattacgccctttcagggct........................................................................................... ..............................................................................................................................................................................................................................................................................................................................................cgcttcgcattgggctgaattaacacgccctttcagggct........................................................................................... Subject: tfor_TF2920_TF2921|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3117231,3118637]|1407 HSP 1 e-value: 3.0E-35 bit: 151.0 Len: 104 Query Start:274 Query End:377 Subject Strand: POSITIVE Subject Start: 504 Subject End: 607 .................................................................................................................................................................................................................................................................................tattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgtt........................................................................................ .................................................................................................................................................................................................................................................................................tattcattcaggctttcagccctccgccgagggggtcgccctgtttcccaacgcttcgcttcgctgcacattggactgaattaacgcgccctttcagggctgtt........................................................................................ HSP 2 e-value: 6.0E-33 bit: 143.0 Len: 101 Query Start:274 Query End:374 Subject Strand: POSITIVE Subject Start: 823 Subject End: 927 .................................................................................................................................................................................................................................................................................tattcattcaggctttcagccctccgccgagggggttgccctgtttc----ccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggct........................................................................................... .................................................................................................................................................................................................................................................................................tattcattcaggctttcagccctccgctgagggggttgccctgttttttttccaacgcttcgcttcgctgcgcattgggctgaattaatacgccctttcagggct........................................................................................... Subject: tfor_TF0585_TF0586|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[616824,617452]|629 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 126 Query Start:24 Query End:149 Subject Strand: NEGATIVE Subject Start: 400 Subject End: 524 .......................cccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ .......................cccaaattacgcggtaccctattgggcgtttaccattaataatggacgtacgaatgtacgacaagggttacgtcaggc-ttacagccctccgccgaaatgtgaagcctttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF0179_TF0180|pyrophosphate-energized proton pump:carboxynorspermidine decarboxylase|POSITIVE:POSITIVE|[190752,191406]|655 HSP 1 e-value: 6.0E-33 bit: 143.0 Len: 131 Query Start:19 Query End:149 Subject Strand: POSITIVE Subject Start: 127 Subject End: 261 ..................tttatcccaaattacgcgatacattgttcggcgtttaccatta-----ataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ ..................tttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggctta-cagccctccgccgagacgcgatgccttttttcccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-10 bit: 67.9 Len: 61 Query Start:386 Query End:446 Subject Strand: POSITIVE Subject Start: 298 Subject End: 356 .................................................................................................................................................................................................................................................................................................................................................................................................gttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaatta................... .................................................................................................................................................................................................................................................................................................................................................................................................gttaattgtcaatggtcat--gccgggtacatgattcggcgtgtaacacgcataaccatta................... Subject: tfor_TF1473_TF1474|hypothetical protein:6- phosphogluconolactonase|POSITIVE:POSITIVE|[1567027, 1567481]|455 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 131 Query Start:19 Query End:149 Subject Strand: POSITIVE Subject Start: 29 Subject End: 160 ..................tttatcccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgccttttt--ccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ ..................tttaacccaaatcacgcgatatactgttgggcgttttccattaataatggacgtatgaatgtacgacaatggttacgtcaggc-ttacagccctccgccgagatacgatgctttttttcccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF0821_TF0822|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[880256,880626]|371 HSP 1 e-value: 2.0E-30 bit: 135.0 Len: 80 Query Start:24 Query End:103 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 199 .......................cccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggctt.......................................................................................................................................................................................................................................................................................................................................................................... .......................cccaaattacgcgatacacttttcggcgtttaccattaataatggatgtgcgaatgtacgacaatggttacgtcaggctt.......................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-15 bit: 83.8 Len: 46 Query Start:396 Query End:441 Subject Strand: NEGATIVE Subject Start: 311 Subject End: 356 ...........................................................................................................................................................................................................................................................................................................................................................................................................aatggttatttgctgggtacatgattcggcgtgtaccacgcataac........................ ...........................................................................................................................................................................................................................................................................................................................................................................................................aatggttatttgccgggtacatgattcggcgtgtaccacgcataac........................ HSP 3 e-value: 1.0E-9 bit: 65.9 Len: 33 Query Start:132 Query End:164 Subject Strand: NEGATIVE Subject Start: 62 Subject End: 94 ...................................................................................................................................ttttccccaacgcttcgcttccgctcttccccc............................................................................................................................................................................................................................................................................................................. ...................................................................................................................................ttttccccaacgcttcgcttccgctcttccccc............................................................................................................................................................................................................................................................................................................. Subject: tfor_TF2438_TF2439|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2616218,2616519]|302 HSP 1 e-value: 6.0E-27 bit: 123.0 Len: 94 Query Start:281 Query End:374 Subject Strand: POSITIVE Subject Start: 118 Subject End: 211 ........................................................................................................................................................................................................................................................................................tcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggct........................................................................................... ........................................................................................................................................................................................................................................................................................tcaggctttcagccctccgctgagggggtcgcctgttttcccaacgcttcgcttcgctacacattgggctgaattaatgcgccctttcagggct........................................................................................... HSP 2 e-value: 3.0E-19 bit: 97.6 Len: 73 Query Start:381 Query End:453 Subject Strand: POSITIVE Subject Start: 38 Subject End: 110 ............................................................................................................................................................................................................................................................................................................................................................................................caattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaatta............ ............................................................................................................................................................................................................................................................................................................................................................................................caatggttaattgttaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaacaatta............ Subject: tfor_TF2201_TF2202|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2378345,2378821]|477 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 114 Query Start:335 Query End:448 Subject Strand: POSITIVE Subject Start: 329 Subject End: 446 ..............................................................................................................................................................................................................................................................................................................................................cgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggtta----tttgctgggtacatgattcggcgtgtaccacgcataacaattaac................. ..............................................................................................................................................................................................................................................................................................................................................cgcttcgcattgggctgaattatctcgccctttcagggctgtttattaatggttaattgtcaatggttaattgtctgccgggtacatgattcggcgtgtaccacgcataaccattaac................. HSP 2 e-value: 5.0E-12 bit: 73.8 Len: 53 Query Start:51 Query End:103 Subject Strand: POSITIVE Subject Start: 241 Subject End: 293 ..................................................gtttaccattaataatggacgtgcgaatgtacgacaatggttacgtcaggctt.......................................................................................................................................................................................................................................................................................................................................................................... ..................................................gtttaccattaataatggatgtgcaaatgtatgacaatggttatgtcaggctt.......................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1848_TF1850|conserved hypothetical protein:Na+/H+-exchanging protein|POSITIVE:POSITIVE|[1998005,1998681]|677 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 124 Query Start:281 Query End:404 Subject Strand: NEGATIVE Subject Start: 48 Subject End: 170 ........................................................................................................................................................................................................................................................................................tcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgttttccaattgttaattgtcaatggttat............................................................. ........................................................................................................................................................................................................................................................................................tcaggctttcagccctccgctgagggggtcgctct-ttccccaacacttcgctgcgctccacattgggctgaattaacgcgccctttcagggctcttctctaatggttaattgtcaatggttat............................................................. Subject: tfor_TF2922_TF2923|surface antigen BspA:hypothetical protein|POSITIVE:POSITIVE|[3121599,3122307]|709 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 85 Query Start:381 Query End:465 Subject Strand: POSITIVE Subject Start: 346 Subject End: 430 ............................................................................................................................................................................................................................................................................................................................................................................................caattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaattaccttgtcattca ............................................................................................................................................................................................................................................................................................................................................................................................caatggttaattgtcaatggttattttctaaatacatgattcggcgtgtaccacgcataacaattaaccattaatttgtcattca HSP 2 e-value: 3.0E-19 bit: 97.6 Len: 68 Query Start:268 Query End:335 Subject Strand: POSITIVE Subject Start: 7 Subject End: 75 ...........................................................................................................................................................................................................................................................................aatccatattcattcaggctttcagccctccgccgagggggttgccctgttt-cccaacgcttcgcttc.................................................................................................................................. ...........................................................................................................................................................................................................................................................................aatccatattcattcaggctttcagccctccgccgaggggggcgccctttttccccaacgcttcgcttc.................................................................................................................................. HSP 3 e-value: 1.0E-9 bit: 65.9 Len: 69 Query Start:103 Query End:171 Subject Strand: POSITIVE Subject Start: 26 Subject End: 93 ......................................................................................................tttcagccctccgccgagatgcgatgcctttttccccaacgcttcgcttccgctcttcccccctttgaa...................................................................................................................................................................................................................................................................................................... ......................................................................................................tttcagccctccgccgaggggggcgccctttttccccaacgcttcgcttccgc-attcccccctttgaa...................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1187_TF1188|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1269933,1270295]|363 HSP 1 e-value: 8.0E-20 bit: 99.6 Len: 70 Query Start:24 Query End:93 Subject Strand: NEGATIVE Subject Start: 181 Subject End: 250 .......................cccaaattacgcgatacattgttcggcgtttaccattaataatggacgtgcgaatgtacgacaatggtta.................................................................................................................................................................................................................................................................................................................................................................................... .......................cccaaattacgcgatacactgttcggcatttaccgttagtaatggacatgcgaatgtacgacaatggtta.................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-12 bit: 73.8 Len: 73 Query Start:381 Query End:453 Subject Strand: NEGATIVE Subject Start: 117 Subject End: 189 ............................................................................................................................................................................................................................................................................................................................................................................................caattgttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaattaacaatta............ ............................................................................................................................................................................................................................................................................................................................................................................................caatggttaattatcaatggttattttctaaatacatgattcggcgtgtacccggcataacaattaaccatta............ Subject: tfor_TF2547_TF2548|hypothetical protein:30S ribosomal protein S12|POSITIVE:POSITIVE|[2731008,2731377]|370 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 103 Query Start:19 Query End:121 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 107 ..................tttatcccaaattacgcgatacattgttcggcgtttaccat-taataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgaga........................................................................................................................................................................................................................................................................................................................................................ ..................tttatcccaaattacgcgatacaccgttcggcgtttatcatataataatagacgtacgaatatacgacaagggttacgtcagac-ttacaaccctccgccgaga........................................................................................................................................................................................................................................................................................................................................................ Subject: tfor_TF0685_TF0686|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[731193,732338]|1146 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 97 Query Start:281 Query End:377 Subject Strand: POSITIVE Subject Start: 770 Subject End: 867 ........................................................................................................................................................................................................................................................................................tcaggctttcagccctccgccgagggg-gttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgtt........................................................................................ ........................................................................................................................................................................................................................................................................................tcaggcttacagccctccgccgagatgcgatgccttttttcccaacgcttcgctgcgctccacattgggctgaattaatgcgccctttcagggctgtt........................................................................................ HSP 2 e-value: 3.0E-16 bit: 87.7 Len: 60 Query Start:91 Query End:150 Subject Strand: POSITIVE Subject Start: 765 Subject End: 823 ..........................................................................................ttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgct........................................................................................................................................................................................................................................................................................................................... ..........................................................................................ttacgtcaggctta-cagccctccgccgagatgcgatgccttttttcccaacgcttcgct........................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 1.0E-6 bit: 56.0 Len: 28 Query Start:425 Query End:452 Subject Strand: POSITIVE Subject Start: 517 Subject End: 544 ........................................................................................................................................................................................................................................................................................................................................................................................................................................cgtgtaccacgcataacaattaacaatt............. ........................................................................................................................................................................................................................................................................................................................................................................................................................................cgtgtaccacgcataacaattaacaatt............. Subject: tfor_TF2840_TF2841|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[3031350,3031580]|231 HSP 1 e-value: 8.0E-17 bit: 89.7 Len: 101 Query Start:279 Query End:379 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 103 ......................................................................................................................................................................................................................................................................................attcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggctgtttt...................................................................................... ......................................................................................................................................................................................................................................................................................attcaggctttcagccctctgccgagagggta-ccttttttccctacgcttcccttcgctacccatcgggctgaattaacacaccctttcagggctgtttt...................................................................................... Subject: tfor_TF2815_TF2816|meso-diaminopimelate D-dehydrogenase:hypothetical protein|POSITIVE:POSITIVE|[3006481,3007064]|584 HSP 1 e-value: 5.0E-15 bit: 83.8 Len: 58 Query Start:317 Query End:374 Subject Strand: POSITIVE Subject Start: 233 Subject End: 290 ............................................................................................................................................................................................................................................................................................................................tttcccaacgcttcgcttcgctacgcattgggctgaattattacgccctttcagggct........................................................................................... ............................................................................................................................................................................................................................................................................................................................tttcccaacgcttcgcttcgctccacattgggctgaattaatgcgccctttcagggct........................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 31 Query Start:225 Query End:255 Subject Strand: POSITIVE Subject Start: 480 Subject End: 510 ................................................................................................................................................................................................................................acataattcaattgttaattgtcaattgtta.................................................................................................................................................................................................................. ................................................................................................................................................................................................................................acataattcaattgttaatggtcaattgtta.................................................................................................................................................................................................................. Subject: tfor_TF1483_TF1484|glycosyltransferase family protein:penicillin binding protein|POSITIVE:POSITIVE|[1578886,1579698]|813 HSP 1 e-value: 8.0E-14 bit: 79.8 Len: 68 Query Start:268 Query End:335 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 212 ...........................................................................................................................................................................................................................................................................aatccatattcattcaggctttcagccctccgccgagggggttgccctgtttcccaacgcttcgcttc.................................................................................................................................. ...........................................................................................................................................................................................................................................................................aatccatattcattcaggctttcagccctccgctga-ggggttgcctgttttcccaatgcttcgcttc.................................................................................................................................. HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 37 Query Start:410 Query End:446 Subject Strand: POSITIVE Subject Start: 534 Subject End: 570 .........................................................................................................................................................................................................................................................................................................................................................................................................................gggtacatgattcggcgtgtaccacgcataacaatta................... .........................................................................................................................................................................................................................................................................................................................................................................................................................gggtacatgattcggcgtgtaacacgcataaccatta................... Subject: tfor_TF1181_TF1183|methylated-DNA--[protein]-cysteine S-methyltransferase:hypothetical protein|POSITIVE:POSITIVE|[1268052,1268530]|479 HSP 1 e-value: 8.0E-14 bit: 79.8 Len: 44 Query Start:106 Query End:149 Subject Strand: NEGATIVE Subject Start: 414 Subject End: 457 .........................................................................................................cagccctccgccgagatgcgatgcctttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ .........................................................................................................cagcccttcgccgagatgcgatgcctttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 40 Query Start:335 Query End:374 Subject Strand: NEGATIVE Subject Start: 382 Subject End: 421 ..............................................................................................................................................................................................................................................................................................................................................cgctacgcattgggctgaattattacgccctttcagggct........................................................................................... ..............................................................................................................................................................................................................................................................................................................................................cgcttcgcattgggctgaattaatgcgccctttcagggct........................................................................................... Subject: tfor_TF2640_TF2641|hypothetical protein:riboflavin kinase/FAD synthase|POSITIVE:POSITIVE|[2809594,2809820]|227 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 47 Query Start:103 Query End:149 Subject Strand: POSITIVE Subject Start: 101 Subject End: 147 ......................................................................................................tttcagccctccgccgagatgcgatgcctttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ ......................................................................................................tttcagccctccgctgagatgcgatgcttttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 33 Query Start:268 Query End:300 Subject Strand: POSITIVE Subject Start: 82 Subject End: 114 ...........................................................................................................................................................................................................................................................................aatccatattcattcaggctttcagccctccgc..................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................aatccatattcattcaggctttcagccctccgc..................................................................................................................................................................... Subject: tfor_TF1182_TF1184|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1268999,1269143]|145 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 59 Query Start:91 Query End:149 Subject Strand: NEGATIVE Subject Start: 53 Subject End: 110 ..........................................................................................ttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgc............................................................................................................................................................................................................................................................................................................................ ..........................................................................................ttacgtcaggctta-cagcccttcgccgagatgcgatgcctttttcccaaacgcttcgc............................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 43 Query Start:335 Query End:377 Subject Strand: NEGATIVE Subject Start: 18 Subject End: 60 ..............................................................................................................................................................................................................................................................................................................................................cgctacgcattgggctgaattattacgccctttcagggctgtt........................................................................................ ..............................................................................................................................................................................................................................................................................................................................................cgcttcgcattgggctgaattatctcgccctttcagggctgtt........................................................................................ HSP 3 e-value: 3.0E-7 bit: 58.0 Len: 29 Query Start:228 Query End:256 Subject Strand: POSITIVE Subject Start: 108 Subject End: 136 ...................................................................................................................................................................................................................................taattcaattgttaattgtcaattgttat................................................................................................................................................................................................................. ...................................................................................................................................................................................................................................taattcaattgttaattgtcaattgttat................................................................................................................................................................................................................. Subject: tfor_TF2993_TF2994|SAM-dependent methyltransferase:hypothetical protein|POSITIVE:POSITIVE|[3210478,3210744]|267 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 38 Query Start:411 Query End:448 Subject Strand: POSITIVE Subject Start: 209 Subject End: 246 ..........................................................................................................................................................................................................................................................................................................................................................................................................................ggtacatgattcggcgtgtaccacgcataacaattaac................. ..........................................................................................................................................................................................................................................................................................................................................................................................................................ggtacatgattcggcgtgtaccacgcataacaattaac................. HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:218 Query End:253 Subject Strand: POSITIVE Subject Start: 159 Subject End: 194 .........................................................................................................................................................................................................................cggcataacataattcaattgttaattgtcaattgt.................................................................................................................................................................................................................... .........................................................................................................................................................................................................................cggcataacataattcaattgttaatggttaattgt.................................................................................................................................................................................................................... Subject: tfor_TF2996_TF2997|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3211182,3211547]|366 HSP 1 e-value: 3.0E-10 bit: 67.9 Len: 50 Query Start:218 Query End:267 Subject Strand: POSITIVE Subject Start: 114 Subject End: 163 .........................................................................................................................................................................................................................cggcataacataattcaattgttaattgtcaattgttataccgggtacat...................................................................................................................................................................................................... .........................................................................................................................................................................................................................cggcataacataattcaattgtcaatggttaattgttataccaggtacat...................................................................................................................................................................................................... HSP 2 e-value: 3.0E-10 bit: 67.9 Len: 42 Query Start:411 Query End:452 Subject Strand: POSITIVE Subject Start: 157 Subject End: 198 ..........................................................................................................................................................................................................................................................................................................................................................................................................................ggtacatgattcggcgtgtaccacgcataacaattaacaatt............. ..........................................................................................................................................................................................................................................................................................................................................................................................................................ggtacatgattcggcgtgtaccacgcataaccattgacaatt............. HSP 3 e-value: 3.0E-10 bit: 67.9 Len: 34 Query Start:415 Query End:448 Subject Strand: POSITIVE Subject Start: 218 Subject End: 251 ..............................................................................................................................................................................................................................................................................................................................................................................................................................catgattcggcgtgtaccacgcataacaattaac................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................catgattcggcgtgtaccacgcataacaattaac................. Subject: tfor_TF2816_TF2817|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3007245,3007497]|253 HSP 1 e-value: 3.0E-7 bit: 58.0 Len: 33 Query Start:413 Query End:445 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 238 ............................................................................................................................................................................................................................................................................................................................................................................................................................tacatgattcggcgtgtaccacgcataacaatt.................... ............................................................................................................................................................................................................................................................................................................................................................................................................................tacatgattcggcgtgtaccacgcataataatt.................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 31 Query Start:225 Query End:255 Subject Strand: POSITIVE Subject Start: 11 Subject End: 41 ................................................................................................................................................................................................................................acataattcaattgttaattgtcaattgtta.................................................................................................................................................................................................................. ................................................................................................................................................................................................................................acataattcaattgttaatggtcaattgtta.................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAGAAGAGAGGCCGUCUUUAUCCCAAAUUACGCGAUACAUUGUUCGGCGUUUACCAUUAAUAAUGGACGUGCGAAUGUACGACAAUGGUUACGUCAGGCUUUUCAGCCCUCCGCCGAGAUGCGAUGCCUUUUUCCCCAACGCUUCGCUUCCGCUCUUCCCCCCUUUGAAGGGGGGGAUGGGGGGAUGUUCCUCUGCGUUCGGGACACCGUGUACCCGGCAUAACAUAAUUCAAUUGUUAAUUGUCAAUUGUUAUACCGGGUACAUAAUCCAUAUUCAUUCAGGCUUUCAGCCCUCCGCCGAGGGGGUUGCCCUGUUUCCCAACGCUUCGCUUCGCUACGCAUUGGGCUGAAUUAUUACGCCCUUUCAGGGCUGUUUUCCAAUUGUUAAUUGUCAAUGGUUAUUUGCUGGGUACAUGAUUCGGCGUGUACCACGCAUAACAAUUAACAAUUACCUUGUCAUUCA .......((((((((.....((((.(.......).))))........(((((..(((((......((..(((((....))))).))))))).))))).)))))))).((((...((...((.((((.((.....((((.(((((...((.(((.(((.((((((((.....)))))))).))).))).))......))))).))))....((((((((((.((((((.....((((.....)))).....)))))).))))))))))..............((((....((((((.((.....)))))))).)))).........)).)))).)).....))...)))).((((......((((.....))))........(((((((((((((...........(((..((((((((......))))))))..)))..)))))))))))))........)))). (-163.32) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAAUGACAAGGUAAUUGUUAAUUGUUAUGCGUGGUACACGCCGAAUCAUGUACCCAGCAAAUAACCAUUGACAAUUAACAAUUGGAAAACAGCCCUGAAAGGGCGUAAUAAUUCAGCCCAAUGCGUAGCGAAGCGAAGCGUUGGGAAACAGGGCAACCCCCUCGGCGGAGGGCUGAAAGCCUGAAUGAAUAUGGAUUAUGUACCCGGUAUAACAAUUGACAAUUAACAAUUGAAUUAUGUUAUGCCGGGUACACGGUGUCCCGAACGCAGAGGAACAUCCCCCCAUCCCCCCCUUCAAAGGGGGGAAGAGCGGAAGCGAAGCGUUGGGGAAAAAGGCAUCGCAUCUCGGCGGAGGGCUGAAAAGCCUGACGUAACCAUUGUCGUACAUUCGCACGUCCAUUAUUAAUGGUAAACGCCGAACAAUGUAUCGCGUAAUUUGGGAUAAAGACGGCCUCUCUUCUUUA (((((..(((..(((((((((((.(((((((..((((((.(......).))))))..)))..)))).)))))))))))....))).......((((.....))))......))))).((((((((...((...))...)))))))).....((....)).....((.(((((((((...((((............((..((((((((((((((((.....((((.....)))).....))))))))))))))))..)).((((.(((((...((.....)).......(((((((....)))))))....((....))...))))).))))...)))).....(((((.(((..(((((....)))))..))).......((.(((((((((..(((((((.....))))...))).)))...)))))).)).......))))).....))))).)))).))... (-169.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1060 170 121 86 37 tfor:TF3107|5end_hypothetical_protein_3338459..3338689_POSITIVE 972 200 153 222 175 tfor:TF0540|5end_conserved_hypothetical_protein;_possible_surface_protein_567286..567516_POSITIVE 966 199 153 60 10 tfor:TF2745|5end_hypothetical_protein_2927562..2927792_POSITIVE 961 200 153 57 2 tfor:TF3106|5end_hypothetical_protein_3338355..3338585_POSITIVE 958 220 172 83 36 tfor:TF1842|5end_hypothetical_protein_1992571..1992801_POSITIVE 919 219 171 76 29 tfor:TF2746|5end_hypothetical_protein_2927996..2928226_POSITIVE 918 140 91 209 161 tfor:TF1187|5end_hypothetical_protein_1269625..1269855_POSITIVE 918 140 91 152 104 tfor:TF1186|5end_hypothetical_protein_1269568..1269798_POSITIVE 916 149 106 157 114 tfor:TF1183|5end_hypothetical_protein_1268391..1268621_POSITIVE 916 210 161 64 14 tfor:TF0828|5end_hypothetical_protein_887090..887320_POSITIVE 916 149 106 46 4 tfor:TF0821|5end_hypothetical_protein_879879..880109_POSITIVE 896 330 281 180 132 tfor:TF2478|5end_hypothetical_protein_2655375..2655605_POSITIVE 868 138 91 173 127 tfor:TF1184|5end_hypothetical_protein_1269004..1269234_POSITIVE 864 200 151 210 162 tfor:TF1840|5end_transposase_1990221..1990451_POSITIVE 862 227 181 218 172 tfor:TF2818|5end_acetylornithine_aminotransferase_3007739..3007969_POSITIVE 823 440 396 151 107 tfor:TF0822|5end_hypothetical_protein_880487..880717_POSITIVE 813 440 391 189 133 tfor:TF0679|5end_hypothetical_protein_721155..721385_POSITIVE 813 440 391 137 81 tfor:TF0678|5end_hypothetical_protein_721103..721333_POSITIVE 807 119 71 53 8 tfor:TF2191|5end_hypothetical_protein_2365934..2366164_POSITIVE 803 80 31 152 103 tfor:TF0823|5end_conserved_hypothetical_protein_880660..880890_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1039 160 111 145 94 tfor:TF3106|3end_hypothetical_protein_3338608..3338758_POSITIVE 1018 200 153 125 77 tfor:TF0370|3end_hypothetical_protein_386317..386467_POSITIVE 1004 200 153 104 58 tfor:TF0821|3end_hypothetical_protein_880195..880345_POSITIVE 962 149 101 114 67 tfor:TF2547|3end_hypothetical_protein_2730947..2731097_POSITIVE 940 199 151 82 30 tfor:TF0828|3end_hypothetical_protein_887508..887658_POSITIVE 918 140 91 67 19 tfor:TF1185|3end_hypothetical_protein_1269563..1269713_POSITIVE 908 220 172 56 9 tfor:TF1483|3end_glycosyltransferase_family_protein_1578825..1578975_POSITIVE 826 190 144 87 42 tfor:TF2651|3end_hypothetical_protein_2822014..2822164_POSITIVE 823 440 396 134 90 tfor:TF0820|3end_hypothetical_protein_879942..880092_POSITIVE 816 90 41 116 67 tfor:TF0678|3end_hypothetical_protein_721335..721485_POSITIVE 748 379 332 87 40 tfor:TF2840|3end_hypothetical_protein_3031289..3031439_POSITIVE 733 377 335 73 31 tfor:TF1182|3end_hypothetical_protein_1268938..1269088_POSITIVE 652 190 147 151 107 tfor:TF2816|3end_hypothetical_protein_3007184..3007334_POSITIVE 636 174 142 143 112 tfor:TF1842|3end_hypothetical_protein_1992800..1992950_POSITIVE 554 326 281 140 88 tfor:TF1274|3end_hypothetical_protein_1357895..1358045_POSITIVE 543 330 281 139 88 tfor:TF1405|3end_conserved_hypothetical_protein_1481819..1481969_POSITIVE 537 369 325 48 4 tfor:TF0533|3end_hypothetical_protein_559519..559669_POSITIVE 524 172 134 151 118 tfor:TF0539|3end_hypothetical_protein_567323..567473_POSITIVE 516 410 362 48 1 tfor:TF1848|3end_conserved_hypothetical_protein_1997944..1998094_POSITIVE 514 425 381 135 88 tfor:TF1762|3end_hypothetical_protein_1899648..1899798_POSITIVE