Origin IGS:
taactatatagtataactaatcgagatgaggattttttttgtttttttataaatgattattcgtatttatacccaaactcatttttataggttacgtaagttactggcaattttccaaagagtgcttctcccaaatatcttcaattgaacttataacagaattcatcaagataattctgcaggaatttgggtttgatgtcatgaaatacatttattaactttcgcctggcattgctgatggcaatatgaacctggggcaagacttccctcaccttctctctttaggtatggcttgagaaatgagaactaccaccacatttgggacaaaccacaccaactcagtcacgatataccttgaacttttgtttgcaactttcctcatctggaattgagatagaaaatcgatcagtgtcattgccttatttttttgcaaagagattca
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
tgaatctctttgcaaaaaaataaggcaatgacactgatcgattttctatctcaattccagatgaggaaagttgcaaacaaaagttcaaggtatatcgtgactgagttggtgtggtttgtcccaaatgtggtggtagttctcatttctcaagccatacctaaagagagaaggtgagggaagtcttgccccaggttcatattgccatcagcaatgccaggcgaaagttaataaatgtatttcatgacatcaaacccaaattcctgcagaattatcttgatgaattctgttataagttcaattgaagatatttgggagaagcactctttggaaaattgccagtaacttacgtaacctataaaaatgagtttgggtataaatacgaataatcatttataaaaaaacaaaaaaaatcctcatctcgattagttatactatatagtta

Mask Tandem Repeat Region ================================================
taactatatagtataactaatcgagatgaggattttttttgtttttttataaatgattattcgtatttatacccaaactcatttttataggttacgtaagttactggcaattttccaaagagtgcttctcccaaatatcttcaattgaacttataacagaattcatcaagataattctgcaggaatttgggtttgatgtcatgaaatacatttattaactttcgcctggcattgctgatggcaatatgaacctggggcaagacttccctcaccttctctctttaggtatggcttgagaaatgagaactaccaccacatttgggacaaaccacaccaactcagtcacgatataccttgaacttttgtttgcaactttcctcatctggaattgagatagaaaatcgatcagtgtcattgccttatttttttgcaaagagattca

Find is-nt database================================================
Query_seq: TF0390:TF0391|TF0390:TF0391:conserved hypothetical protein:hypothetical protein:->->:410129..410570 442
taactatatagtataactaatcgagatgaggattttttttgtttttttataaatgattattcgtatttatacccaaactcatttttataggttacgtaagttactggcaattttccaaagagtgcttctcccaaatatcttcaattgaacttataacagaattcatcaagataattctgcaggaatttgggtttgatgtcatgaaatacatttattaactttcgcctggcattgctgatggcaatatgaacctggggcaagacttccctcaccttctctctttaggtatggcttgagaaatgagaactaccaccacatttgggacaaaccacaccaactcagtcacgatataccttgaacttttgtttgcaactttcctcatctggaattgagatagaaaatcgatcagtgtcattgccttatttttttgcaaagagattca
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: TF0390:TF0391|TF0390:TF0391:conserved hypothetical protein:hypothetical protein:->->:410129..410570 442
taactatatagtataactaatcgagatgaggattttttttgtttttttataaatgattattcgtatttatacccaaactcatttttataggttacgtaagttactggcaattttccaaagagtgcttctcccaaatatcttcaattgaacttataacagaattcatcaagataattctgcaggaatttgggtttgatgtcatgaaatacatttattaactttcgcctggcattgctgatggcaatatgaacctggggcaagacttccctcaccttctctctttaggtatggcttgagaaatgagaactaccaccacatttgggacaaaccacaccaactcagtcacgatataccttgaacttttgtttgcaactttcctcatctggaattgagatagaaaatcgatcagtgtcattgccttatttttttgcaaagagattca
Intra-Species Hit: Count: 0

Inter-species Hit: Count: 8	Min: 66	Max: 302	Len: 237
Subject: gi|54307579|ref|YP_128599.1| hypothetical transposase [Photobacterium profundum SS9]
HSP  1	e-value: 2.0E-9	bit: 58.2	Len: 195	Query Start:108	Query End:302	Subject Strand: null	Subject Start: 171	Subject End: 235
........................................................................................................... H  F  S  S  H  T  *  R  E  K  V  R  E  V  L  P  Q  V  H  I  A  I  S  N  A  R  R  K  L  I  N  V  F  H  D  I  K  P  K  F  L  Q  N  Y  L  D  E  F  C  Y  K  F  N  *  R  Y  L  G  E  A  L  F  G  K  L ............................................................................................................................................
........................................................................................................... H  E  A  K  V  T  P  S  E  L  V  D  E  W  L  P  W  V  H  I  A  I  G  N  L  K  T  F  L  L  G  T  F  H  G  V  S  G  Q  Y  L  Q  E  Y  L  D  E  F  C  Y  R  F  N  R  R  K  M  E  R  E  I  P  N  R  L ............................................................................................................................................

Subject: gi|54310600|ref|YP_131620.1| hypothetical transposase [Photobacterium profundum SS9]
HSP  1	e-value: 2.0E-9	bit: 58.2	Len: 195	Query Start:108	Query End:302	Subject Strand: null	Subject Start: 171	Subject End: 235
........................................................................................................... H  F  S  S  H  T  *  R  E  K  V  R  E  V  L  P  Q  V  H  I  A  I  S  N  A  R  R  K  L  I  N  V  F  H  D  I  K  P  K  F  L  Q  N  Y  L  D  E  F  C  Y  K  F  N  *  R  Y  L  G  E  A  L  F  G  K  L ............................................................................................................................................
........................................................................................................... H  E  A  K  V  T  P  S  E  L  V  D  E  W  L  P  W  V  H  I  A  I  G  N  L  K  T  F  L  L  G  T  F  H  G  V  S  G  Q  Y  L  Q  E  Y  L  D  E  F  C  Y  R  F  N  R  R  K  M  E  R  E  I  P  N  R  L ............................................................................................................................................

Subject: gi|54303065|ref|YP_133058.1| hypothetical transposase [Photobacterium profundum SS9]
HSP  1	e-value: 4.0E-9	bit: 57.4	Len: 195	Query Start:108	Query End:302	Subject Strand: null	Subject Start: 171	Subject End: 235
........................................................................................................... H  F  S  S  H  T  *  R  E  K  V  R  E  V  L  P  Q  V  H  I  A  I  S  N  A  R  R  K  L  I  N  V  F  H  D  I  K  P  K  F  L  Q  N  Y  L  D  E  F  C  Y  K  F  N  *  R  Y  L  G  E  A  L  F  G  K  L ............................................................................................................................................
........................................................................................................... H  E  A  K  V  T  P  S  E  L  V  D  E  W  L  P  W  V  H  I  A  I  G  N  L  K  T  F  L  L  G  T  F  H  G  M  S  G  Q  Y  L  Q  E  Y  L  D  E  F  C  Y  R  F  N  R  R  K  M  E  R  E  I  P  N  R  L ............................................................................................................................................

Subject: UniRef90_Q6LHH2 Cluster: Hypothetical transposase; n=4; Photobacterium profundum|Rep: Hypothetical transposase - Photobacterium profundum (Photobacterium sp. (strain SS9))
HSP  1	e-value: 4.0E-9	bit: 57.4	Len: 195	Query Start:108	Query End:302	Subject Strand: null	Subject Start: 171	Subject End: 235
........................................................................................................... H  F  S  S  H  T  *  R  E  K  V  R  E  V  L  P  Q  V  H  I  A  I  S  N  A  R  R  K  L  I  N  V  F  H  D  I  K  P  K  F  L  Q  N  Y  L  D  E  F  C  Y  K  F  N  *  R  Y  L  G  E  A  L  F  G  K  L ............................................................................................................................................
........................................................................................................... H  E  A  K  V  T  P  S  E  L  V  D  E  W  L  P  W  V  H  I  A  I  G  N  L  K  T  F  L  L  G  T  F  H  G  M  S  G  Q  Y  L  Q  E  Y  L  D  E  F  C  Y  R  F  N  R  R  K  M  E  R  E  I  P  N  R  L ............................................................................................................................................

Subject: gi|88811774|ref|ZP_01127028.1| ISSod11, transposase [Nitrococcus mobilis Nb-231]
HSP  1	e-value: 4.0E-6	bit: 47.4	Len: 201	Query Start:66	Query End:266	Subject Strand: null	Subject Start: 260	Subject End: 331
................................................................. E  V  L  P  Q  V  H  I  A  I  S  N  A  R  R  K  L  I  N  V  F  H  D  I  K  P  K  F  L  Q  N  Y  L  D  E  F  C  Y  K  F  N  *  R  Y  L  G  E  A  L  F  G  K  L  -  -  -  -  -  P  V  T  Y  V  T  Y  K  N  E  F  G  Y  K ................................................................................................................................................................................
................................................................. E  F  M  P  I  I  H  L  V  F  S  N  L  K  T  W  L  C  G  I  H  H  G  V  S  P  Q  H  L  Q  A  Y  L  D  E  F  T  F  R  F  N  R  R  F  Y  P  F  N  A  F  R  S  L  L  G  I  A  G  D  V  T  A  L  T  Y  A  E  L  Y  A  E  K ................................................................................................................................................................................

Subject: UniRef90_UPI00006B4B07 Cluster: ISSod11, transposase; n=1; Nitrococcus mobilis Nb-231|Rep: ISSod11, transposase - Nitrococcus mobilis Nb-231
HSP  1	e-value: 4.0E-6	bit: 47.4	Len: 201	Query Start:66	Query End:266	Subject Strand: null	Subject Start: 260	Subject End: 331
................................................................. E  V  L  P  Q  V  H  I  A  I  S  N  A  R  R  K  L  I  N  V  F  H  D  I  K  P  K  F  L  Q  N  Y  L  D  E  F  C  Y  K  F  N  *  R  Y  L  G  E  A  L  F  G  K  L  -  -  -  -  -  P  V  T  Y  V  T  Y  K  N  E  F  G  Y  K ................................................................................................................................................................................
................................................................. E  F  M  P  I  I  H  L  V  F  S  N  L  K  T  W  L  C  G  I  H  H  G  V  S  P  Q  H  L  Q  A  Y  L  D  E  F  T  F  R  F  N  R  R  F  Y  P  F  N  A  F  R  S  L  L  G  I  A  G  D  V  T  A  L  T  Y  A  E  L  Y  A  E  K ................................................................................................................................................................................

Subject: gi|83594638|ref|YP_428390.1| putative transposase [Rhodospirillum rubrum ATCC 11170]
HSP  1	e-value: 6.0E-6	bit: 46.6	Len: 168	Query Start:96	Query End:263	Subject Strand: null	Subject Start: 165	Subject End: 228
............................................................................................... V  L  P  Q  V  H  I  A  I  S  N  A  R  R  K  L  I  N  V  F  H  D  I  K  P  K  F  L  Q  N  Y  L  D  E  F  C  Y  K  F  N  *  R  Y  L  G  E  A  L  F  G  K  L  -  -  -  -  -  -  -  -  P  V  T  Y ...................................................................................................................................................................................
............................................................................................... V  L  P  W  V  H  R  V  I  S  N  L  K  T  W  A  L  G  V  Y  H  G  L  R  R  Q  H  L  Q  S  Y  L  N  E  F  V  F  R  F  N  C  R  R  T  P  H  A  A  F  R  T  L  L  G  I  G  L  A  I  Q  P  V  T  Y ...................................................................................................................................................................................

Subject: UniRef90_Q2RP42 Cluster: Putative transposase; n=1; Rhodospirillum rubrum ATCC 11170|Rep: Putative transposase - Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
HSP  1	e-value: 6.0E-6	bit: 46.6	Len: 168	Query Start:96	Query End:263	Subject Strand: null	Subject Start: 165	Subject End: 228
............................................................................................... V  L  P  Q  V  H  I  A  I  S  N  A  R  R  K  L  I  N  V  F  H  D  I  K  P  K  F  L  Q  N  Y  L  D  E  F  C  Y  K  F  N  *  R  Y  L  G  E  A  L  F  G  K  L  -  -  -  -  -  -  -  -  P  V  T  Y ...................................................................................................................................................................................
............................................................................................... V  L  P  W  V  H  R  V  I  S  N  L  K  T  W  A  L  G  V  Y  H  G  L  R  R  Q  H  L  Q  S  Y  L  N  E  F  V  F  R  F  N  C  R  R  T  P  H  A  A  F  R  T  L  L  G  I  G  L  A  I  Q  P  V  T  Y ...................................................................................................................................................................................


Find nr database================================================
Query_seq: TF0390:TF0391|TF0390:TF0391:conserved hypothetical protein:hypothetical protein:->->:410129..410570 442
taactatatagtataactaatcgagatgaggattttttttgtttttttataaatgattattcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaactaccaccacatttgggacaaaccacaccaactcagtcacgatataccttgaacttttgtttgcaactttcctcatctggaattgagatagaaaatcgatcagtgtcattgccttatttttttgcaaagagattca
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

taactatatagtataactaatcgagatgaggattttttttgtttttttataaatgattattcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaactaccaccacatttgggacaaaccacaccaactcagtcacgatataccttgaacttttgtttgcaactttcctcatctggaattgagatagaaaatcgatcagtgtcattgccttatttttttgcaaagagattca
Predict ORF larger than 30AA ================================================
Protein_Len: 31	Strand: +	Start: 53	End: 145
.................................................... M  I  I  R  I  Y  T  Q  T  H  F  Y  R  L  R  K  L  L  A  I  F  Q  R  V  L  L  P  N  I  F  N .........................................................................................................................................................................................................................................................................................................
Protein_Len: 49	Strand: +	Start: 69	End: 215
.................................................................... M  P  K  L  I  F  I  G  Y  V  S  Y  W  Q  F  S  K  E  C  F  S  Q  I  S  S  I  E  L  I  T  E  F  I  K  I  I  L  Q  E  F  G  F  D  V  M  K  Y  I  Y ...................................................................................................................................................................................................................................
Protein_Len: 30	Strand: +	Start: 300	End: 389
........................................................................................................................................................................................................................................................................................................... M  R  T  T  T  T  F  G  T  N  H  T  N  S  V  T  I  Y  L  E  L  L  F  A  T  F  L  I  W  N .....................................................
Protein_Len: 41	Strand: +	Start: 319	End: 441
.............................................................................................................................................................................................................................................................................................................................. M  G  Q  T  T  P  T  Q  S  R  Y  T  L  N  F  C  L  Q  L  S  S  S  G  I  E  I  E  N  R  S  V  S  L  P  Y  F  F  A  K  R  F .
Protein_Len: 56	Strand: -	Start: 272	End: 439
............................................................................................................................................................................................................................................................................... R  R  E  K  P  I  A  Q  S  I  L  V  V  V  V  N  P  V  F  W  V  L  E  T  V  I  Y  R  S  S  K  N  A  V  K  R  M  Q  F  Q  S  L  F  D  I  L  T  M  A  K  N  K  Q  L  S  M ...
Protein_Len: 43	Strand: -	Start: 144	End: 272
............................................................................................................................................... N  F  K  Y  C  F  E  D  L  Y  N  Q  L  F  K  P  K  I  D  H  F  V  N  I  L  K  R  R  A  N  S  I  A  I  H  V  Q  P  L  V  E  R  M ..........................................................................................................................................................................
Protein_Len: 36	Strand: -	Start: 104	End: 211
....................................................................................................... Q  C  N  E  L  S  H  K  E  W  I  D  E  I  S  S  I  V  S  N  M  L  I  I  R  C  S  N  P  N  S  T  M  F  Y  M .......................................................................................................................................................................................................................................

taactatatagtataactaatcgagatgaggattttttttgtttttttataaatgattattcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaactaccaccacatttgggacaaaccacaccaactcagtcacgatataccttgaacttttgtttgcaactttcctcatctggaattgagatagaaaatcgatcagtgtcattgccttatttttttgcaaagagattca
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: -	Score: 81	Start: 82	End: 111
.................................................................................ATTGCCAGTAACTTACGTAACCTATAAAAA...........................................................................................................................................................................................................................................................................................................................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

taactatatagtataactaatcgagatgaggattttttttgtttttttataaatgattattcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaactaccaccacatttgggacaaaccacaccaactcagtcacgatataccttgaacttttgtttgcaactttcctcatctggaattgagatagaaaatcgatcagtgtcattgccttatttttttgcaaagagattca
Predict TransTerm conf > 70================================================

Find igs database================================================
Query_seq: TF0390:TF0391|TF0390:TF0391:conserved hypothetical protein:hypothetical protein:->->:410129..410570 442
taactatatagtataactaatcgagatgaggattttttttgtttttttataaatgattattcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaactaccaccacatttgggacaaaccacaccaactcagtcacgatataccttgaacttttgtttgcaactttcctcatctggaattgagatagaaaatcgatcagtgtcattgccttatttttttgcaaagagattca
Intra-Species Hit: Count: 1	Min: 1	Max: 422	Len: 422
Subject: tfor_TF0390_TF0391|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[410129,410570]|442
HSP  1	e-value: 1.0E-61	bit: 238.0	Len: 120	Query Start:303	Query End:422	Subject Strand: POSITIVE	Subject Start: 303	Subject End: 422
..............................................................................................................................................................................................................................................................................................................agaactaccaccacatttgggacaaaccacaccaactcagtcacgatataccttgaacttttgtttgcaactttcctcatctggaattgagatagaaaatcgatcagtgtcattgcctta....................
..............................................................................................................................................................................................................................................................................................................agaactaccaccacatttgggacaaaccacaccaactcagtcacgatataccttgaacttttgtttgcaactttcctcatctggaattgagatagaaaatcgatcagtgtcattgcctta....................
HSP  2	e-value: 9.0E-29	bit: 129.0	Len: 65	Query Start:1	Query End:65	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 65
taactatatagtataactaatcgagatgaggattttttttgtttttttataaatgattattcgta.........................................................................................................................................................................................................................................................................................................................................................................................
taactatatagtataactaatcgagatgaggattttttttgtttttttataaatgattattcgta.........................................................................................................................................................................................................................................................................................................................................................................................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UAACUAUAUAGUAUAACUAAUCGAGAUGAGGAUUUUUUUUGUUUUUUUAUAAAUGAUUAUUCGUAUUUAUACCCAAACUCAUUUUUAUAGGUUACGUAAGUUACUGGCAAUUUUCCAAAGAGUGCUUCUCCCAAAUAUCUUCAAUUGAACUUAUAACAGAAUUCAUCAAGAUAAUUCUGCAGGAAUUUGGGUUUGAUGUCAUGAAAUACAUUUAUUAACUUUCGCCUGGCAUUGCUGAUGGCAAUAUGAACCUGGGGCAAGACUUCCCUCACCUUCUCUCUUUAGGUAUGGCUUGAGAAAUGAGAACUACCACCACAUUUGGGACAAACCACACCAACUCAGUCACGAUAUACCUUGAACUUUUGUUUGCAACUUUCCUCAUCUGGAAUUGAGAUAGAAAAUCGAUCAGUGUCAUUGCCUUA
........(((.....)))...(((((((((.................(((((((....(((((..(((.(((((((.((.........(((.((....)).))).(((..........(((.....))).....((((((....((((.((......)).))))..))))))....)))..)).))))))).)))....)))))...)))))))...(((.(.((.((.(((((.....))))).....)).)).).))).....)))))...)))).....(((((.((((.(((...((........)).......(((......)))......)))))))..(((((...((((..((((((((.(((..((((......)))))))))))))))..))))...)))))..))))).. (-80.40)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UAAGGCAAUGACACUGAUCGAUUUUCUAUCUCAAUUCCAGAUGAGGAAAGUUGCAAACAAAAGUUCAAGGUAUAUCGUGACUGAGUUGGUGUGGUUUGUCCCAAAUGUGGUGGUAGUUCUCAUUUCUCAAGCCAUACCUAAAGAGAGAAGGUGAGGGAAGUCUUGCCCCAGGUUCAUAUUGCCAUCAGCAAUGCCAGGCGAAAGUUAAUAAAUGUAUUUCAUGACAUCAAACCCAAAUUCCUGCAGAAUUAUCUUGAUGAAUUCUGUUAUAAGUUCAAUUGAAGAUAUUUGGGAGAAGCACUCUUUGGAAAAUUGCCAGUAACUUACGUAACCUAUAAAAAUGAGUUUGGGUAUAAAUACGAAUAAUCAUUUAUAAAAAAACAAAAAAAAUCCUCAUCUCGAUUAGUUAUACUAUAUAGUUA
....(((((....((.(((....................))).))....)))))...............(((((..((((((((...(((((((((((....(((((.((.......)).)))))..)))))))))))........((.((((((((.....(((((...(((....(((((.....)))))))).)))))......(((((((...(((.((....)).((((((((((..((((((((((....))).)))))))..((((((..((((..(((.(((.(((((.....))))).))).)))..))))))))))................))))))))))........)))....)))))))................))))))))))..))))))))..)))))..... (-99.65)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
683	420	371	96	46	tfor:TF0670|5end_possible_transposase_714069..714299_POSITIVE
643	279	231	152	104	tfor:TF0837|5end_possible_transposase_fragment_889820..890050_POSITIVE
641	130	81	139	90	tfor:TF1377|5end_conserved_hypothetical_protein_1453767..1453997_POSITIVE
641	420	373	96	48	tfor:TF1095|5end_transposase_1164343..1164573_POSITIVE
634	420	371	78	28	tfor:TF1865|5end_conserved_hypothetical_protein;_possible_transposase_2021532..2021762_POSITIVE
633	279	231	98	50	tfor:TF1866|5end_conserved_hypothetical_protein;_possible_transposase_2022272..2022502_POSITIVE
617	139	92	148	101	tfor:TF1867|5end_transposase_2022462..2022692_POSITIVE
617	139	92	148	101	tfor:TF0838|5end_conserved_hypothetical_protein_889956..890186_POSITIVE
615	420	373	57	9	tfor:TF2479|5end_conserved_hypothetical_protein_2655992..2656222_POSITIVE
615	420	373	57	9	tfor:TF1264|5end_possible_transposase_1351290..1351520_POSITIVE
611	100	53	230	183	tfor:TF1265|5end_dihydroorotate_dehydrogenase_1352360..1352590_POSITIVE
591	98	51	231	184	tfor:TF0671|5end_histidine_kinase_sensor_protein_715103..715333_POSITIVE
556	279	231	98	50	tfor:TF1096|5end_conserved_hypothetical_protein_1165065..1165295_POSITIVE
355	86	53	231	198	tfor:TF1868|5end_conserved_hypothetical_protein;_possible_transposase_2022598..2022828_POSITIVE
349	258	219	218	177	tfor:TF0543|5end_glycine_cleavage_system_p-protein_572251..572481_POSITIVE
337	268	226	104	55	tfor:TF1274|5end_hypothetical_protein_1357621..1357851_POSITIVE
333	270	223	164	119	tfor:TF0142|5end_subtilisin-like_serine_proteinase_149740..149970_POSITIVE
330	258	218	55	11	tfor:TF2165|5end_hypothetical_protein_2341654..2341884_POSITIVE
329	259	218	67	2	tfor:TF1718|5end_conserved_hypothetical_protein_1840462..1840692_POSITIVE
326	257	219	225	181	tfor:TF2206|5end_conserved_hypothetical_protein;_possible_sugar_phosphate_isomerase/epimerase_2379969..2380199_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
638	270	227	143	100	tfor:TF0836|3end_possible_transposase_889900..890050_POSITIVE
629	100	51	131	82	tfor:TF0670|3end_possible_transposase_715081..715231_POSITIVE
628	270	227	143	100	tfor:TF1865|3end_conserved_hypothetical_protein;_possible_transposase_2022406..2022556_POSITIVE
615	120	71	151	102	tfor:TF2479|3end_conserved_hypothetical_protein_2657043..2657193_POSITIVE
615	120	71	151	102	tfor:TF1376|3end_possible_transposase_1453869..1454019_POSITIVE
615	120	71	151	102	tfor:TF1264|3end_possible_transposase_1352341..1352491_POSITIVE
551	270	227	143	100	tfor:TF1095|3end_transposase_1165199..1165349_POSITIVE
517	100	52	131	83	tfor:TF1096|3end_conserved_hypothetical_protein_1165357..1165507_POSITIVE
515	120	71	151	102	tfor:TF1866|3end_conserved_hypothetical_protein;_possible_transposase_2022564..2022714_POSITIVE
515	120	71	151	102	tfor:TF0837|3end_possible_transposase_fragment_890058..890208_POSITIVE
337	420	399	22	1	tfor:TF1263|3end_DNA-mismatch_repair_protein_1351335..1351485_POSITIVE
320	261	221	52	6	tfor:TF2263|3end_transfer_region-related_protein,_TraN_2432964..2433114_POSITIVE
316	260	218	52	16	tfor:TF0134|3end_transposase_element_146044..146194_POSITIVE
313	258	218	147	101	tfor:TF0535|3end_surface_antigen_BspA_561701..561851_POSITIVE
311	266	224	89	28	tfor:TF0252|3end_hypothetical_protein_283759..283909_POSITIVE
306	270	224	69	14	tfor:TF1367|3end_hypothetical_protein_1447272..1447422_POSITIVE
306	270	224	65	10	tfor:TF1368|3end_hypothetical_protein_1447268..1447418_POSITIVE
306	420	402	19	1	tfor:TF1094|3end_conserved_hypothetical_protein_1164346..1164496_POSITIVE
305	397	351	78	34	tfor:TF0624|3end_Xaa-Pro_dipeptidase_(aminopeptidase_P)_661015..661165_POSITIVE
303	270	226	111	58	tfor:TF0203|3end_PhoH-like_protein_230660..230810_POSITIVE